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 Statistical Learning


Machine Learning Classification of Alzheimer's Disease Stages Using Cerebrospinal Fluid Biomarkers Alone

arXiv.org Artificial Intelligence

Early diagnosis of Alzheimer's disease is a challenge because the existing methodologies do not identify the patients in their preclinical stage, which can last up to a decade prior to the onset of clinical symptoms. Several research studies demonstrate the potential of cerebrospinal fluid biomarkers, amyloid beta 1-42, T-tau, and P-tau, in early diagnosis of Alzheimer's disease stages. In this work, we used machine learning models to classify different stages of Alzheimer's disease based on the cerebrospinal fluid biomarker levels alone. An electronic health record of patients from the National Alzheimer's Coordinating Centre database was analyzed and the patients were subdivided based on mini-mental state scores and clinical dementia ratings. Statistical and correlation analyses were performed to identify significant differences between the Alzheimer's stages. Afterward, machine learning classifiers including K-Nearest Neighbors, Ensemble Boosted Tree, Ensemble Bagged Tree, Support Vector Machine, Logistic Regression, and Naïve Bayes classifiers were employed to classify the Alzheimer's disease stages. The results demonstrate that Ensemble Boosted Tree (84.4%) and Logistic Regression (73.4%) provide the highest accuracy for binary classification, while Ensemble Bagged Tree (75.4%) demonstrates better accuracy for multiclassification. The findings from this research are expected to help clinicians in making an informed decision regarding the early diagnosis of Alzheimer's from the cerebrospinal fluid biomarkers alone, monitoring of the disease progression, and implementation of appropriate intervention measures.


Downstream Task-Oriented Generative Model Selections on Synthetic Data Training for Fraud Detection Models

arXiv.org Artificial Intelligence

Devising procedures for downstream task-oriented generative model selections is an unresolved problem of practical importance. Existing studies focused on the utility of a single family of generative models. They provided limited insights on how synthetic data practitioners select the best family generative models for synthetic training tasks given a specific combination of machine learning model class and performance metric. In this paper, we approach the downstream task-oriented generative model selections problem in the case of training fraud detection models and investigate the best practice given different combinations of model interpretability and model performance constraints. Our investigation supports that, while both Neural Network(NN)-based and Bayesian Network(BN)-based generative models are both good to complete synthetic training task under loose model interpretability constrain, the BN-based generative models is better than NN-based when synthetic training fraud detection model under strict model interpretability constrain. Our results provides practical guidance for machine learning practitioner who is interested in replacing their training dataset from real to synthetic, and shed lights on more general downstream task-oriented generative model selection problems.


Robust Meta-Model for Predicting the Need for Blood Transfusion in Non-traumatic ICU Patients

arXiv.org Artificial Intelligence

Objective: Blood transfusions, crucial in managing anemia and coagulopathy in ICU settings, require accurate prediction for effective resource allocation and patient risk assessment. However, existing clinical decision support systems have primarily targeted a particular patient demographic with unique medical conditions and focused on a single type of blood transfusion. This study aims to develop an advanced machine learning-based model to predict the probability of transfusion necessity over the next 24 hours for a diverse range of non-traumatic ICU patients. Methods: We conducted a retrospective cohort study on 72,072 adult non-traumatic ICU patients admitted to a high-volume US metropolitan academic hospital between 2016 and 2020. We developed a meta-learner and various machine learning models to serve as predictors, training them annually with four-year data and evaluating on the fifth, unseen year, iteratively over five years. Results: The experimental results revealed that the meta-model surpasses the other models in different development scenarios. It achieved notable performance metrics, including an Area Under the Receiver Operating Characteristic (AUROC) curve of 0.97, an accuracy rate of 0.93, and an F1-score of 0.89 in the best scenario. Conclusion: This study pioneers the use of machine learning models for predicting blood transfusion needs in a diverse cohort of critically ill patients. The findings of this evaluation confirm that our model not only predicts transfusion requirements effectively but also identifies key biomarkers for making transfusion decisions.


Automated Model Selection for Tabular Data

arXiv.org Artificial Intelligence

Structured data in the form of tabular datasets contain features that are distinct and discrete, with varying individual and relative importances to the target. Combinations of one or more features may be more predictive and meaningful than simple individual feature contributions. R's mixed effect linear models library allows users to provide such interactive feature combinations in the model design. However, given many features and possible interactions to select from, model selection becomes an exponentially difficult task. We aim to automate the model selection process for predictions on tabular datasets incorporating feature interactions while keeping computational costs small. The framework includes two distinct approaches for feature selection: a Priority-based Random Grid Search and a Greedy Search method. The Priority-based approach efficiently explores feature combinations using prior probabilities to guide the search. The Greedy method builds the solution iteratively by adding or removing features based on their impact. Experiments on synthetic demonstrate the ability to effectively capture predictive feature combinations.


Self-supervised learning for skin cancer diagnosis with limited training data

arXiv.org Artificial Intelligence

Cancer diagnosis is a well-studied problem in machine learning since early detection of cancer is often the determining factor in prognosis. Supervised deep learning achieves excellent results in cancer image classification, usually through transfer learning. However, these models require large amounts of labelled data and for several types of cancer, large labelled datasets do not exist. In this paper, we demonstrate that a model pre-trained using a self-supervised learning algorithm known as Barlow Twins can outperform the conventional supervised transfer learning pipeline. We juxtapose two base models: i) pretrained in a supervised fashion on ImageNet; ii) pretrained in a self-supervised fashion on ImageNet. Both are subsequently fine tuned on a small labelled skin lesion dataset and evaluated on a large test set. We achieve a mean test accuracy of 70\% for self-supervised transfer in comparison to 66\% for supervised transfer. Interestingly, boosting performance further is possible by self-supervised pretraining a second time (on unlabelled skin lesion images) before subsequent fine tuning. This hints at an alternative path to collecting more labelled data in settings where this is challenging - namely just collecting more unlabelled images. Our framework is applicable to cancer image classification models in the low-labelled data regime.


Inferring community structure in attributed hypergraphs using stochastic block models

arXiv.org Artificial Intelligence

Hypergraphs are a representation of complex systems involving interactions among more than two entities and allow to investigation of higher-order structure and dynamics in real-world complex systems. Community structure is a common property observed in empirical networks in various domains. Stochastic block models have been employed to investigate community structure in networks. Node attribute data, often accompanying network data, has been found to potentially enhance the learning of community structure in dyadic networks. In this study, we develop a statistical framework that incorporates node attribute data into the learning of community structure in a hypergraph, employing a stochastic block model. We demonstrate that our model, which we refer to as HyperNEO, enhances the learning of community structure in synthetic and empirical hypergraphs when node attributes are sufficiently associated with the communities. Furthermore, we found that applying a dimensionality reduction method, UMAP, to the learned representations obtained using stochastic block models, including our model, maps nodes into a two-dimensional vector space while largely preserving community structure in empirical hypergraphs. We expect that our framework will broaden the investigation and understanding of higher-order community structure in real-world complex systems.


A Temporal Filter to Extract Doped Conducting Polymer Information Features from an Electronic Nose

arXiv.org Artificial Intelligence

Identifying relevant machine-learning features for multi-sensing platforms is both an applicative limitation to recognize environments and a necessity to interpret the physical relevance of transducers' complementarity in their information processing. Particularly for long acquisitions, feature extraction must be fully automatized without human intervention and resilient to perturbations without increasing significantly the computational cost of a classifier. In this study, we investigate on the relative resistance and current modulation of a 24-dimensional conductimetric electronic nose, which uses the exponential moving average as a floating reference in a low-cost information descriptor for environment recognition. In particular, we identified that depending on the structure of a linear classifier, the 'modema' descriptor is optimized for different material sensing elements' contributions to classify information patterns. The low-pass filtering optimization leads to opposite behaviors between unsupervised and supervised learning: the latter one favors longer integration of the reference, allowing to recognize five different classes over 90%, while the first one prefers using the latest events as its reference to clusterize patterns by environment nature. Its electronic implementation shall greatly diminish the computational requirements of conductimetric electronic noses for on-board environment recognition without human supervision.


Online Boosting Adaptive Learning under Concept Drift for Multistream Classification

arXiv.org Artificial Intelligence

Multistream classification poses significant challenges due to the necessity for rapid adaptation in dynamic streaming processes with concept drift. Despite the growing research outcomes in this area, there has been a notable oversight regarding the temporal dynamic relationships between these streams, leading to the issue of negative transfer arising from irrelevant data. In this paper, we propose a novel Online Boosting Adaptive Learning (OBAL) method that effectively addresses this limitation by adaptively learning the dynamic correlation among different streams. Specifically, OBAL operates in a dual-phase mechanism, in the first of which we design an Adaptive COvariate Shift Adaptation (AdaCOSA) algorithm to construct an initialized ensemble model using archived data from various source streams, thus mitigating the covariate shift while learning the dynamic correlations via an adaptive re-weighting strategy. During the online process, we employ a Gaussian Mixture Model-based weighting mechanism, which is seamlessly integrated with the acquired correlations via AdaCOSA to effectively handle asynchronous drift. This approach significantly improves the predictive performance and stability of the target stream. We conduct comprehensive experiments on several synthetic and real-world data streams, encompassing various drifting scenarios and types. The results clearly demonstrate that OBAL achieves remarkable advancements in addressing multistream classification problems by effectively leveraging positive knowledge derived from multiple sources.


The Decaying Missing-at-Random Framework: Doubly Robust Causal Inference with Partially Labeled Data

arXiv.org Machine Learning

In real-world scenarios, data collection limitations often result in partially labeled datasets, leading to difficulties in drawing reliable causal inferences. Traditional approaches in the semi-supervised (SS) and missing data literature may not adequately handle these complexities, leading to biased estimates. To address these challenges, our paper introduces a novel decaying missing-at-random (decaying MAR) framework. This framework tackles missing outcomes in high-dimensional settings and accounts for selection bias arising from the dependence of labeling probability on covariates. Notably, we relax the need for a positivity condition, commonly required in the missing data literature, and allow uniform decay of labeling propensity scores with sample size, accommodating faster growth of unlabeled data. Our decaying MAR framework enables easy rate double-robust (DR) estimation of average treatment effects, succeeding where other methods fail, even with correctly specified nuisance models. Additionally, it facilitates asymptotic normality under model misspecification. To achieve this, we propose adaptive new targeted bias-reducing nuisance estimators and asymmetric cross-fitting, along with a novel semi-parametric approach that fully leverages large volumes of unlabeled data. Our approach requires weak sparsity conditions. Numerical results confirm our estimators' efficacy and versatility, addressing selection bias and model misspecification.


Global $\mathcal{L}^2$ minimization at uniform exponential rate via geometrically adapted gradient descent in Deep Learning

arXiv.org Machine Learning

We consider the gradient descent flow widely used for the minimization of the $\mathcal{L}^2$ cost function in Deep Learning networks, and introduce two modified versions; one adapted for the overparametrized setting, and the other for the underparametrized setting. Both have a clear and natural invariant geometric meaning, taking into account the pullback vector bundle structure in the overparametrized, and the pushforward vector bundle structure in the underparametrized setting. In the overparametrized case, we prove that, provided that a rank condition holds, all orbits of the modified gradient descent drive the $\mathcal{L}^2$ cost to its global minimum at a uniform exponential convergence rate; one thereby obtains an a priori stopping time for any prescribed proximity to the global minimum. We point out relations of the latter to sub-Riemannian geometry.