Supervised topic models simultaneously model the latent topic structure of large collections of documents and a response variable associated with each document. Existing inference methods are based on either variational approximation or Monte Carlo sampling. This paper presents a novel spectral decomposition algorithm to recover the parameters of supervised latent Dirichlet allocation (sLDA) models. The Spectral-sLDA algorithm is provably correct and computationally efficient. We prove a sample complexity bound and subsequently derive a sufficient condition for the identifiability of sLDA. Thorough experiments on a diverse range of synthetic and real-world datasets verify the theory and demonstrate the practical effectiveness of the algorithm.

The global Markov property for Gaussian graphical models ensures graph separation implies conditional independence. Specifically if a node set $S$ graph separates nodes $u$ and $v$ then $X_u$ is conditionally independent of $X_v$ given $X_S$. The opposite direction need not be true, that is, $X_u \perp X_v \mid X_S$ need not imply $S$ is a node separator of $u$ and $v$. When it does, the relation $X_u \perp X_v \mid X_S$ is called faithful. In this paper we provide a characterization of faithful relations and then provide an algorithm to test faithfulness based only on knowledge of other conditional relations of the form $X_i \perp X_j \mid X_S$.

We develop a framework for post model selection inference, via marginal screening, in linear regression. At the core of this framework is a result that characterizes the exact distribution of linear functions of the response $y$, conditional on the model being selected (``condition on selection framework). This allows us to construct valid confidence intervals and hypothesis tests for regression coefficients that account for the selection procedure. In contrast to recent work in high-dimensional statistics, our results are exact (non-asymptotic) and require no eigenvalue-like assumptions on the design matrix $X$. Furthermore, the computational cost of marginal regression, constructing confidence intervals and hypothesis testing is negligible compared to the cost of linear regression, thus making our methods particularly suitable for extremely large datasets. Although we focus on marginal screening to illustrate the applicability of the condition on selection framework, this framework is much more broadly applicable. We show how to apply the proposed framework to several other selection procedures including orthogonal matching pursuit and marginal screening+Lasso."

Developments in neural recording technology are rapidly enabling the recording of populations of neurons in multiple brain areas simultaneously, as well as the identification of the types of neurons being recorded (e.g., excitatory vs. inhibitory). There is a growing need for statistical methods to study the interaction among multiple, labeled populations of neurons. Rather than attempting to identify direct interactions between neurons (where the number of interactions grows with the number of neurons squared), we propose to extract a smaller number of latent variables from each population and study how the latent variables interact. Specifically, we propose extensions to probabilistic canonical correlation analysis (pCCA) to capture the temporal structure of the latent variables, as well as to distinguish within-population dynamics from across-population interactions (termed Group Latent Auto-Regressive Analysis, gLARA). We then applied these methods to populations of neurons recorded simultaneously in visual areas V1 and V2, and found that gLARA provides a better description of the recordings than pCCA. This work provides a foundation for studying how multiple populations of neurons interact and how this interaction supports brain function.

The mirror descent algorithm (MDA) generalizes gradient descent by using a Bregman divergence to replace squared Euclidean distance. In this paper, we similarly generalize the alternating direction method of multipliers (ADMM) to Bregman ADMM (BADMM), which allows the choice of different Bregman divergences to exploit the structure of problems. BADMM provides a unified framework for ADMM and its variants, including generalized ADMM, inexact ADMM and Bethe ADMM. We establish the global convergence and the $O(1/T)$ iteration complexity for BADMM. In some cases, BADMM can be faster than ADMM by a factor of $O(n/\ln n)$ where $n$ is the dimensionality. In solving the linear program of mass transportation problem, BADMM leads to massive parallelism and can easily run on GPU. BADMM is several times faster than highly optimized commercial software Gurobi.

The sparse inverse covariance estimation problem arises in many statistical applications in machine learning and signal processing. In this problem, the inverse of a covariance matrix of a multivariate normal distribution is estimated, assuming that it is sparse. An $\ell_1$ regularized log-determinant optimization problem is typically solved to approximate such matrices. Because of memory limitations, most existing algorithms are unable to handle large scale instances of this problem. In this paper we present a new block-coordinate descent approach for solving the problem for large-scale data sets. Our method treats the sought matrix block-by-block using quadratic approximations, and we show that this approach has advantages over existing methods in several aspects. Numerical experiments on both synthetic and real gene expression data demonstrate that our approach outperforms the existing state of the art methods, especially for large-scale problems.

In many modern applications from, for example, bioinformatics and computer vision, samples have multiple feature representations coming from different data sources. Multiview learning algorithms try to exploit all these available information to obtain a better learner in such scenarios. In this paper, we propose a novel multiple kernel learning algorithm that extends kernel k-means clustering to the multiview setting, which combines kernels calculated on the views in a localized way to better capture sample-specific characteristics of the data. We demonstrate the better performance of our localized data fusion approach on a human colon and rectal cancer data set by clustering patients. Our method finds more relevant prognostic patient groups than global data fusion methods when we evaluate the results with respect to three commonly used clinical biomarkers.

We address the problem of image collection summarization by learning mixtures of submodular functions. We argue that submodularity is very natural to this problem, and we show that a number of previously used scoring functions are submodular — a property not explicitly mentioned in these publications. We provide classes of submodular functions capturing the necessary properties of summaries, namely coverage, likelihood, and diversity. To learn mixtures of these submodular functions as scoring functions, we formulate summarization as a supervised learning problem using large-margin structured prediction. Furthermore, we introduce a novel evaluation metric, which we call V-ROUGE, for automatic summary scoring. While a similar metric called ROUGE has been successfully applied to document summarization [14], no such metric was known for quantifying the quality of image collection summaries. We provide a new dataset consisting of 14 real-world image collections along with many human-generated ground truth summaries collected using mechanical turk. We also extensively compare our method with previously explored methods for this problem and show that our learning approach outperforms all competitors on this new dataset. This paper provides, to our knowledge, the first systematic approach for quantifying the problem of image collection summarization, along with a new dataset of image collections and human summaries.

Stochastic variational inference (SVI) uses stochastic optimization to scale up Bayesian computation to massive data. We present an alternative perspective on SVI as approximate parallel coordinate ascent. SVI trades-off bias and variance to step close to the unknown true coordinate optimum given by batch variational Bayes (VB). We define a model to automate this process. The model infers the location of the next VB optimum from a sequence of noisy realizations. As a consequence of this construction, we update the variational parameters using Bayes rule, rather than a hand-crafted optimization schedule. When our model is a Kalman filter this procedure can recover the original SVI algorithm and SVI with adaptive steps. We may also encode additional assumptions in the model, such as heavy-tailed noise. By doing so, our algorithm outperforms the original SVI schedule and a state-of-the-art adaptive SVI algorithm in two diverse domains.

In this paper, we consider a multi-step version of the stochastic ADMM method with efficient guarantees for high-dimensional problems. We first analyze the simple setting, where the optimization problem consists of a loss function and a single regularizer (e.g. sparse optimization), and then extend to the multi-block setting with multiple regularizers and multiple variables (e.g. matrix decomposition into sparse and low rank components). For the sparse optimization problem, our method achieves the minimax rate of $O(s\log d/T)$ for $s$-sparse problems in $d$ dimensions in $T$ steps, and is thus, unimprovable by any method up to constant factors. For the matrix decomposition problem with a general loss function, we analyze the multi-step ADMM with multiple blocks. We establish $O(1/T)$ rate and efficient scaling as the size of matrix grows. For natural noise models (e.g. independent noise), our convergence rate is minimax-optimal. Thus, we establish tight convergence guarantees for multi-block ADMM in high dimensions. Experiments show that for both sparse optimization and matrix decomposition problems, our algorithm outperforms the state-of-the-art methods.