Wasserstein gradient flows provide a powerful means of understanding and solving many diffusion equations. Specifically, Fokker-Planck equations, which model the diffusion of probability measures, can be understood as gradient descent over entropy functionals in Wasserstein space. This equivalence, introduced by Jordan, Kinderlehrer and Otto, inspired the so-called JKO scheme to approximate these diffusion processes via an implicit discretization of the gradient flow in Wasserstein space. Solving the optimization problem associated with each JKO step, however, presents serious computational challenges. We introduce a scalable method to approximate Wasserstein gradient flows, targeted to machine learning applications. Our approach relies on input-convex neural networks (ICNNs) to discretize the JKO steps, which can be optimized by stochastic gradient descent. Contrarily to previous work, our method does not require domain discretization or particle simulation. As a result, we can sample from the measure at each time step of the diffusion and compute its probability density. We demonstrate the performance of our algorithm by computing diffusions following the Fokker-Planck equation and apply it to unnormalized density sampling as well as nonlinear filtering.

Kernel methods augmented with random features give scalable algorithms for learning from big data. But it has been computationally hard to sample random features according to a probability distribution that is optimized for the data, so as to minimize the required number of features for achieving the learning to a desired accuracy. Here, we develop a quantum algorithm for sampling from this optimized distribution over features, in runtime O(D) that is linear in the dimension D of the input data. Our algorithm achieves an exponential speedup in D compared to any known classical algorithm for this sampling task. In contrast to existing quantum machine learning algorithms, our algorithm circumvents sparsity and low-rank assumptions and thus has wide applicability. We also show that the sampled features can be combined with regression by stochastic gradient descent to achieve the learning without canceling out our exponential speedup. Our algorithm based on sampling optimized random features leads to an accelerated framework for machine learning that takes advantage of quantum computers.

For many inference problems in statistics and econometrics, the unknown parameter is identified by a set of moment conditions. A generic method of solving moment conditions is the Generalized Method of Moments (GMM). However, classical GMM estimation is potentially very sensitive to outliers. Robustified GMM estimators have been developed in the past, but suffer from several drawbacks: computational intractability, poor dimension-dependence, and no quantitative recovery guarantees in the presence of a constant fraction of outliers. In this work, we develop the first computationally efficient GMM estimator (under intuitive assumptions) that can tolerate a constant $\epsilon$ fraction of adversarially corrupted samples, and that has an $\ell_2$ recovery guarantee of $O(\sqrt{\epsilon})$. To achieve this, we draw upon and extend a recent line of work on algorithmic robust statistics for related but simpler problems such as mean estimation, linear regression and stochastic optimization. As a special case, we apply our algorithm to instrumental variables linear regression with heterogeneous treatment effects, and experimentally demonstrate that it can tolerate as much as $10$ -- $15\%$ corruption, significantly improving upon baseline methods.

To measure the difference between two probability distributions, referred to as the source and target, respectively, we exploit both the chain rule and Bayes' theorem to construct conditional transport (CT), which is constituted by both a forward component and a backward one. The forward CT is the expected cost of moving a source data point to a target one, with their joint distribution defined by the product of the source probability density function (PDF) and a source-dependent conditional distribution, which is related to the target PDF via Bayes' theorem. The backward CT is defined by reversing the direction. The CT cost can be approximated by replacing the source and target PDFs with their discrete empirical distributions supported on mini-batches, making it amenable to implicit distributions and stochastic gradient descent-based optimization. When applied to train a generative model, CT is shown to strike a good balance between mode-covering and mode-seeking behaviors and strongly resist mode collapse. On a wide variety of benchmark datasets for generative modeling, substituting the default statistical distance of an existing generative adversarial network with CT is shown to consistently improve the performance.

MCMC algorithms offer empirically efficient tools for sampling from a target distribution $\pi(x) \propto \exp(-V(x))$. However, on the theory side, MCMC algorithms suffer from slow mixing rate when $\pi(x)$ is non-log-concave. Our work examines this gap and shows that when Poincar\'e-style inequality holds on a subset $\mathcal{X}$ of the state space, the conditional distribution of MCMC iterates over $\mathcal{X}$ mixes fast to the true conditional distribution. This fast mixing guarantee can hold in cases when global mixing is provably slow. We formalize the statement and quantify the conditional mixing rate. We further show that conditional mixing can have interesting implications for sampling from mixtures of Gaussians, parameter estimation for Gaussian mixture models, and Gibbs-sampling with well-connected local minima.

We consider the stochastic gradient descent (SGD) algorithm driven by a general stochastic sequence, including i.i.d noise and random walk on an arbitrary graph, among others; and analyze it in the asymptotic sense. Specifically, we employ the notion of `efficiency ordering', a well-analyzed tool for comparing the performance of Markov Chain Monte Carlo (MCMC) samplers, for SGD algorithms in the form of Loewner ordering of covariance matrices associated with the scaled iterate errors in the long term. Using this ordering, we show that input sequences that are more efficient for MCMC sampling also lead to smaller covariance of the errors for SGD algorithms in the limit. This also suggests that an arbitrarily weighted MSE of SGD iterates in the limit becomes smaller when driven by more efficient chains. Our finding is of particular interest in applications such as decentralized optimization and swarm learning, where SGD is implemented in a random walk fashion on the underlying communication graph for cost issues and/or data privacy. We demonstrate how certain non-Markovian processes, for which typical mixing-time based non-asymptotic bounds are intractable, can outperform their Markovian counterparts in the sense of efficiency ordering for SGD. We show the utility of our method by applying it to gradient descent with shuffling and mini-batch gradient descent, reaffirming key results from existing literature under a unified framework. Empirically, we also observe efficiency ordering for variants of SGD such as accelerated SGD and Adam, open up the possibility of extending our notion of efficiency ordering to a broader family of stochastic optimization algorithms.

Haplotype assembly and viral quasispecies reconstruction are challenging tasks concerned with analysis of genomic mixtures using sequencing data. High-throughput sequencing technologies generate enormous amounts of short fragments (reads) which essentially oversample components of a mixture; the representation redundancy enables reconstruction of the components (haplotypes, viral strains). The reconstruction problem, known to be NP-hard, boils down to grouping together reads originating from the same component in a mixture. Existing methods struggle to solve this problem with required level of accuracy and low runtimes; the problem is becoming increasingly more challenging as the number and length of the components increase. This paper proposes a read clustering method based on a convolutional auto-encoder designed to first project sequenced fragments to a low-dimensional space and then estimate the probability of the read origin using learned embedded features. The components are reconstructed by finding consensus sequences that agglomerate reads from the same origin. Mini-batch stochastic gradient descent and dimension reduction of reads allow the proposed method to efficiently deal with massive numbers of long reads. Experiments on simulated, semi-experimental and experimental data demonstrate the ability of the proposed method to accurately reconstruct haplotypes and viral quasispecies, often demonstrating superior performance compared to state-of-the-art methods. Source codes are available at https://github.com/WuLoli/CAECseq.

We study the complexity of finding the global solution to stochastic nonconvex optimization when the objective function satisfies global Kurdyka-{\L}ojasiewicz (KL) inequality and the queries from stochastic gradient oracles satisfy mild expected smoothness assumption. We first introduce a general framework to analyze Stochastic Gradient Descent (SGD) and its associated nonlinear dynamics under the setting. As a byproduct of our analysis, we obtain a sample complexity of $\mathcal{O}(\epsilon^{-(4-\alpha)/\alpha})$ for SGD when the objective satisfies the so called $\alpha$-P{\L} condition, where $\alpha$ is the degree of gradient domination. Furthermore, we show that a modified SGD with variance reduction and restarting (PAGER) achieves an improved sample complexity of $\mathcal{O}(\epsilon^{-2/\alpha})$ when the objective satisfies the average smoothness assumption. This leads to the first optimal algorithm for the important case of $\alpha=1$ which appears in applications such as policy optimization in reinforcement learning.

Finding diverse and representative Pareto solutions from the Pareto front is a key challenge in multi-objective optimization (MOO). In this work, we propose a novel gradient-based algorithm for profiling Pareto front by using Stein variational gradient descent (SVGD). We also provide a counterpart of our method based on Langevin dynamics. Our methods iteratively update a set of points in a parallel fashion to push them towards the Pareto front using multiple gradient descent, while encouraging the diversity between the particles by using the repulsive force mechanism in SVGD, or diffusion noise in Langevin dynamics. Compared with existing gradient-based methods that require predefined preference functions, our method can work efficiently in high dimensional problems, and can obtain more diverse solutions evenly distributed in the Pareto front. Moreover, our methods are theoretically guaranteed to converge to the Pareto front. We demonstrate the effectiveness of our method, especially the SVGD algorithm, through extensive experiments, showing its superiority over existing gradient-based algorithms.

The Maximum Entropy (Max-Ent) framework has been effectively employed in a variety of Reinforcement Learning (RL) tasks. In this paper, we first propose a novel Max-Ent framework for policy evaluation in a distributional RL setting, named (D-Max-Ent PE). We derive a generalization-error bound that depends on the complexity of the representation employed, showing that this framework can explicitly take into account the features used to represent the state space while evaluating a policy. Then, we exploit these favorable properties to drive the representation learning of the state space in a Structural Risk Minimization fashion. We employ state-aggregation functions as feature functions and we specialize the D-Max-Ent approach into an algorithm, named, which constructs a progressively finer-grained representation of the state space by balancing the trade-off between preserving information (bias) and reducing the effective number of states, i.e., the complexity of the representation space (variance). Finally, we report the results of some illustrative numerical simulations, showing that the proposed algorithm matches the expected theoretical behavior and highlighting the relationship between aggregations and sample regimes.