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A Spatial-Temporal Graph Based Hybrid Infectious Disease Model with Application to COVID-19

arXiv.org Machine Learning

As the COVID-19 pandemic evolves, reliable prediction plays an important role for policy making. The classical infectious disease model SEIR (susceptible-exposed-infectious-recovered) is a compact yet simplistic temporal model. The data-driven machine learning models such as RNN (recurrent neural networks) can suffer in case of limited time series data such as COVID-19. In this paper, we combine SEIR and RNN on a graph structure to develop a hybrid spatio-temporal model to achieve both accuracy and efficiency in training and forecasting. We introduce two features on the graph structure: node feature (local temporal infection trend) and edge feature (geographic neighbor effect). For node feature, we derive a discrete recursion (called I-equation) from SEIR so that gradient descend method applies readily to its optimization. For edge feature, we design an RNN model to capture the neighboring effect and regularize the landscape of loss function so that local minima are effective and robust for prediction. The resulting hybrid model (called IeRNN) improves the prediction accuracy on state-level COVID-19 new case data from the US, out-performing standard temporal models (RNN, SEIR, and ARIMA) in 1-day and 7-day ahead forecasting. Our model accommodates various degrees of reopening and provides potential outcomes for policymakers.


Model-sharing Games: Analyzing Federated Learning Under Voluntary Participation

arXiv.org Machine Learning

Federated learning is a setting where agents, each with access to their own data source, combine models learned from local data to create a global model. If agents are drawing their data from different distributions, though, federated learning might produce a biased global model that is not optimal for each agent. This means that agents face a fundamental question: should they join the global model or stay with their local model? In this work, we show how this situation can be naturally analyzed through the framework of coalitional game theory. Motivated by these considerations, we propose the following game: there are heterogeneous players with different model parameters governing their data distribution and different amounts of data they have noisily drawn from their own distribution. Each player's goal is to obtain a model with minimal expected mean squared error (MSE) on their own distribution. They have a choice of fitting a model based solely on their own data, or combining their learned parameters with those of some subset of the other players. Combining models reduces the variance component of their error through access to more data, but increases the bias because of the heterogeneity of distributions. In this work, we derive exact expected MSE values for problems in linear regression and mean estimation. We use these values to analyze the resulting game in the framework of hedonic game theory; we study how players might divide into coalitions, where each set of players within a coalition jointly constructs a single model. In a case with arbitrarily many players that each have either a "small" or "large" amount of data, we constructively show that there always exists a stable partition of players into coalitions.


Distribution-Based Invariant Deep Networks for Learning Meta-Features

arXiv.org Machine Learning

Recent advances in deep learning from probability distributions successfully achieve classification or regression from distribution samples, thus invariant under permutation of the samples. The first contribution of the paper is to extend these neural architectures to achieve invariance under permutation of the features, too. The proposed architecture, called Dida, inherits the NN properties of universal approximation, and its robustness w.r.t. Lipschitz-bounded transformations of the input distribution is established. The second contribution is to empirically and comparatively demonstrate the merits of the approach on two tasks defined at the dataset level. On both tasks, Dida learns meta-features supporting the characterization of a (labelled) dataset. The first task consists of predicting whether two dataset patches are extracted from the same initial dataset. The second task consists of predicting whether the learning performance achieved by a hyper-parameter configuration under a fixed algorithm (ranging in k-NN, SVM, logistic regression and linear classifier with SGD) dominates that of another configuration, for a dataset extracted from the OpenML benchmarking suite. On both tasks, Dida outperforms the state of the art: DSS (Maron et al., 2020) and Dataset2Vec (Jomaa et al., 2019) architectures, as well as the models based on the hand-crafted meta-features of the literature.


Pointer Graph Networks

arXiv.org Machine Learning

Graph neural networks (GNNs) are typically applied to static graphs that are assumed to be known upfront. This static input structure is often informed purely by insight of the machine learning practitioner, and might not be optimal for the actual task the GNN is solving. In absence of reliable domain expertise, one might resort to inferring the latent graph structure, which is often difficult due to the vast search space of possible graphs. Here we introduce Pointer Graph Networks (PGNs) which augment sets or graphs with additional inferred edges for improved model generalisation ability. PGNs allow each node to dynamically point to another node, followed by message passing over these pointers. The sparsity of this adaptable graph structure makes learning tractable while still being sufficiently expressive to simulate complex algorithms. Critically, the pointing mechanism is directly supervised to model long-term sequences of operations on classical data structures, incorporating useful structural inductive biases from theoretical computer science. Qualitatively, we demonstrate that PGNs can learn parallelisable variants of pointer-based data structures, namely disjoint set unions and link/cut trees.


Stochastic Variance-Reduced Hamilton Monte Carlo Methods

arXiv.org Machine Learning

We propose a fast stochastic Hamilton Monte Carlo (HMC) method, for sampling from a smooth and strongly log-concave distribution. At the core of our proposed method is a variance reduction technique inspired by the recent advance in stochastic optimization. We show that, to achieve $\epsilon$ accuracy in 2-Wasserstein distance, our algorithm achieves $\tilde O(n+\kappa^{2}d^{1/2}/\epsilon+\kappa^{4/3}d^{1/3}n^{2/3}/\epsilon^{2/3})$ gradient complexity (i.e., number of component gradient evaluations), which outperforms the state-of-the-art HMC and stochastic gradient HMC methods in a wide regime. We also extend our algorithm for sampling from smooth and general log-concave distributions, and prove the corresponding gradient complexity as well. Experiments on both synthetic and real data demonstrate the superior performance of our algorithm.


Graphite: GRAPH-Induced feaTure Extraction for Point Cloud Registration

arXiv.org Artificial Intelligence

3D Point clouds are a rich source of information that enjoy growing popularity in the vision community. However, due to the sparsity of their representation, learning models based on large point clouds is still a challenge. In this work, we introduce Graphite, a GRAPH-Induced feaTure Extraction pipeline, a simple yet powerful feature transform and keypoint detector. Graphite enables intensive down-sampling of point clouds with keypoint detection accompanied by a descriptor. We construct a generic graph-based learning scheme to describe point cloud regions and extract salient points. To this end, we take advantage of 6D pose information and metric learning to learn robust descriptions and keypoints across different scans. We Reformulate the 3D keypoint pipeline with graph neural networks which allow efficient processing of the point set while boosting its descriptive power which ultimately results in more accurate 3D registrations. We demonstrate our lightweight descriptor on common 3D descriptor matching and point cloud registration benchmarks and achieve comparable results with the state of the art. Describing 100 patches of a point cloud and detecting their keypoints takes only ~0.018 seconds with our proposed network.


Federated Unsupervised Representation Learning

arXiv.org Artificial Intelligence

To leverage enormous unlabeled data on distributed edge devices, we formulate a new problem in federated learning called Federated Unsupervised Representation Learning (FURL) to learn a common representation model without supervision while preserving data privacy. FURL poses two new challenges: (1) data distribution shift (Non-IID distribution) among clients would make local models focus on different categories, leading to the inconsistency of representation spaces. (2) without the unified information among clients in FURL, the representations across clients would be misaligned. To address these challenges, we propose Federated Constrastive Averaging with dictionary and alignment (FedCA) algorithm. FedCA is composed of two key modules: (1) dictionary module to aggregate the representations of samples from each client and share with all clients for consistency of representation space and (2) alignment module to align the representation of each client on a base model trained on a public data. We adopt the contrastive loss for local model training. Through extensive experiments with three evaluation protocols in IID and Non-IID settings, we demonstrate that FedCA outperforms all baselines with significant margins.


Feature Importance Ranking for Deep Learning

arXiv.org Artificial Intelligence

Feature importance ranking has become a powerful tool for explainable AI. However, its nature of combinatorial optimization poses a great challenge for deep learning. In this paper, we propose a novel dual-net architecture consisting of operator and selector for discovery of an optimal feature subset of a fixed size and ranking the importance of those features in the optimal subset simultaneously. During learning, the operator is trained for a supervised learning task via optimal feature subset candidates generated by the selector that learns predicting the learning performance of the operator working on different optimal subset candidates. We develop an alternate learning algorithm that trains two nets jointly and incorporates a stochastic local search procedure into learning to address the combinatorial optimization challenge. In deployment, the selector generates an optimal feature subset and ranks feature importance, while the operator makes predictions based on the optimal subset for test data. A thorough evaluation on synthetic, benchmark and real data sets suggests that our approach outperforms several state-of-the-art feature importance ranking and supervised feature selection methods.


Meta-path Free Semi-supervised Learning for Heterogeneous Networks

arXiv.org Artificial Intelligence

Graph neural networks (GNNs) have been widely used in representation learning on graphs and achieved superior performance in tasks such as node classification. However, analyzing heterogeneous graph of different types of nodes and links still brings great challenges for injecting the heterogeneity into a graph neural network. A general remedy is to manually or automatically design meta-paths to transform a heterogeneous graph into a homogeneous graph, but this is suboptimal since the features from the first-order neighbors are not fully leveraged for training and inference. In this paper, we propose simple and effective graph neural networks for heterogeneous graph, excluding the use of meta-paths. Specifically, our models focus on relaxing the heterogeneity stress for model parameters by expanding model capacity of general GNNs in an effective way. Extensive experimental results on six real-world graphs not only show the superior performance of our proposed models over the state-of-the-arts, but also demonstrate the potentially good balance between reducing the heterogeneity stress and increasing the parameter size. Our code is freely available for reproducing our results.


20 Free Online Books to Learn R and Data Science - Python and R Tips

#artificialintelligence

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