Recent sequential pattern mining methods have used the minimum description length (MDL) principle to define an encoding scheme which describes an algorithm for mining the most compressing patterns in a database. We present a novel subsequence interleaving model based on a probabilistic model of the sequence database, which allows us to search for the most compressing set of patterns without designing a specific encoding scheme. Our proposed algorithm is able to efficiently mine the most relevant sequential patterns and rank them using an associated measure of interestingness. The efficient inference in our model is a direct result of our use of a structural expectation-maximization framework, in which the expectation-step takes the form of a submodular optimization problem subject to a coverage constraint. We show on both synthetic and real world datasets that our model mines a set of sequential patterns with low spuriousness and redundancy, high interpretability and usefulness in real-world applications. Furthermore, we demonstrate that the quality of the patterns from our approach is comparable to, if not better than, existing state of the art sequential pattern mining algorithms.

It is neuroscience dogma that the brain's computational mechanics are implemented by the complex dynamics of its spiking neural networks. As a consequence, detailed knowledge of the spiking activity for "as-many-neurons-as-possible" during behavior is seen as essential to understand how the brain receives and transforms information. Electrophysiological methods that record spiking activity extracellularly have been one of the most significant tools for exploring the correlations between behavior and neural activity and there has been a constant drive to record from more neurons, for longer times, from a host of neural regions, in diverse physiological conditions, and from many different species. This trend was recently accelerated by new microfabricated recording probes that extend the standard single electrode and tetrode devices (Recce 1989) with integrated electronics to produce devices with thousands of recording sites (Ruther 2015, Alivisatos 2013). The new generation of recording tools brings with it the challenge of extracting meaningful physiological signals from the resulting (big) data sets.

Machine learning is a very hot topic for many key reasons, and because it provides the ability to automatically obtain deep insights, recognize unknown patterns, and create high performing predictive models from data, all without requiring explicit programming instructions. This is a summary (with links) to an article series that's intended to be a comprehensive, in-depth guide to machine learning, and should be useful to everyone from business executives to machine learning practitioners. It covers virtually all aspects of machine learning (and many related fields) at a high level, and should serve as a sufficient introduction or reference to the terminology, concepts, tools, considerations, and techniques in the field. The first chapter of the series starts with both a formal and informal definition of machine learning. This is followed by a discussion of the machine learning process end-to-end, the different types of machine learning, potential goals and outputs, and a categorized overview of the most widely used machine learning algorithms.

Probabilistic Temporal Tensor Factorization (PTTF) is an effective algorithm to model the temporal tensor data. It leverages a time constraint to capture the evolving properties of tensor data. Nowadays the exploding dataset demands a large scale PTTF analysis, and a parallel solution is critical to accommodate the trend. Whereas, the parallelization of PTTF still remains unexplored. In this paper, we propose a simple yet efficient Parallel Probabilistic Temporal Tensor Factorization, referred to as P$^2$T$^2$F, to provide a scalable PTTF solution. P$^2$T$^2$F is fundamentally disparate from existing parallel tensor factorizations by considering the probabilistic decomposition and the temporal effects of tensor data. It adopts a new tensor data split strategy to subdivide a large tensor into independent sub-tensors, the computation of which is inherently parallel. We train P$^2$T$^2$F with an efficient algorithm of stochastic Alternating Direction Method of Multipliers, and show that the convergence is guaranteed. Experiments on several real-word tensor datasets demonstrate that P$^2$T$^2$F is a highly effective and efficiently scalable algorithm dedicated for large scale probabilistic temporal tensor analysis.

Social media services such as Twitter are a valuable source of information for decision support systems. Many studies have shown that this also holds for the medical domain, where Twitter is considered a viable tool for public health officials to sift through relevant information for the early detection, management, and control of epidemic outbreaks. This is possible due to the inherent capability of social media services to transmit information faster than traditional channels. However, the majority of current studies have limited their scope to the detection of common and seasonal health recurring events (e.g., Influenza-like Illness), partially due to the noisy nature of Twitter data, which makes outbreak detection and management very challenging. Within the European project M-Eco, we developed a Twitter-based Epidemic Intelligence (EI) system, which is designed to also handle a more general class of unexpected and aperiodic outbreaks. In particular, we faced three main research challenges in this endeavor: 1) dynamic classification to manage terminology evolution of Twitter messages, 2) alert generation to produce reliable outbreak alerts analyzing the (noisy) tweet time series, and 3) ranking and recommendation to support domain experts for better assessment of the generated alerts. In this paper, we empirically evaluate our proposed approach to these challenges using real-world outbreak datasets and a large collection of tweets. We validate our solution with domain experts, describe our experiences, and give a more realistic view on the benefits and issues of analyzing social media for public health.

Celeste is a procedure for inferring astronomical catalogs that attains state-of-the-art scientific results. To date, Celeste has been scaled to at most hundreds of megabytes of astronomical images: Bayesian posterior inference is notoriously demanding computationally. In this paper, we report on a scalable, parallel version of Celeste, suitable for learning catalogs from modern large-scale astronomical datasets. Our algorithmic innovations include a fast numerical optimization routine for Bayesian posterior inference and a statistically efficient scheme for decomposing astronomical optimization problems into subproblems. Our scalable implementation is written entirely in Julia, a new high-level dynamic programming language designed for scientific and numerical computing. We use Julia's high-level constructs for shared and distributed memory parallelism, and demonstrate effective load balancing and efficient scaling on up to 8192 Xeon cores on the NERSC Cori supercomputer.

Direct contextual policy search methods learn to improve policy parameters and simultaneously generalize these parameters to different context or task variables. However, learning from high-dimensional context variables, such as camera images, is still a prominent problem in many real-world tasks. A naive application of unsupervised dimensionality reduction methods to the context variables, such as principal component analysis, is insufficient as task-relevant input may be ignored. In this paper, we propose a contextual policy search method in the model-based relative entropy stochastic search framework with integrated dimensionality reduction. We learn a model of the reward that is locally quadratic in both the policy parameters and the context variables. Furthermore, we perform supervised linear dimensionality reduction on the context variables by nuclear norm regularization. The experimental results show that the proposed method outperforms naive dimensionality reduction via principal component analysis and a state-of-the-art contextual policy search method.

The statistically equivalent signature (SES) algorithm is a method for feature selection inspired by the principles of constrained-based learning of Bayesian Networks. Most of the currently available feature-selection methods return only a single subset of features, supposedly the one with the highest predictive power. We argue that in several domains multiple subsets can achieve close to maximal predictive accuracy, and that arbitrarily providing only one has several drawbacks. The SES method attempts to identify multiple, predictive feature subsets whose performances are statistically equivalent. Under that respect SES subsumes and extends previous feature selection algorithms, like the max-min parent children algorithm. SES is implemented in an homonym function included in the R package MXM, standing for mens ex machina, meaning 'mind from the machine' in Latin. The MXM implementation of SES handles several data-analysis tasks, namely classification, regression and survival analysis. In this paper we present the SES algorithm, its implementation, and provide examples of use of the SES function in R. Furthermore, we analyze three publicly available data sets to illustrate the equivalence of the signatures retrieved by SES and to contrast SES against the state-of-the-art feature selection method LASSO. Our results provide initial evidence that the two methods perform comparably well in terms of predictive accuracy and that multiple, equally predictive signatures are actually present in real world data.

Learning incorporates a broad range of complex procedures. Machine learning (ML) is a subdivision of artificial intelligence based on the biological learning process. The ML approach deals with the design of algorithms to learn from machine readable data. ML covers main domains such as data mining, difficult-to-program applications, and software applications. It is a collection of a variety of algorithms (e.g.

H2O Sparkling Water supports a wide array of algorithms, and as illustrated above it's easy to chain these functions together with dplyr pipelines. To learn more see the H2O Sparkling Water section.