Statistical Learning
SUSI: Supervised Self-Organizing Maps for Regression and Classification in Python
In many research fields, the sizes of the existing datasets vary widely. Hence, there is a need for machine learning techniques which are well-suited for these different datasets. One possible technique is the self-organizing map (SOM), a type of artificial neural network which is, so far, weakly represented in the field of machine learning. The SOM's unique characteristic is the neighborhood relationship of the output neurons. This relationship improves the ability of generalization on small datasets. SOMs are mostly applied in unsupervised learning and few studies focus on using SOMs as supervised learning approach. Furthermore, no appropriate SOM package is available with respect to machine learning standards and in the widely used programming language Python. In this paper, we introduce the freely available SUpervised Self-organIzing maps (SUSI) Python package which performs supervised regression and classification. The implementation of SUSI is described with respect to the underlying mathematics. Then, we present first evaluations of the SOM for regression and classification datasets from two different domains of geospatial image analysis. Despite the early stage of its development, the SUSI framework performs well and is characterized by only small performance differences between the training and the test datasets. A comparison of the SUSI framework with existing Python and R packages demonstrates the importance of the SUSI framework. In future work, the SUSI framework will be extended, optimized and upgraded e.g. with tools to better understand and visualize the input data as well as the handling of missing and incomplete data.
Intelligent Processing in Vehicular Ad hoc Networks: a Survey
The intelligent Processing technique is more and more attractive to researchers due to its ability to deal with key problems in Vehicular Ad hoc networks. However, several problems in applying intelligent processing technologies in VANETs remain open. The existing applications are comprehensively reviewed and discussed, and classified into different categories in this paper. Their strategies, advantages/disadvantages, and performances are elaborated. By generalizing different tactics in various applications related to different scenarios of VANETs and evaluating their performances, several promising directions for future research have been suggested.
Diversity with Cooperation: Ensemble Methods for Few-Shot Classification
Dvornik, Nikita, Schmid, Cordelia, Mairal, Julien
Few-shot classification consists of learning a predictive model that is able to effectively adapt to a new class, given only a few annotated samples. To solve this challenging problem, meta-learning has become a popular paradigm that advocates the ability to "learn to adapt". Recent works have shown, however, that simple learning strategies without meta-learning could be competitive. In this paper, we go a step further and show that by addressing the fundamental high-variance issue of few-shot learning classifiers, it is possible to significantly outperform current meta-learning techniques. Our approach consists of designing an ensemble of deep networks to leverage the variance of the classifiers, and introducing new strategies to encourage the networks to cooperate, while encouraging prediction diversity. Evaluation is conducted on the mini-ImageNet and CUB datasets, where we show that even a single network obtained by distillation yields state-of-the-art results.
Scalable Deep Learning on Distributed Infrastructures: Challenges, Techniques and Tools
Mayer, Ruben, Jacobsen, Hans-Arno
Deep Learning (DL) has had an immense success in the recent past, leading to state-of-the-art results in various domains such as image recognition and natural language processing. One of the reasons for this success is the increasing size of DL models and the proliferation of vast amounts of training data being available. To keep on improving the performance of DL, increasing the scalability of DL systems is necessary. In this survey, we perform a broad and thorough investigation on challenges, techniques and tools for scalable DL on distributed infrastructures. This incorporates infrastructures for DL, methods for parallel DL training, multi-tenant resource scheduling and the management of training and model data. Further, we analyze and compare 11 current open-source DL frameworks and tools and investigate which of the techniques are commonly implemented in practice. Finally, we highlight future research trends in DL systems that deserve further research.
Analyzing Knowledge Graph Embedding Methods from a Multi-Embedding Interaction Perspective
Tran, Hung Nghiep, Takasu, Atsuhiro
Knowledge graph is a popular format for representing knowledge, with many applications to semantic search engines, question-answering systems, and recommender systems. Real-world knowledge graphs are usually incomplete, so knowledge graph embedding methods, such as Canonical decomposition/Parallel factorization (CP), DistMult, and ComplEx, have been proposed to address this issue. These methods represent entities and relations as embedding vectors in semantic space and predict the links between them. The embedding vectors themselves contain rich semantic information and can be used in other applications such as data analysis. However, mechanisms in these models and the embedding vectors themselves vary greatly, making it difficult to understand and compare them. Given this lack of understanding, we risk using them ineffectively or incorrectly, particularly for complicated models, such as CP, with two role-based embedding vectors, or the state-of-the-art ComplEx model, with complex-valued embedding vectors. In this paper, we propose a multi-embedding interaction mechanism as a new approach to uniting and generalizing these models. We derive them theoretically via this mechanism and provide empirical analyses and comparisons between them. We also propose a new multi-embedding model based on quaternion algebra and show that it achieves promising results using popular benchmarks.
Atrial Fibrillation Detection Using Deep Features and Convolutional Networks
Ross-Howe, Sara, Tizhoosh, H. R.
Atrial fibrillation is a cardiac arrhythmia that affects an estimated 33.5 million people globally and is the potential cause of 1 in 3 strokes in people over the age of 60. Detection and diagnosis of atrial fibrillation (AFIB) is done noninvasively in the clinical environment through the evaluation of electrocardiograms (ECGs). Early research into automated methods for the detection of AFIB in ECG signals focused on traditional bio-medical signal analysis to extract important features for use in statistical classification models. Artificial intelligence models have more recently been used that employ convolutional and/or recurrent network architectures. In this work, significant time and frequency domain characteristics of the ECG signal are extracted by applying the short-time Fourier trans-form and then visually representing the information in a spectrogram. Two different classification approaches were investigated that utilized deep features in the spectrograms construct-ed from ECG segments. The first approach used a pretrained DenseNet model to extract features that were then classified using Support Vector Machines, and the second approach used the spectrograms as direct input into a convolutional network. Both approaches were evaluated against the MIT-BIH AFIB dataset, where the convolutional network approach achieved a classification accuracy of 93.16%. While these results do not surpass established automated atrial fibrillation detection methods, they are promising and warrant further investigation given they did not require any noise prefiltering, hand-crafted features, nor a reliance on beat detection.
Social Behavioral Phenotyping of Drosophila with a2D-3D Hybrid CNN Framework
Jiang, Ziping, Chazot, Paul L., Celebi, M. Emre, Crookes, Danny, Jiang, Richard
However, such pipelines are not Drosophila Melanogaster, also known as fruit flies, can transferable since they are highly dependent on the tracking exhibit a wide range of complex social behaviors though it system, which is often designed for a particular task with has only 105 neurons. It also has a high frequency of social specific inputs and outputs.
The Landscape of R Packages for Automated Exploratory Data Analysis
Staniak, Mateusz, Biecek, Przemyslaw
The increasing availability of large but noisy data sets with a large number of heterogeneous variables leads to the increasing interest in the automation of common tasks for data analysis. The most time-consuming part of this process is the Exploratory Data Analysis, crucial for better domain understanding, data cleaning, data validation, and feature engineering. There is a growing number of libraries that attempt to automate some of the typical Exploratory Data Analysis tasks to make the search for new insights easier and faster. In this paper, we present a systematic review of existing tools for Automated Exploratory Data Analysis (autoEDA). We explore the features of twelve popular R packages to identify the parts of analysis that can be effectively automated with the current tools and to point out new directions for further autoEDA development.
Stable prediction with radiomics data
Peeters, Carel F. W., Übelhör, Caroline, Mes, Steven W., Martens, Roland, Koopman, Thomas, de Graaf, Pim, van Velden, Floris H. P., Boellaard, Ronald, Castelijns, Jonas A., Beest, Dennis E. te, Heymans, Martijn W., van de Wiel, Mark A.
Motivation: Radiomics refers to the high-throughput mining of quantitative features from radiographic images. It is a promising field in that it may provide a non-invasive solution for screening and classification. Standard machine learning classification and feature selection techniques, however, tend to display inferior performance in terms of (the stability of) predictive performance. This is due to the heavy multicollinearity present in radiomic data. We set out to provide an easy-to-use approach that deals with this problem. Results: We developed a four-step approach that projects the original high-dimensional feature space onto a lower-dimensional latent-feature space, while retaining most of the covariation in the data. It consists of (i) penalized maximum likelihood estimation of a redundancy filtered correlation matrix. The resulting matrix (ii) is the input for a maximum likelihood factor analysis procedure. This two-stage maximum-likelihood approach can be used to (iii) produce a compact set of stable features that (iv) can be directly used in any (regression-based) classifier or predictor. It outperforms other classification (and feature selection) techniques in both external and internal validation settings regarding survival in squamous cell cancers.
Symbolic Regression for Constructing Analytic Models in Reinforcement Learning
Derner, Erik, Kubalík, Jiří, Ancona, Nicola, Babuška, Robert
Reinforcement learning (RL) is a widely used approach for controlling systems with unknown or time-varying dynamics. Even though RL does not require a model of the system, it is known to be faster and safer when using models learned online. We propose to employ symbolic regression (SR) to construct parsimonious process models described by analytic equations for real-time RL control. We have tested our method with two different state-of-the-art SR algorithms which automatically search for equations that fit the measured data. In addition to the standard problem formulation in the state-space domain, we show how the method can also be applied to input-output models of the NARX (nonlinear autoregressive with exogenous input) type. We present the approach on three simulated examples with up to 14-dimensional state space: an inverted pendulum, a mobile robot, and a biped walking robot. A comparison with deep neural networks and local linear regression shows that SR in most cases outperforms these commonly used alternative methods. We demonstrate on a real pendulum system that the analytic model found enables RL to successfully perform the swing-up task, based on a model constructed from only 100 data samples.