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 Statistical Learning


Robust Clustering for Time Series Using Spectral Densities and Functional Data Analysis

arXiv.org Machine Learning

In this work a robust clustering algorithm for stationary time series is proposed. The algorithm is based on the use of estimated spectral densities, which are considered as functional data, as the basic characteristic of stationary time series for clustering purposes. A robust algorithm for functional data is then applied to the set of spectral densities. Trimming techniques and restrictions on the scatter within groups reduce the effect of noise in the data and help to prevent the identification of spurious clusters. The procedure is tested in a simulation study, and is also applied to a real data set.


Gated Multimodal Units for Information Fusion

arXiv.org Machine Learning

This paper presents a novel model for multimodal learning based on gated neural networks. The Gated Multimodal Unit (GMU) model is intended to be used as an internal unit in a neural network architecture whose purpose is to find an intermediate representation based on a combination of data from different modalities. The GMU learns to decide how modalities influence the activation of the unit using multiplicative gates. It was evaluated on a multilabel scenario for genre classification of movies using the plot and the poster. The GMU improved the macro f-score performance of single-modality approaches and outperformed other fusion strategies, including mixture of experts models. Along with this work, the MM-IMDb dataset is released which, to the best of our knowledge, is the largest publicly available multimodal dataset for genre prediction on movies.


On SGD's Failure in Practice: Characterizing and Overcoming Stalling

arXiv.org Machine Learning

Stochastic Gradient Descent (SGD) is widely used in machine learning problems to efficiently perform empirical risk minimization, yet, in practice, SGD is known to stall before reaching the actual minimizer of the empirical risk. SGD stalling has often been attributed to its sensitivity to the conditioning of the problem; however, as we demonstrate, SGD will stall even when applied to a simple linear regression problem with unity condition number for standard learning rates. Thus, in this work, we numerically demonstrate and mathematically argue that stalling is a crippling and generic limitation of SGD and its variants in practice. Once we have established the problem of stalling, we generalize an existing framework for hedging against its effects, which (1) deters SGD and its variants from stalling, (2) still provides convergence guarantees, and (3) makes SGD and its variants more practical methods for minimization.


With our powers combined! xgboost and pipelearner • blogR

#artificialintelligence

So bringing them together will make for an awesome combination! Let's work out how to deal with this. To follow this post you'll need the following packages: Our example will be to try and predict whether tumours are cancerous or not using the Breast Cancer Wisconsin (Diagnostic) Data Set. For this example, we'll use pipelearner to perform a grid search of some xgboost hyperparameters. Grid searching is easy with pipelearner.



Coresets for Scalable Bayesian Logistic Regression

arXiv.org Machine Learning

The use of Bayesian methods in large-scale data settings is attractive because of the rich hierarchical models, uncertainty quantification, and prior specification they provide. Standard Bayesian inference algorithms are computationally expensive, however, making their direct application to large datasets difficult or infeasible. Recent work on scaling Bayesian inference has focused on modifying the underlying algorithms to, for example, use only a random data subsample at each iteration. We leverage the insight that data is often redundant to instead obtain a weighted subset of the data (called a coreset) that is much smaller than the original dataset. We can then use this small coreset in any number of existing posterior inference algorithms without modification. In this paper, we develop an efficient coreset construction algorithm for Bayesian logistic regression models. We provide theoretical guarantees on the size and approximation quality of the coreset -- both for fixed, known datasets, and in expectation for a wide class of data generative models. Crucially, the proposed approach also permits efficient construction of the coreset in both streaming and parallel settings, with minimal additional effort. We demonstrate the efficacy of our approach on a number of synthetic and real-world datasets, and find that, in practice, the size of the coreset is independent of the original dataset size. Furthermore, constructing the coreset takes a negligible amount of time compared to that required to run MCMC on it.


Learning similarity preserving representations with neural similarity encoders

arXiv.org Machine Learning

Many dimensionality reduction or manifold learning algorithms optimize for retaining the pairwise similarities, distances, or local neighborhoods of data points. Spectral methods like Kernel PCA (kPCA) or isomap achieve this by computing the singular value decomposition (SVD) of some similarity matrix to obtain a low dimensional representation of the original data. However, this is computationally expensive if a lot of training examples are available and, additionally, representations for new (out-of-sample) data points can only be created when the similarities to the original training examples can be computed. We introduce similarity encoders (SimEc), which learn similarity preserving representations by using a feed-forward neural network to map data into an embedding space where the original similarities can be approximated linearly. The model optimizes the same objective as kPCA but in the process it learns a linear or non-linear embedding function (in the form of the tuned neural network), with which the representations of novel data points can be computed - even if the original pairwise similarities of the training set were generated by an unknown process such as human ratings. By creating embeddings for both image and text datasets, we demonstrate that SimEc can, on the one hand, reach the same solution as spectral methods, and, on the other hand, obtain meaningful embeddings from similarities based on human labels.


Toward the automated analysis of complex diseases in genome-wide association studies using genetic programming

arXiv.org Machine Learning

Machine learning has been gaining traction in recent years to meet the demand for tools that can efficiently analyze and make sense of the ever-growing databases of biomedical data in health care systems around the world. However, effectively using machine learning methods requires considerable domain expertise, which can be a barrier of entry for bioinformaticians new to computational data science methods. Therefore, off-the-shelf tools that make machine learning more accessible can prove invaluable for bioinformaticians. To this end, we have developed an open source pipeline optimization tool (TPOT-MDR) that uses genetic programming to automatically design machine learning pipelines for bioinformatics studies. In TPOT-MDR, we implement Multifactor Dimensionality Reduction (MDR) as a feature construction method for modeling higher-order feature interactions, and combine it with a new expert knowledge-guided feature selector for large biomedical data sets. We demonstrate TPOT-MDR's capabilities using a combination of simulated and real world data sets from human genetics and find that TPOT-MDR significantly outperforms modern machine learning methods such as logistic regression and eXtreme Gradient Boosting (XGBoost). We further analyze the best pipeline discovered by TPOT-MDR for a real world problem and highlight TPOT-MDR's ability to produce a high-accuracy solution that is also easily interpretable.


Linear Regression Geometry

@machinelearnbot

Linear Regression is about fitting a straight line from the scatter plot,key challenge here what constitutes a best fit line in other words what would be best values of and . The general idea is to find a line ( its coefficients) such that total error is at the minimum. There is a standard explanation that we need to minimize the total square error, which means we have to solve a minimization problem to solve optimal values of the coefficients. Obviously this method involves quite a lot of mathematics or calculus etc. which would not provide any institution or illustration, instead we will use a little of vector algebra and associated geometry to build the intuition about the solution.


End-to-end speech recognition with neon - Nervana

#artificialintelligence

Thus, given a sequence of frames corresponding to an utterance, the model is required to produce, for each frame, a probability distribution over the alphabet. During the training phase, the softmax outputs are fed into a CTC cost function (more on this shortly) which uses the actual transcripts to (i) score the model's predictions, and (ii) generate an error signal quantifying the accuracy of the model's predictions. The overall goal is to train the model to increase the overall score of its predictions relative to the actual transcripts. Empirically, we have found that using stochastic gradient descent with momentum paired with gradient clipping leads to the best performing models. Deeper networks (seven layers or more) also tend to perform better in general.