Statistical Learning
Automatic topography of high-dimensional data sets by non-parametric Density Peak clustering
d'Errico, Maria, Facco, Elena, Laio, Alessandro, Rodriguez, Alex
Data analysis in high-dimensional spaces aims at obtaining a synthetic description of a data set, revealing its main structure and its salient features. We here introduce an approach for charting data spaces, providing a topography of the probability distribution from which the data are harvested. This topography includes information on the number and the height of the probability peaks, the depth of the "valleys" separating them, the relative location of the peaks and their hierarchical organization. The topography is reconstructed by using an unsupervised variant of Density Peak clustering exploiting a non-parametric density estimator, which automatically measures the density in the manifold containing the data. Importantly, the density estimator provides an estimate of the error. This is a key feature, which allows distinguishing genuine probability peaks from density fluctuations due to finite sampling.
Maximum likelihood estimation of a finite mixture of logistic regression models in a continuous data stream
Kaptein, Maurits, Ketelaar, Paul
In marketing we are often confronted with a continuous stream of responses to marketing messages. Such streaming data provide invaluable information regarding message effectiveness and segmentation. However, streaming data are hard to analyze using conventional methods: their high volume and the fact that they are continuously augmented means that it takes considerable time to analyze them. We propose a method for estimating a finite mixture of logistic regression models which can be used to cluster customers based on a continuous stream of responses. This method, which we coin oFMLR, allows segments to be identified in data streams or extremely large static datasets. Contrary to black box algorithms, oFMLR provides model estimates that are directly interpretable. We first introduce oFMLR, explaining in passing general topics such as online estimation and the EM algorithm, making this paper a high level overview of possible methods of dealing with large data streams in marketing practice. Next, we discuss model convergence, identifiability, and relations to alternative, Bayesian, methods; we also identify more general issues that arise from dealing with continuously augmented data sets. Finally, we introduce the oFMLR [R] package and evaluate the method by numerical simulation and by analyzing a large customer clickstream dataset.
Application of R\'enyi and Tsallis Entropies to Topic Modeling Optimization
Thus, large arrays of textual data, which have been rapidly accumulating on the Internet in the last decade, require ever more complex methods for their automatic processing and modeling. For this, a wide range of mathematical tools, including topic models, is used [1], but their properties and behavior remain little studied so far, which makes it impossible to choose the optimal parameters of such models. If, however, we consider the results of topic modeling as nonequilibrium complex systems (since these, as will be shown below, have the characteristics of such systems), this would make it possible to apply to them a whole range of approaches from statistical physics. First of all, these are models for analyzing the processes of self-organization of large ensembles. The basis for such an analysis may be an approach in which the behavior of the topic model of a textual collection as a word ensemble would be determined by thermodynamic functions, such as entropy or free energy. It is known that complex systems can be characterized by exponential and power law distributions, which is especially characteristic for social [2, 3], biological [4, 5] and economic systems [6, 7].
Decision functions from supervised machine learning algorithms as collective variables for accelerating molecular simulations
Sultan, Mohammad M., Pande, Vijay S.
Selection of appropriate collective variables for enhancing molecular simulations remains an unsolved problem in computational biophysics. In particular, picking initial collective variables (CVs) is particularly challenging in higher dimensions. Which atomic coordinates or transforms there of from a list of thousands should one pick for enhanced sampling runs? How does a modeler even begin to pick starting coordinates for investigation? This remains true even in the case of simple two state systems and only increases in difficulty for multi-state systems. In this work, we attempt to solve the initial CV problem using a data-driven approach inspired by supervised machine learning literature. In particular, we show how the decision functions in supervised machine learning (SML) algorithms can be used as initial CVs for accelerated sampling. Using solvated alanine dipeptide and Chignolin mini-protein as our test cases, we illustrate how the distance to the Support Vector Machines decision hyperplane, the output probability estimates from Logistic Regression, and other classifiers may be used to reversibly sample slow structural transitions. We discuss the utility of other SML algorithms that might be useful for identifying CVs for accelerating molecular simulations.
On the Sublinear Convergence of Randomly Perturbed Alternating Gradient Descent to Second Order Stationary Solutions
Lu, Songtao, Hong, Mingyi, Wang, Zhengdao
The alternating gradient descent (AGD) is a simple but popular algorithm which has been applied to problems in optimization, machine learning, data ming, and signal processing, etc. The algorithm updates two blocks of variables in an alternating manner, in which a gradient step is taken on one block, while keeping the remaining block fixed. When the objective function is nonconvex, it is well-known the AGD converges to the first-order stationary solution with a global sublinear rate. In this paper, we show that a variant of AGD-type algorithms will not be trapped by "bad" stationary solutions such as saddle points and local maximum points. In particular, we consider a smooth unconstrained optimization problem, and propose a perturbed AGD (PA-GD) which converges (with high probability) to the set of second-order stationary solutions (SS2) with a global sublinear rate. To the best of our knowledge, this is the first alternating type algorithm which takes $\mathcal{O}(\text{polylog}(d)/\epsilon^{7/3})$ iterations to achieve SS2 with high probability [where polylog$(d)$ is polynomial of the logarithm of dimension $d$ of the problem].
Learning Without Mixing: Towards A Sharp Analysis of Linear System Identification
Simchowitz, Max, Mania, Horia, Tu, Stephen, Jordan, Michael I., Recht, Benjamin
System identification--the problem of estimating the parameters of a dynamical system given a time series of its trajectories-- is a fundamental problem in time-series analysis, control theory, robotics, and reinforcement learning. Despite its importance, sharp, non-asymptotic analyses for the sample complexity of system identification are rare. In particular, it is not known how many trajectories required to identify the parameters of an unknown linear system. Properly characterizing this sample complexity would have profound implications, since accurate error bounds are indispensable for designing robust and high-performing control systems. It is important that the bounds be sharp, in the sense that they do not drastically overestimate the number of required measurements from system trajectories, which are often time-consuming and prohibitively expensive to collect. More broadly, a deeper understand of system identification would inform other statistical problems where one wishes to learn from non-i.i.d. or time-correlated data. We focus on the problem of identifying a discrete-time linear dynamical system from an observed trajectory.
Subspace Network: Deep Multi-Task Censored Regression for Modeling Neurodegenerative Diseases
Sun, Mengying, Baytas, Inci M., Zhan, Liang, Wang, Zhangyang, Zhou, Jiayu
Over the past decade a wide spectrum of machine learning models have been developed to model the neurodegenerative diseases, associating biomarkers, especially non-intrusive neuroimaging markers, with key clinical scores measuring the cognitive status of patients. Multi-task learning (MTL) has been commonly utilized by these studies to address high dimensionality and small cohort size challenges. However, most existing MTL approaches are based on linear models and suffer from two major limitations: 1) they cannot explicitly consider upper/lower bounds in these clinical scores; 2) they lack the capability to capture complicated non-linear interactions among the variables. In this paper, we propose Subspace Network, an efficient deep modeling approach for non-linear multi-task censored regression. Each layer of the subspace network performs a multi-task censored regression to improve upon the predictions from the last layer via sketching a low-dimensional subspace to perform knowledge transfer among learning tasks. Under mild assumptions, for each layer the parametric subspace can be recovered using only one pass of training data. Empirical results demonstrate that the proposed subspace network quickly picks up the correct parameter subspaces, and outperforms state-of-the-arts in predicting neurodegenerative clinical scores using information in brain imaging.
Deep Private-Feature Extraction
Osia, Seyed Ali, Taheri, Ali, Shamsabadi, Ali Shahin, Katevas, Kleomenis, Haddadi, Hamed, Rabiee, Hamid R.
We present and evaluate Deep Private-Feature Extractor (DPFE), a deep model which is trained and evaluated based on information theoretic constraints. Using the selective exchange of information between a user's device and a service provider, DPFE enables the user to prevent certain sensitive information from being shared with a service provider, while allowing them to extract approved information using their model. We introduce and utilize the log-rank privacy, a novel measure to assess the effectiveness of DPFE in removing sensitive information and compare different models based on their accuracy-privacy tradeoff. We then implement and evaluate the performance of DPFE on smartphones to understand its complexity, resource demands, and efficiency tradeoffs. Our results on benchmark image datasets demonstrate that under moderate resource utilization, DPFE can achieve high accuracy for primary tasks while preserving the privacy of sensitive features.
Learning from Between-class Examples for Deep Sound Recognition
Tokozume, Yuji, Ushiku, Yoshitaka, Harada, Tatsuya
Deep learning methods have achieved high performance in sound recognition tasks. Deciding how to feed the training data is important for further performance improvement. We propose a novel learning method for deep sound recognition: Between-Class learning (BC learning). Our strategy is to learn a discriminative feature space by recognizing the between-class sounds as between-class sounds. We generate between-class sounds by mixing two sounds belonging to different classes with a random ratio. We then input the mixed sound to the model and train the model to output the mixing ratio. The advantages of BC learning are not limited only to the increase in variation of the training data; BC learning leads to an enlargement of Fisher's criterion in the feature space and a regularization of the positional relationship among the feature distributions of the classes. The experimental results show that BC learning improves the performance on various sound recognition networks, datasets, and data augmentation schemes, in which BC learning proves to be always beneficial. Furthermore, we construct a new deep sound recognition network (EnvNet-v2) and train it with BC learning. As a result, we achieved a performance surpasses the human level.
Variational Inference based on Robust Divergences
Futami, Futoshi, Sato, Issei, Sugiyama, Masashi
Robustness to outliers is a central issue in real-world machine learning applications. While replacing a model to a heavy-tailed one (e.g., from Gaussian to Student-t) is a standard approach for robustification, it can only be applied to simple models. In this paper, based on Zellner's optimization and variational formulation of Bayesian inference, we propose an outlier-robust pseudo-Bayesian variational method by replacing the Kullback-Leibler divergence used for data fitting to a robust divergence such as the beta- and gamma-divergences. An advantage of our approach is that superior but complex models such as deep networks can also be handled. We theoretically prove that, for deep networks with ReLU activation functions, the \emph{influence function} in our proposed method is bounded, while it is unbounded in the ordinary variational inference. This implies that our proposed method is robust to both of input and output outliers, while the ordinary variational method is not. We experimentally demonstrate that our robust variational method outperforms ordinary variational inference in regression and classification with deep networks.