In this work we introduce a new optimisation method called SAGA in the spirit of SAG, SDCA, MISO and SVRG, a set of recently proposed incremental gradient algorithms with fast linear convergence rates. SAGA improves on the theory behind SAG and SVRG, with better theoretical convergence rates, and has support for composite objectives where a proximal operator is used on the regulariser. Unlike SDCA, SAGA supports non-strongly convex problems directly, and is adaptive to any inherent strong convexity of the problem. We give experimental results showing the effectiveness of our method.

Markov Chain Monte Carlo (MCMC) algorithms are a workhorse of probabilistic modeling and inference, but are difficult to debug, and are prone to silent failure if implemented naively. We outline several strategies for testing the correctness of MCMC algorithms. Specifically, we advocate writing code in a modular way, where conditional probability calculations are kept separate from the logic of the sampler. We discuss strategies for both unit testing and integration testing. As a running example, we show how a Python implementation of Gibbs sampling for a mixture of Gaussians model can be tested.

A key element in transfer learning is representation learning; if representations can be developed that expose the relevant factors underlying the data, then new tasks and domains can be learned readily based on mappings of these salient factors. We propose that an important aim for these representations are to be unbiased. Different forms of representation learning can be derived from alternative definitions of unwanted bias, e.g., bias to particular tasks, domains, or irrelevant underlying data dimensions. One very useful approach to estimating the amount of bias in a representation comes from maximum mean discrepancy (MMD) [5], a measure of distance between probability distributions. We are not the first to suggest that MMD can be a useful criterion in developing representations that apply across multiple domains or tasks [1]. However, in this paper we describe a number of novel applications of this criterion that we have devised, all based on the idea of developing unbiased representations. These formulations include: a standard domain adaptation framework; a method of learning invariant representations; an approach based on noise-insensitive autoencoders; and a novel form of generative model.

We formalize the notion of a pseudo-ensemble, a (possibly infinite) collection of child models spawned from a parent model by perturbing it according to some noise process. E.g., dropout (Hinton et. al, 2012) in a deep neural network trains a pseudo-ensemble of child subnetworks generated by randomly masking nodes in the parent network. We present a novel regularizer based on making the behavior of a pseudo-ensemble robust with respect to the noise process generating it. In the fully-supervised setting, our regularizer matches the performance of dropout. But, unlike dropout, our regularizer naturally extends to the semi-supervised setting, where it produces state-of-the-art results. We provide a case study in which we transform the Recursive Neural Tensor Network of (Socher et. al, 2013) into a pseudo-ensemble, which significantly improves its performance on a real-world sentiment analysis benchmark.

Big Data bring new opportunities to modern society and challenges to data scientists. On one hand, Big Data hold great promises for discovering subtle population patterns and heterogeneities that are not possible with small-scale data. On the other hand, the massive sample size and high dimensionality of Big Data introduce unique computational and statistical challenges, including scalability and storage bottleneck, noise accumulation, spurious correlation, incidental endogeneity, and measurement errors. These challenges are distinguished and require new computational and statistical paradigm. This article give overviews on the salient features of Big Data and how these features impact on paradigm change on statistical and computational methods as well as computing architectures. We also provide various new perspectives on the Big Data analysis and computation. In particular, we emphasis on the viability of the sparsest solution in high-confidence set and point out that exogeneous assumptions in most statistical methods for Big Data can not be validated due to incidental endogeneity. They can lead to wrong statistical inferences and consequently wrong scientific conclusions.

This paper introduces Kernel-based Information Criterion (KIC) for model selection in regression analysis. The novel kernel-based complexity measure in KIC efficiently computes the interdependency between parameters of the model using a variable-wise variance and yields selection of better, more robust regressors. Experimental results show superior performance on both simulated and real data sets compared to Leave-One-Out Cross-Validation (LOOCV), kernel-based Information Complexity (ICOMP), and maximum log of marginal likelihood in Gaussian Process Regression (GPR).

Statistical machine learning methods are increasingly used for neuroimaging data analysis. Their main virtue is their ability to model high-dimensional datasets, e.g. multivariate analysis of activation images or resting-state time series. Supervised learning is typically used in decoding or encoding settings to relate brain images to behavioral or clinical observations, while unsupervised learning can uncover hidden structures in sets of images (e.g. resting state functional MRI) or find sub-populations in large cohorts. By considering different functional neuroimaging applications, we illustrate how scikit-learn, a Python machine learning library, can be used to perform some key analysis steps. Scikit-learn contains a very large set of statistical learning algorithms, both supervised and unsupervised, and its application to neuroimaging data provides a versatile tool to study the brain.

We present a sparse analogue to stochastic gradient descent that is guaranteed to perform well under similar conditions to the lasso. In the linear regression setup with irrepresentable noise features, our algorithm recovers the support set of the optimal parameter vector with high probability, and achieves a statistically quasi-optimal rate of convergence of Op(k log(d)/T), where k is the sparsity of the solution, d is the number of features, and T is the number of training examples. Meanwhile, our algorithm does not require any more computational resources than stochastic gradient descent. In our experiments, we find that our method substantially out-performs existing streaming algorithms on both real and simulated data.

We propose a general technique for improving alternating optimization (AO) of nonconvex functions. Starting from the solution given by AO, we conduct another sequence of searches over subspaces that are both meaningful to the optimization problem at hand and different from those used by AO. To demonstrate the utility of our approach, we apply it to the matrix factorization (MF) algorithm for recommender systems and the coordinate descent algorithm for penalized regression (PR), and show meaningful improvements using both real-world (for MF) and simulated (for PR) data sets. Moreover, we demonstrate for MF that, by constructing search spaces customized to the given data set, we can significantly increase the convergence rate of our technique.

Recent computational strategies based on screening tests have been proposed to accelerate algorithms addressing penalized sparse regression problems such as the Lasso. Such approaches build upon the idea that it is worth dedicating some small computational effort to locate inactive atoms and remove them from the dictionary in a preprocessing stage so that the regression algorithm working with a smaller dictionary will then converge faster to the solution of the initial problem. We believe that there is an even more efficient way to screen the dictionary and obtain a greater acceleration: inside each iteration of the regression algorithm, one may take advantage of the algorithm computations to obtain a new screening test for free with increasing screening effects along the iterations. The dictionary is henceforth dynamically screened instead of being screened statically, once and for all, before the first iteration. We formalize this dynamic screening principle in a general algorithmic scheme and apply it by embedding inside a number of first-order algorithms adapted existing screening tests to solve the Lasso or new screening tests to solve the Group-Lasso. Computational gains are assessed in a large set of experiments on synthetic data as well as real-world sounds and images. They show both the screening efficiency and the gain in terms running times.