Statistical Learning
An Experimental Comparison of Several Clustering and Initialization Methods
Meila, Marina, Heckerman, David
We examine methods for clustering in high dimensions. In the first part of the paper, we perform an experimental comparison between three batch clustering algorithms: the Expectation-Maximization (EM) algorithm, a winner take all version of the EM algorithm reminiscent of the K-means algorithm, and model-based hierarchical agglomerative clustering. We learn naive-Bayes models with a hidden root node, using high-dimensional discrete-variable data sets (both real and synthetic). We find that the EM algorithm significantly outperforms the other methods, and proceed to investigate the effect of various initialization schemes on the final solution produced by the EM algorithm. The initializations that we consider are (1) parameters sampled from an uninformative prior, (2) random perturbations of the marginal distribution of the data, and (3) the output of hierarchical agglomerative clustering. Although the methods are substantially different, they lead to learned models that are strikingly similar in quality.
A New Perspective on Boosting in Linear Regression via Subgradient Optimization and Relatives
Freund, Robert M., Grigas, Paul, Mazumder, Rahul
In this paper we analyze boosting algorithms in linear regression from a new perspective: that of modern first-order methods in convex optimization. We show that classic boosting algorithms in linear regression, namely the incremental forward stagewise algorithm (FS$_\varepsilon$) and least squares boosting (LS-Boost($\varepsilon$)), can be viewed as subgradient descent to minimize the loss function defined as the maximum absolute correlation between the features and residuals. We also propose a modification of FS$_\varepsilon$ that yields an algorithm for the Lasso, and that may be easily extended to an algorithm that computes the Lasso path for different values of the regularization parameter. Furthermore, we show that these new algorithms for the Lasso may also be interpreted as the same master algorithm (subgradient descent), applied to a regularized version of the maximum absolute correlation loss function. We derive novel, comprehensive computational guarantees for several boosting algorithms in linear regression (including LS-Boost($\varepsilon$) and FS$_\varepsilon$) by using techniques of modern first-order methods in convex optimization. Our computational guarantees inform us about the statistical properties of boosting algorithms. In particular they provide, for the first time, a precise theoretical description of the amount of data-fidelity and regularization imparted by running a boosting algorithm with a prespecified learning rate for a fixed but arbitrary number of iterations, for any dataset.
Algorithmic Connections Between Active Learning and Stochastic Convex Optimization
Interesting theoretical associations have been established by recent papers between the fields of active learning and stochastic convex optimization due to the common role of feedback in sequential querying mechanisms. In this paper, we continue this thread in two parts by exploiting these relations for the first time to yield novel algorithms in both fields, further motivating the study of their intersection. First, inspired by a recent optimization algorithm that was adaptive to unknown uniform convexity parameters, we present a new active learning algorithm for one-dimensional thresholds that can yield minimax rates by adapting to unknown noise parameters. Next, we show that one can perform $d$-dimensional stochastic minimization of smooth uniformly convex functions when only granted oracle access to noisy gradient signs along any coordinate instead of real-valued gradients, by using a simple randomized coordinate descent procedure where each line search can be solved by $1$-dimensional active learning, provably achieving the same error convergence rate as having the entire real-valued gradient. Combining these two parts yields an algorithm that solves stochastic convex optimization of uniformly convex and smooth functions using only noisy gradient signs by repeatedly performing active learning, achieves optimal rates and is adaptive to all unknown convexity and smoothness parameters.
Optimal Low-Rank Tensor Recovery from Separable Measurements: Four Contractions Suffice
Shah, Parikshit, Rao, Nikhil, Tang, Gongguo
Tensors play a central role in many modern machine learning and signal processing applications. In such applications, the target tensor is usually of low rank, i.e., can be expressed as a sum of a small number of rank one tensors. This motivates us to consider the problem of low rank tensor recovery from a class of linear measurements called separable measurements. As specific examples, we focus on two distinct types of separable measurement mechanisms (a) Random projections, where each measurement corresponds to an inner product of the tensor with a suitable random tensor, and (b) the completion problem where measurements constitute revelation of a random set of entries. We present a computationally efficient algorithm, with rigorous and order-optimal sample complexity results (upto logarithmic factors) for tensor recovery. Our method is based on reduction to matrix completion sub-problems and adaptation of Leurgans' method for tensor decomposition. We extend the methodology and sample complexity results to higher order tensors, and experimentally validate our theoretical results.
Ensembling classification models based on phalanxes of variables with applications in drug discovery
Tomal, Jabed H., Welch, William J., Zamar, Ruben H.
Statistical detection of a rare class of objects in a two-class classification problem can pose several challenges. Because the class of interest is rare in the training data, there is relatively little information in the known class response labels for model building. At the same time the available explanatory variables are often moderately high dimensional. In the four assays of our drug-discovery application, compounds are active or not against a specific biological target, such as lung cancer tumor cells, and active compounds are rare. Several sets of chemical descriptor variables from computational chemistry are available to classify the active versus inactive class; each can have up to thousands of variables characterizing molecular structure of the compounds. The statistical challenge is to make use of the richness of the explanatory variables in the presence of scant response information. Our algorithm divides the explanatory variables into subsets adaptively and passes each subset to a base classifier. The various base classifiers are then ensembled to produce one model to rank new objects by their estimated probabilities of belonging to the rare class of interest. The essence of the algorithm is to choose the subsets such that variables in the same group work well together; we call such groups phalanxes.
Consistent Algorithms for Multiclass Classification with a Reject Option
Ramaswamy, Harish G., Tewari, Ambuj, Agarwal, Shivani
We consider the problem of $n$-class classification ($n\geq 2$), where the classifier can choose to abstain from making predictions at a given cost, say, a factor $\alpha$ of the cost of misclassification. Designing consistent algorithms for such $n$-class classification problems with a `reject option' is the main goal of this paper, thereby extending and generalizing previously known results for $n=2$. We show that the Crammer-Singer surrogate and the one vs all hinge loss, albeit with a different predictor than the standard argmax, yield consistent algorithms for this problem when $\alpha=\frac{1}{2}$. More interestingly, we design a new convex surrogate that is also consistent for this problem when $\alpha=\frac{1}{2}$ and operates on a much lower dimensional space ($\log(n)$ as opposed to $n$). We also generalize all three surrogates to be consistent for any $\alpha\in[0, \frac{1}{2}]$.
Compound Poisson Processes, Latent Shrinkage Priors and Bayesian Nonconvex Penalization
In this paper we discuss Bayesian nonconvex penalization for sparse learning problems. We explore a nonparametric formulation for latent shrinkage parameters using subordinators which are one-dimensional L\'{e}vy processes. We particularly study a family of continuous compound Poisson subordinators and a family of discrete compound Poisson subordinators. We exemplify four specific subordinators: Gamma, Poisson, negative binomial and squared Bessel subordinators. The Laplace exponents of the subordinators are Bernstein functions, so they can be used as sparsity-inducing nonconvex penalty functions. We exploit these subordinators in regression problems, yielding a hierarchical model with multiple regularization parameters. We devise ECME (Expectation/Conditional Maximization Either) algorithms to simultaneously estimate regression coefficients and regularization parameters. The empirical evaluation of simulated data shows that our approach is feasible and effective in high-dimensional data analysis.
MCODE: Multivariate Conditional Outlier Detection
Hong, Charmgil, Hauskrecht, Milos
Outlier detection aims to identify unusual data instances that deviate from expected patterns. The outlier detection is particularly challenging when outliers are context dependent and when they are defined by unusual combinations of multiple outcome variable values. In this paper, we develop and study a new conditional outlier detection approach for multivariate outcome spaces that works by (1) transforming the conditional detection to the outlier detection problem in a new (unconditional) space and (2) defining outlier scores by analyzing the data in the new space. Our approach relies on the classifier chain decomposition of the multi-dimensional classification problem that lets us transform the output space into a probability vector, one probability for each dimension of the output space. Outlier scores applied to these transformed vectors are then used to detect the outliers. Experiments on multiple multi-dimensional classification problems with the different outlier injection rates show that our methodology is robust and able to successfully identify outliers when outliers are either sparse (manifested in one or very few dimensions) or dense (affecting multiple dimensions).
An Analysis of Active Learning With Uniform Feature Noise
Ramdas, Aaditya, Poczos, Barnabas, Singh, Aarti, Wasserman, Larry
In active learning, the user sequentially chooses values for feature $X$ and an oracle returns the corresponding label $Y$. In this paper, we consider the effect of feature noise in active learning, which could arise either because $X$ itself is being measured, or it is corrupted in transmission to the oracle, or the oracle returns the label of a noisy version of the query point. In statistics, feature noise is known as "errors in variables" and has been studied extensively in non-active settings. However, the effect of feature noise in active learning has not been studied before. We consider the well-known Berkson errors-in-variables model with additive uniform noise of width $\sigma$. Our simple but revealing setting is that of one-dimensional binary classification setting where the goal is to learn a threshold (point where the probability of a $+$ label crosses half). We deal with regression functions that are antisymmetric in a region of size $\sigma$ around the threshold and also satisfy Tsybakov's margin condition around the threshold. We prove minimax lower and upper bounds which demonstrate that when $\sigma$ is smaller than the minimiax active/passive noiseless error derived in \cite{CN07}, then noise has no effect on the rates and one achieves the same noiseless rates. For larger $\sigma$, the \textit{unflattening} of the regression function on convolution with uniform noise, along with its local antisymmetry around the threshold, together yield a behaviour where noise \textit{appears} to be beneficial. Our key result is that active learning can buy significant improvement over a passive strategy even in the presence of feature noise.
Petuum: A New Platform for Distributed Machine Learning on Big Data
Xing, Eric P., Ho, Qirong, Dai, Wei, Kim, Jin Kyu, Wei, Jinliang, Lee, Seunghak, Zheng, Xun, Xie, Pengtao, Kumar, Abhimanu, Yu, Yaoliang
What is a systematic way to efficiently apply a wide spectrum of advanced ML programs to industrial scale problems, using Big Models (up to 100s of billions of parameters) on Big Data (up to terabytes or petabytes)? Modern parallelization strategies employ fine-grained operations and scheduling beyond the classic bulk-synchronous processing paradigm popularized by MapReduce, or even specialized graph-based execution that relies on graph representations of ML programs. The variety of approaches tends to pull systems and algorithms design in different directions, and it remains difficult to find a universal platform applicable to a wide range of ML programs at scale. We propose a general-purpose framework that systematically addresses data- and model-parallel challenges in large-scale ML, by observing that many ML programs are fundamentally optimization-centric and admit error-tolerant, iterative-convergent algorithmic solutions. This presents unique opportunities for an integrative system design, such as bounded-error network synchronization and dynamic scheduling based on ML program structure. We demonstrate the efficacy of these system designs versus well-known implementations of modern ML algorithms, allowing ML programs to run in much less time and at considerably larger model sizes, even on modestly-sized compute clusters.