Clustering is one of the most common unsupervised learning tasks in machine learning and data mining. Clustering algorithms have been used in a plethora of applications across several scientific fields. However, there has been limited research in the clustering of point patterns - sets or multi-sets of unordered elements - that are found in numerous applications and data sources. In this paper, we propose two approaches for clustering point patterns. The first is a non-parametric method based on novel distances for sets. The second is a model-based approach, formulated via random finite set theory, and solved by the Expectation-Maximization algorithm. Numerical experiments show that the proposed methods perform well on both simulated and real data.

As enjoying the closed form solution, least squares support vector machine (LSSVM) has been widely used for classification and regression problems having the comparable performance with other types of SVMs. However, LSSVM has two drawbacks: sensitive to outliers and lacking sparseness. Robust LSSVM (R-LSSVM) overcomes the first partly via nonconvex truncated loss function, but the current algorithms for R-LSSVM with the dense solution are faced with the second drawback and are inefficient for training large-scale problems. In this paper, we interpret the robustness of R-LSSVM from a re-weighted viewpoint and give a primal R-LSSVM by the representer theorem. The new model may have sparse solution if the corresponding kernel matrix has low rank. Then approximating the kernel matrix by a low-rank matrix and smoothing the loss function by entropy penalty function, we propose a convergent sparse R-LSSVM (SR-LSSVM) algorithm to achieve the sparse solution of primal R-LSSVM, which overcomes two drawbacks of LSSVM simultaneously. The proposed algorithm has lower complexity than the existing algorithms and is very efficient for training large-scale problems. Many experimental results illustrate that SR-LSSVM can achieve better or comparable performance with less training time than related algorithms, especially for training large scale problems.

Stochastic Gradient Descent (SGD) is widely used in machine learning problems to efficiently perform empirical risk minimization, yet, in practice, SGD is known to stall before reaching the actual minimizer of the empirical risk. SGD stalling has often been attributed to its sensitivity to the conditioning of the problem; however, as we demonstrate, SGD will stall even when applied to a simple linear regression problem with unity condition number for standard learning rates. Thus, in this work, we numerically demonstrate and mathematically argue that stalling is a crippling and generic limitation of SGD and its variants in practice. Once we have established the problem of stalling, we generalize an existing framework for hedging against its effects, which (1) deters SGD and its variants from stalling, (2) still provides convergence guarantees, and (3) makes SGD and its variants more practical methods for minimization.

In this work a robust clustering algorithm for stationary time series is proposed. The algorithm is based on the use of estimated spectral densities, which are considered as functional data, as the basic characteristic of stationary time series for clustering purposes. A robust algorithm for functional data is then applied to the set of spectral densities. Trimming techniques and restrictions on the scatter within groups reduce the effect of noise in the data and help to prevent the identification of spurious clusters. The procedure is tested in a simulation study, and is also applied to a real data set.

This paper presents a novel model for multimodal learning based on gated neural networks. The Gated Multimodal Unit (GMU) model is intended to be used as an internal unit in a neural network architecture whose purpose is to find an intermediate representation based on a combination of data from different modalities. The GMU learns to decide how modalities influence the activation of the unit using multiplicative gates. It was evaluated on a multilabel scenario for genre classification of movies using the plot and the poster. The GMU improved the macro f-score performance of single-modality approaches and outperformed other fusion strategies, including mixture of experts models. Along with this work, the MM-IMDb dataset is released which, to the best of our knowledge, is the largest publicly available multimodal dataset for genre prediction on movies.

So bringing them together will make for an awesome combination! Let's work out how to deal with this. To follow this post you'll need the following packages: Our example will be to try and predict whether tumours are cancerous or not using the Breast Cancer Wisconsin (Diagnostic) Data Set. For this example, we'll use pipelearner to perform a grid search of some xgboost hyperparameters. Grid searching is easy with pipelearner.

Machine learning has been gaining traction in recent years to meet the demand for tools that can efficiently analyze and make sense of the ever-growing databases of biomedical data in health care systems around the world. However, effectively using machine learning methods requires considerable domain expertise, which can be a barrier of entry for bioinformaticians new to computational data science methods. Therefore, off-the-shelf tools that make machine learning more accessible can prove invaluable for bioinformaticians. To this end, we have developed an open source pipeline optimization tool (TPOT-MDR) that uses genetic programming to automatically design machine learning pipelines for bioinformatics studies. In TPOT-MDR, we implement Multifactor Dimensionality Reduction (MDR) as a feature construction method for modeling higher-order feature interactions, and combine it with a new expert knowledge-guided feature selector for large biomedical data sets. We demonstrate TPOT-MDR's capabilities using a combination of simulated and real world data sets from human genetics and find that TPOT-MDR significantly outperforms modern machine learning methods such as logistic regression and eXtreme Gradient Boosting (XGBoost). We further analyze the best pipeline discovered by TPOT-MDR for a real world problem and highlight TPOT-MDR's ability to produce a high-accuracy solution that is also easily interpretable.

The use of Bayesian methods in large-scale data settings is attractive because of the rich hierarchical models, uncertainty quantification, and prior specification they provide. Standard Bayesian inference algorithms are computationally expensive, however, making their direct application to large datasets difficult or infeasible. Recent work on scaling Bayesian inference has focused on modifying the underlying algorithms to, for example, use only a random data subsample at each iteration. We leverage the insight that data is often redundant to instead obtain a weighted subset of the data (called a coreset) that is much smaller than the original dataset. We can then use this small coreset in any number of existing posterior inference algorithms without modification. In this paper, we develop an efficient coreset construction algorithm for Bayesian logistic regression models. We provide theoretical guarantees on the size and approximation quality of the coreset -- both for fixed, known datasets, and in expectation for a wide class of data generative models. Crucially, the proposed approach also permits efficient construction of the coreset in both streaming and parallel settings, with minimal additional effort. We demonstrate the efficacy of our approach on a number of synthetic and real-world datasets, and find that, in practice, the size of the coreset is independent of the original dataset size. Furthermore, constructing the coreset takes a negligible amount of time compared to that required to run MCMC on it.

Many dimensionality reduction or manifold learning algorithms optimize for retaining the pairwise similarities, distances, or local neighborhoods of data points. Spectral methods like Kernel PCA (kPCA) or isomap achieve this by computing the singular value decomposition (SVD) of some similarity matrix to obtain a low dimensional representation of the original data. However, this is computationally expensive if a lot of training examples are available and, additionally, representations for new (out-of-sample) data points can only be created when the similarities to the original training examples can be computed. We introduce similarity encoders (SimEc), which learn similarity preserving representations by using a feed-forward neural network to map data into an embedding space where the original similarities can be approximated linearly. The model optimizes the same objective as kPCA but in the process it learns a linear or non-linear embedding function (in the form of the tuned neural network), with which the representations of novel data points can be computed - even if the original pairwise similarities of the training set were generated by an unknown process such as human ratings. By creating embeddings for both image and text datasets, we demonstrate that SimEc can, on the one hand, reach the same solution as spectral methods, and, on the other hand, obtain meaningful embeddings from similarities based on human labels.