Slow running or straggler tasks can significantly reduce computation speed in distributed computation. Recently, coding-theory-inspired approaches have been applied to mitigate the effect of straggling, through embedding redundancy in certain linear computational steps of the optimization algorithm, thus completing the computation without waiting for the stragglers. In this paper, we propose an alternate approach where we embed the redundancy directly in the data itself, and allow the computation to proceed completely oblivious to encoding. We propose several encoding schemes, and demonstrate that popular batch algorithms, such as gradient descent and L-BFGS, applied in a coding-oblivious manner, deterministically achieve sample path linear convergence to an approximate solution of the original problem, using an arbitrarily varying subset of the nodes at each iteration. Moreover, this approximation can be controlled by the amount of redundancy and the number of nodes used in each iteration. We provide experimental results demonstrating the advantage of the approach over uncoded and data replication strategies.

This paper presents a probabilistic-graphical model that can be used to infer characteristics of instantaneous brain activity by jointly analyzing spatial and temporal dependencies observed in electroencephalograms (EEG). Specifically, we describe a factor-graph-based model with customized factor-functions defined based on domain knowledge, to infer pathologic brain activity with the goal of identifying seizure-generating brain regions in epilepsy patients. We utilize an inference technique based on the graph-cut algorithm to exactly solve graph inference in polynomial time. We validate the model by using clinically collected intracranial EEG data from 29 epilepsy patients to show that the model correctly identifies seizure-generating brain regions. Our results indicate that our model outperforms two conventional approaches used for seizure-onset localization (5-7% better AUC: 0.72, 0.67, 0.65) and that the proposed inference technique provides 3-10% gain in AUC (0.72, 0.62, 0.69) compared to sampling-based alternatives.

Most distributed machine learning systems nowadays, including TensorFlow and CNTK, are built in a centralized fashion. One bottleneck of centralized algorithms lies on high communication cost on the central node. Motivated by this, we ask, can decentralized algorithms be faster than its centralized counterpart? Although decentralized PSGD (D-PSGD) algorithms have been studied by the control community, existing analysis and theory do not show any advantage over centralized PSGD (C-PSGD) algorithms, simply assuming the application scenario where only the decentralized network is available. In this paper, we study a D-PSGD algorithm and provide the first theoretical analysis that indicates a regime in which decentralized algorithms might outperform centralized algorithms for distributed stochastic gradient descent. This is because D-PSGD has comparable total computational complexities to C-PSGD but requires much less communication cost on the busiest node. We further conduct an empirical study to validate our theoretical analysis across multiple frameworks (CNTK and Torch), different network configurations, and computation platforms up to 112 GPUs. On network configurations with low bandwidth or high latency, D-PSGD can be up to one order of magnitude faster than its well-optimized centralized counterparts.

The Gaussian process state space model (GPSSM) is a non-linear dynamical system, where unknown transition and/or measurement mappings are described by GPs. Most research in GPSSMs has focussed on the state estimation problem, i.e., computing a posterior of the latent state given the model. However, the key challenge in GPSSMs has not been satisfactorily addressed yet: system identification, i.e., learning the model. To address this challenge, we impose a structured Gaussian variational posterior distribution over the latent states, which is parameterised by a recognition model in the form of a bi-directional recurrent neural network. Inference with this structure allows us to recover a posterior smoothed over sequences of data. We provide a practical algorithm for efficiently computing a lower bound on the marginal likelihood using the reparameterisation trick. This further allows for the use of arbitrary kernels within the GPSSM. We demonstrate that the learnt GPSSM can efficiently generate plausible future trajectories of the identified system after only observing a small number of episodes from the true system.

Bayesian optimization has shown success in global optimization of expensive-to-evaluate multimodal objective functions. However, unlike most optimization methods, Bayesian optimization typically does not use derivative information. In this paper we show how Bayesian optimization can exploit derivative information to find good solutions with fewer objective function evaluations. In particular, we develop a novel Bayesian optimization algorithm, the derivative-enabled knowledge-gradient (dKG), which is one-step Bayes-optimal, asymptotically consistent, and provides greater one-step value of information than in the derivative-free setting. dKG accommodates noisy and incomplete derivative information, comes in both sequential and batch forms, and can optionally reduce the computational cost of inference through automatically selected retention of a single directional derivative. We also compute the dKG acquisition function and its gradient using a novel fast discretization-free technique. We show dKG provides state-of-the-art performance compared to a wide range of optimization procedures with and without gradients, on benchmarks including logistic regression, deep learning, kernel learning, and k-nearest neighbors.

We investigate an unsupervised generative approach for network embedding. A multi-task Siamese neural network structure is formulated to connect embedding vectors and our objective to preserve the global node ranking and local proximity of nodes. We provide deeper analysis to connect the proposed proximity objective to link prediction and community detection in the network. We show our model can satisfy the following design properties: scalability, asymmetry, unity and simplicity. Experiment results not only verify the above design properties but also demonstrate the superior performance in learning-to-rank, classification, regression, and link prediction tasks.

We show experimentally that the algorithm CLARANS of Ng and Han (1994) finds better K-medoids solutions than the Voronoi iteration algorithm of Hastie et al. (2001). This finding, along with the similarity between the Voronoi iteration algorithm and Lloyd's K-means algorithm, motivates us to use CLARANS as a K-means initializer. We show that CLARANS outperforms other algorithms on 23/23 datasets with a mean decrease over k-means++ of 30% for initialization mean squared error (MSE) and 3% for final MSE. We introduce algorithmic improvements to CLARANS which improve its complexity and runtime, making it a viable initialization scheme for large datasets.

Large-scale Gaussian process inference has long faced practical challenges due to time and space complexity that is superlinear in dataset size. While sparse variational Gaussian process models are capable of learning from large-scale data, standard strategies for sparsifying the model can prevent the approximation of complex functions. In this work, we propose a novel variational Gaussian process model that decouples the representation of mean and covariance functions in reproducing kernel Hilbert space. We show that this new parametrization generalizes previous models. Furthermore, it yields a variational inference problem that can be solved by stochastic gradient ascent with time and space complexity that is only linear in the number of mean function parameters, regardless of the choice of kernels, likelihoods, and inducing points. This strategy makes the adoption of large-scale expressive Gaussian process models possible. We run several experiments on regression tasks and show that this decoupled approach greatly outperforms previous sparse variational Gaussian process inference procedures.

Existing Markov Chain Monte Carlo (MCMC) methods are either based on general-purpose and domain-agnostic schemes, which can lead to slow convergence, or require hand-crafting of problem-specific proposals by an expert. We propose A-NICE-MC, a novel method to train flexible parametric Markov chain kernels to produce samples with desired properties. First, we propose an efficient likelihood-free adversarial training method to train a Markov chain and mimic a given data distribution. Then, we leverage flexible volume preserving flows to obtain parametric kernels for MCMC. Using a bootstrap approach, we show how to train efficient Markov Chains to sample from a prescribed posterior distribution by iteratively improving the quality of both the model and the samples. A-NICE-MC provides the first framework to automatically design efficient domain-specific MCMC proposals. Empirical results demonstrate that A-NICE-MC combines the strong guarantees of MCMC with the expressiveness of deep neural networks, and is able to significantly outperform competing methods such as Hamiltonian Monte Carlo.

We propose Embedding Propagation (EP), an unsupervised learning framework for graph-structured data. EP learns vector representations of graphs by passing two types of messages between neighboring nodes. Forward messages consist of label representations such as representations of words and other attributes associated with the nodes. Backward messages consist of gradients that result from aggregating the label representations and applying a reconstruction loss. Node representations are finally computed from the representation of their labels. With significantly fewer parameters and hyperparameters an instance of EP is competitive with and often outperforms state of the art unsupervised and semi-supervised learning methods on a range of benchmark data sets.