The sparse inverse covariance estimation problem arises in many statistical applications in machine learning and signal processing. In this problem, the inverse of a covariance matrix of a multivariate normal distribution is estimated, assuming that it is sparse.

We develop a model by choosing the maximum entropy distribution from the set of models satisfying certain smoothness and independence criteria; we show that inference on this model generalizes local kernel estimation to the context of Bayesian inference on stochastic processes. Our model enables Bayesian inference in contexts when standard techniques like Gaussian process inference are too expensive to apply. Exact inference on our model is possible for any likelihood function from the exponential family. Inference is then highly efficient, requiring only O (log N) time and O (N) space at run time. We demonstrate our algorithm on several problems and show quantifiable improvement in both speed and performance relative to models based on the Gaussian process.

Group LASSO is widely used to enforce the structural sparsity, which achieves the sparsity at the inter-group level. In this paper, we propose a new formulation called "exclusive group LASSO", which brings out sparsity at intra-group level in the context of feature selection. The proposed exclusive group LASSO is applicable on any feature structures, regardless of their overlapping or non-overlapping structures. We provide analysis on the properties of exclusive group LASSO, and propose an effective iteratively re-weighted algorithm to solve the corresponding optimization problem with rigorous convergence analysis. We show applications of exclusive group LASSO for uncorrelated feature selection. Extensive experiments on both synthetic and real-world datasets validate the proposed method.

Supervised topic models simultaneously model the latent topic structure of large collections of documents and a response variable associated with each document. Existing inference methods are based on either variational approximation or Monte Carlo sampling. This paper presents a novel spectral decomposition algorithm to recover the parameters of supervised latent Dirichlet allocation (sLDA) models. The Spectral-sLDA algorithm is provably correct and computationally efficient. We prove a sample complexity bound and subsequently derive a sufficient condition for the identifiability of sLDA. Thorough experiments on a diverse range of synthetic and real-world datasets verify the theory and demonstrate the practical effectiveness of the algorithm.

We consider the problem of minimizing block-separable (non-smooth) convex functions subject to linear constraints. While the Alternating Direction Method of Multipliers (ADMM) for two-block linear constraints has been intensively studied both theoretically and empirically, in spite of some preliminary work, effective generalizations of ADMM to multiple blocks is still unclear. In this paper, we propose a parallel randomized block coordinate method named Parallel Direction Method of Multipliers (PDMM) to solve optimization problems with multi-block linear constraints. At each iteration, PDMM randomly updates some blocks in parallel, behaving like parallel randomized block coordinate descent. We establish the global convergence and the iteration complexity for PDMM with constant step size. We also show that PDMM can do randomized block coordinate descent on overlapping blocks. Experimental results show that PDMM performs better than state-of-the-arts methods in two applications, robust principal component analysis and overlapping group lasso.

Learning and memory in the brain are implemented by complex, time-varying changes in neural circuitry. The computational rules according to which synaptic weights change over time are the subject of much research, and are not precisely understood. Until recently, limitations in experimental methods have made it challenging to test hypotheses about synaptic plasticity on a large scale. However, as such data become available and these barriers are lifted, it becomes necessary to develop analysis techniques to validate plasticity models. Here, we present a highly extensible framework for modeling arbitrary synaptic plasticity rules on spike train data in populations of interconnected neurons. We treat synaptic weights as a (potentially nonlinear) dynamical system embedded in a fully-Bayesian generalized linear model (GLM). In addition, we provide an algorithm for inferring synaptic weight trajectories alongside the parameters of the GLM and of the learning rules. Using this method, we perform model comparison of two proposed variants of the well-known spike-timing-dependent plasticity (STDP) rule, where nonlinear effects play a substantial role. On synthetic data generated from the biophysical simulator NEURON, we show that we can recover the weight trajectories, the pattern of connectivity, and the underlying learning rules.

We propose RoBiRank, a ranking algorithm that is motivated by observing a close connection between evaluation metrics for learning to rank and loss functions for robust classification. It shows competitive performance on standard benchmark datasets against a number of other representative algorithms in the literature. We also discuss extensions of RoBiRank to large scale problems where explicit feature vectors and scores are not given. We show that RoBiRank can be efficiently parallelized across a large number of machines; for a task that requires 386, 133 49, 824, 519 pairwise interactions between items to be ranked, RoBi-Rank finds solutions that are of dramatically higher quality than that can be found by a state-of-the-art competitor algorithm, given the same amount of wall-clock time for computation.

Modeling data as being sampled from a union of independent subspaces has been widely applied to a number of real world applications. However, dimensionality reduction approaches that theoretically preserve this independence assumption have not been well studied. Our key contribution is to show that 2K projection vectors are sufficient for the independence preservation of any K class data sampled from a union of independent subspaces. It is this non-trivial observation that we use for designing our dimensionality reduction technique. In this paper, we propose a novel dimensionality reduction algorithm that theoretically preserves this structure for a given dataset. We support our theoretical analysis with empirical results on both synthetic and real world data achieving state-of-the-art results compared to popular dimensionality reduction techniques.

Computing the k dominant eigenvalues and eigenvectors of massive graphs is a key operation in numerous machine learning applications; however, popular solvers suffer from slow convergence, especially when k is reasonably large. In this paper, we propose and analyze a novel multi-scale spectral decomposition method (MSEIGS), which first clusters the graph into smaller clusters whose spectral decomposition can be computed efficiently and independently. We show theoretically as well as empirically that the union of all cluster's subspaces has significant overlap with the dominant subspace of the original graph, provided that the graph is clustered appropriately. Thus, eigenvectors of the clusters serve as good initializations to a block Lanczos algorithm that is used to compute spectral decomposition of the original graph. We further use hierarchical clustering to speed up the computation and adopt a fast early termination strategy to compute quality approximations. Our method outperforms widely used solvers in terms of convergence speed and approximation quality. Furthermore, our method is naturally parallelizable and exhibits significant speedups in shared-memory parallel settings. For example, on a graph with more than 82 million nodes and 3.6 billion edges, MSEIGS takes less than 3 hours on a single-core machine while Randomized SVD takes more than 6 hours, to obtain a similar approximation of the top-50 eigenvectors. Using 16 cores, we can reduce this time to less than 40 minutes.

In many situations we have some measurement of confidence on "positiveness" for a binary label. The "positiveness" is a continuous value whose range is a bounded interval.