Consider a dataset where data is collected on multiple features of multiple individuals over multiple times. This type of data can be represented as a three dimensional individual/feature/time tensor and has become increasingly prominent in various areas of science. The tensor biclustering problem computes a subset of individuals and a subset of features whose signal trajectories over time lie in a low-dimensional subspace, modeling similarity among the signal trajectories while allowing different scalings across different individuals or different features. We study the information-theoretic limit of this problem under a generative model. Moreover, we propose an efficient spectral algorithm to solve the tensor biclustering problem and analyze its achievability bound in an asymptotic regime. Finally, we show the efficiency of our proposed method in several synthetic and real datasets.

Mechanistic models of single-neuron dynamics have been extensively studied in computational neuroscience. However, identifying which models can quantitatively reproduce empirically measured data has been challenging. We propose to overcome this limitation by using likelihood-free inference approaches (also known as Approximate Bayesian Computation, ABC) to perform full Bayesian inference on single-neuron models. Our approach builds on recent advances in ABC by learning a neural network which maps features of the observed data to the posterior distribution over parameters. We learn a Bayesian mixture-density network approximating the posterior over multiple rounds of adaptively chosen simulations. Furthermore, we propose an efficient approach for handling missing features and parameter settings for which the simulator fails, as well as a strategy for automatically learning relevant features using recurrent neural networks. On synthetic data, our approach efficiently estimates posterior distributions and recovers ground-truth parameters. On in-vitro recordings of membrane voltages, we recover multivariate posteriors over biophysical parameters, which yield model-predicted voltage traces that accurately match empirical data. Our approach will enable neuroscientists to perform Bayesian inference on complex neuron models without having to design model-specific algorithms, closing the gap between mechanistic and statistical approaches to single-neuron modelling.

Hearing an object falling onto the ground, humans can recover rich information including its rough shape, material, and falling height. In this paper, we build machines to approximate such competency. We first mimic human knowledge of the physical world by building an efficient, physics-based simulation engine. Then, we present an analysis-by-synthesis approach to infer properties of the falling object. We further accelerate the process by learning a mapping from a sound wave to object properties, and using the predicted values to initialize the inference. This mapping can be viewed as an approximation of human commonsense learned from past experience. Our model performs well on both synthetic audio clips and real recordings without requiring any annotated data. We conduct behavior studies to compare human responses with ours on estimating object shape, material, and falling height from sound. Our model achieves near-human performance.

Alternating direction method of multipliers (ADMM) has received tremendous interest for solving numerous problems in machine learning, statistics and signal processing. However, it is known that the performance of ADMM and many of its variants is very sensitive to the penalty parameter of a quadratic penalty applied to the equality constraints. Although several approaches have been proposed for dynamically changing this parameter during the course of optimization, they do not yield theoretical improvement in the convergence rate and are not directly applicable to stochastic ADMM. In this paper, we develop a new ADMM and its linearized variant with a new adaptive scheme to update the penalty parameter. Our methods can be applied under both deterministic and stochastic optimization settings for structured non-smooth objective function. The novelty of the proposed scheme lies at that it is adaptive to a local sharpness property of the objective function, which marks the key difference from previous adaptive scheme that adjusts the penalty parameter per-iteration based on certain conditions on iterates. On theoretical side, given the local sharpness characterized by an exponent $\theta\in(0, 1]$, we show that the proposed ADMM enjoys an improved iteration complexity of $\widetilde O(1/\epsilon^{1-\theta})$\footnote{$\widetilde O()$ suppresses a logarithmic factor.} in the deterministic setting and an iteration complexity of $\widetilde O(1/\epsilon^{2(1-\theta)})$ in the stochastic setting without smoothness and strong convexity assumptions. The complexity in either setting improves that of the standard ADMM which only uses a fixed penalty parameter. On the practical side, we demonstrate that the proposed algorithms converge comparably to, if not much faster than, ADMM with a fine-tuned fixed penalty parameter.

We present a novel technique for learning the mass matrices in samplers obtained from discretized dynamics that preserve some energy function. Existing adaptive samplers use Riemannian preconditioning techniques, where the mass matrices are functions of the parameters being sampled. This leads to significant complexities in the energy reformulations and resultant dynamics, often leading to implicit systems of equations and requiring inversion of high-dimensional matrices in the leapfrog steps. Our approach provides a simpler alternative, by using existing dynamics in the sampling step of a Monte Carlo EM framework, and learning the mass matrices in the M step with a novel online technique. We also propose a way to adaptively set the number of samples gathered in the E step, using sampling error estimates from the leapfrog dynamics. Along with a novel stochastic sampler based on Nos\'{e}-Poincar\'{e} dynamics, we use this framework with standard Hamiltonian Monte Carlo (HMC) as well as newer stochastic algorithms such as SGHMC and SGNHT, and show strong performance on synthetic and real high-dimensional sampling scenarios; we achieve sampling accuracies comparable to Riemannian samplers while being significantly faster.

Several important applications, such as streaming PCA and semidefinite programming, involve a large-scale positive-semidefinite (psd) matrix that is presented as a sequence of linear updates. Because of storage limitations, it may only be possible to retain a sketch of the psd matrix. This paper develops a new algorithm for fixed-rank psd approximation from a sketch. The approach combines the Nyström approximation with a novel mechanism for rank truncation. Theoretical analysis establishes that the proposed method can achieve any prescribed relative error in the Schatten 1-norm and that it exploits the spectral decay of the input matrix. Computer experiments show that the proposed method dominates alternative techniques for fixed-rank psd matrix approximation across a wide range of examples.

We introduce a hierarchical model which allows to estimate a group-average piecewise-geodesic trajectory in the Riemannian space of measurements and individual variability. This model falls into the well defined mixed-effect models. The subject-specific trajectories are defined through spatial and temporal transformations of the group-average piecewise-geodesic path, component by component. Thus we can apply our model to a wide variety of situations. Due to the non-linearity of the model, we use the Stochastic Approximation Expectation-Maximization algorithm to estimate the model parameters. Experiments on synthetic data validate this choice. The model is then applied to the metastatic renal cancer chemotherapy monitoring: we run estimations on RECIST scores of treated patients and estimate the time they escape from the treatment. Experiments highlight the role of the different parameters on the response to treatment.

We present a new approach to learn compressible representations in deep architectures with an end-to-end training strategy. Our method is based on a soft (continuous) relaxation of quantization and entropy, which we anneal to their discrete counterparts throughout training. We showcase this method for two challenging applications: Image compression and neural network compression. While these tasks have typically been approached with different methods, our soft-to-hard quantization approach gives results competitive with the state-of-the-art for both.

Spectral decomposition of the Koopman operator is attracting attention as a tool for the analysis of nonlinear dynamical systems. Dynamic mode decomposition is a popular numerical algorithm for Koopman spectral analysis; however, we often need to prepare nonlinear observables manually according to the underlying dynamics, which is not always possible since we may not have any a priori knowledge about them. In this paper, we propose a fully data-driven method for Koopman spectral analysis based on the principle of learning Koopman invariant subspaces from observed data. To this end, we propose minimization of the residual sum of squares of linear least-squares regression to estimate a set of functions that transforms data into a form in which the linear regression fits well. We introduce an implementation with neural networks and evaluate performance empirically using nonlinear dynamical systems and applications.

Although gradient descent (GD) almost always escapes saddle points asymptotically [Leeet al., 2016], this paper shows that even with fairly natural random initialization schemes and non-pathological functions, GD can be significantly slowed down by saddle points, taking exponential time to escape. On the other hand, gradient descent with perturbations [Ge et al., 2015, Jin et al., 2017] is not slowed down by saddle points--it can find an approximate local minimizer in polynomial time. This result implies that GD is inherently slower than perturbed GD, and justifies the importance of adding perturbations for efficient non-convex optimization. While our focus is theoretical, we also present experiments that illustrate our theoretical findings.