Statistical Learning
Adaptive Multiscale Retinal Diagnosis: A Hybrid Trio-Model Approach for Comprehensive Fundus Multi-Disease Detection Leveraging Transfer Learning and Siamese Networks
WHO has declared that more than 2.2 billion people worldwide are suffering from visual disorders, such as media haze, glaucoma, and drusen. At least 1 billion of these cases could have been either prevented or successfully treated, yet they remain unaddressed due to poverty, a lack of specialists, inaccurate ocular fundus diagnoses by ophthalmologists, or the presence of a rare disease. To address this, the research has developed the Hybrid Trio-Network Model Algorithm for accurately diagnosing 12 distinct common and rare eye diseases. This algorithm utilized the RFMiD dataset of 3,200 fundus images and the Binary Relevance Method to detect diseases separately, ensuring expandability and avoiding incorrect correlations. Each detector, incorporating finely tuned hyperparameters to optimize performance, consisted of three feature components: A classical transfer learning CNN model, a two-stage CNN model, and a Siamese Network. The diagnosis was made using features extracted through this Trio-Model with Ensembled Machine Learning algorithms. The proposed model achieved an average accuracy of 97% and an AUC score of 0.96. Compared to past benchmark studies, an increase of over 10% in the F1-score was observed for most diseases. Furthermore, using the Siamese Network, the model successfully made predictions in diseases like optic disc pallor, which past studies failed to predict due to low confidence. This diagnostic tool presents a stable, adaptive, cost-effective, efficient, accessible, and fast solution for globalizing early detection of both common and rare diseases.
Smoke and Mirrors in Causal Downstream Tasks
Cadei, Riccardo, Lindorfer, Lukas, Cremer, Sylvia, Schmid, Cordelia, Locatello, Francesco
Machine Learning and AI have the potential to transform data-driven scientific discovery, enabling accurate predictions for several scientific phenomena. As many scientific questions are inherently causal, this paper looks at the causal inference task of treatment effect estimation, where we assume binary effects that are recorded as high-dimensional images in a Randomized Controlled Trial (RCT). Despite being the simplest possible setting and a perfect fit for deep learning, we theoretically find that many common choices in the literature may lead to biased estimates. To test the practical impact of these considerations, we recorded the first real-world benchmark for causal inference downstream tasks on high-dimensional observations as an RCT studying how garden ants (Lasius neglectus) respond to microparticles applied onto their colony members by hygienic grooming. Comparing 6 480 models fine-tuned from state-of-the-art visual backbones, we find that the sampling and modeling choices significantly affect the accuracy of the causal estimate, and that classification accuracy is not a proxy thereof. We further validated the analysis, repeating it on a synthetically generated visual data set controlling the causal model. Our results suggest that future benchmarks should carefully consider real downstream scientific questions, especially causal ones. Further, we highlight guidelines for representation learning methods to help answer causal questions in the sciences. All code and data will be released.
An Introduction to Vision-Language Modeling
Bordes, Florian, Pang, Richard Yuanzhe, Ajay, Anurag, Li, Alexander C., Bardes, Adrien, Petryk, Suzanne, Maรฑas, Oscar, Lin, Zhiqiu, Mahmoud, Anas, Jayaraman, Bargav, Ibrahim, Mark, Hall, Melissa, Xiong, Yunyang, Lebensold, Jonathan, Ross, Candace, Jayakumar, Srihari, Guo, Chuan, Bouchacourt, Diane, Al-Tahan, Haider, Padthe, Karthik, Sharma, Vasu, Xu, Hu, Tan, Xiaoqing Ellen, Richards, Megan, Lavoie, Samuel, Astolfi, Pietro, Hemmat, Reyhane Askari, Chen, Jun, Tirumala, Kushal, Assouel, Rim, Moayeri, Mazda, Talattof, Arjang, Chaudhuri, Kamalika, Liu, Zechun, Chen, Xilun, Garrido, Quentin, Ullrich, Karen, Agrawal, Aishwarya, Saenko, Kate, Celikyilmaz, Asli, Chandra, Vikas
Following the recent popularity of Large Language Models (LLMs), several attempts have been made to extend them to the visual domain. From having a visual assistant that could guide us through unfamiliar environments to generative models that produce images using only a high-level text description, the vision-language model (VLM) applications will significantly impact our relationship with technology. However, there are many challenges that need to be addressed to improve the reliability of those models. While language is discrete, vision evolves in a much higher dimensional space in which concepts cannot always be easily discretized. To better understand the mechanics behind mapping vision to language, we present this introduction to VLMs which we hope will help anyone who would like to enter the field. First, we introduce what VLMs are, how they work, and how to train them. Then, we present and discuss approaches to evaluate VLMs. Although this work primarily focuses on mapping images to language, we also discuss extending VLMs to videos.
Synergy and Diversity in CLIP: Enhancing Performance Through Adaptive Backbone Ensembling
Rodriguez-Opazo, Cristian, Abbasnejad, Ehsan, Teney, Damien, Marrese-Taylor, Edison, Damirchi, Hamed, Hengel, Anton van den
Contrastive Language-Image Pretraining (CLIP) stands out as a prominent method for image representation learning. Various architectures, from vision transformers (ViTs) to convolutional networks (ResNets) have been trained with CLIP to serve as general solutions to diverse vision tasks. This paper explores the differences across various CLIP-trained vision backbones. Despite using the same data and training objective, we find that these architectures have notably different representations, different classification performance across datasets, and different robustness properties to certain types of image perturbations. Our findings indicate a remarkable possible synergy across backbones by leveraging their respective strengths. In principle, classification accuracy could be improved by over 40 percentage with an informed selection of the optimal backbone per test example. Using this insight, we develop a straightforward yet powerful approach to adaptively ensemble multiple backbones. The approach uses as few as one labeled example per class to tune the adaptive combination of backbones. On a large collection of datasets, the method achieves a remarkable increase in accuracy of up to 39.1% over the best single backbone, well beyond traditional ensembles.
What's the Opposite of a Face? Finding Shared Decodable Concepts and their Negations in the Brain
Efird, Cory, Murphy, Alex, Zylberberg, Joel, Fyshe, Alona
Prior work has offered evidence for functional localization in the brain; different anatomical regions preferentially activate for certain types of visual input. For example, the fusiform face area preferentially activates for visual stimuli that include a face. However, the spectrum of visual semantics is extensive, and only a few semantically-tuned patches of cortex have so far been identified in the human brain. Using a multimodal (natural language and image) neural network architecture (CLIP) we train a highly accurate contrastive model that maps brain responses during naturalistic image viewing to CLIP embeddings. We then use a novel adaptation of the DBSCAN clustering algorithm to cluster the parameters of these participant-specific contrastive models. This reveals what we call Shared Decodable Concepts (SDCs): clusters in CLIP space that are decodable from common sets of voxels across multiple participants. Examining the images most and least associated with each SDC cluster gives us additional insight into the semantic properties of each SDC. We note SDCs for previously reported visual features (e.g. orientation tuning in early visual cortex) as well as visual semantic concepts such as faces, places and bodies. In cases where our method finds multiple clusters for a visuo-semantic concept, the least associated images allow us to dissociate between confounding factors. For example, we discovered two clusters of food images, one driven by color, the other by shape. We also uncover previously unreported areas such as regions of extrastriate body area (EBA) tuned for legs/hands and sensitivity to numerosity in right intraparietal sulcus, and more. Thus, our contrastive-learning methodology better characterizes new and existing visuo-semantic representations in the brain by leveraging multimodal neural network representations and a novel adaptation of clustering algorithms.
Assessing the significance of longitudinal data in Alzheimer's Disease forecasting
Karaman, Batuhan K., Sabuncu, Mert R.
In this study, we employ a transformer encoder model to characterize the significance of longitudinal patient data for forecasting the progression of Alzheimer's Disease (AD). Our model, Longitudinal Forecasting Model for Alzheimer's Disease (LongForMAD), harnesses the comprehensive temporal information embedded in sequences of patient visits that incorporate multimodal data, providing a deeper understanding of disease progression than can be drawn from single-visit data alone. We present an empirical analysis across two patient groups--Cognitively Normal (CN) and Mild Cognitive Impairment (MCI)--over a span of five follow-up years. Our findings reveal that models incorporating more extended patient histories can outperform those relying solely on present information, suggesting a deeper historical context is critical in enhancing predictive accuracy for future AD progression. Our results support the incorporation of longitudinal data in clinical settings to enhance the early detection and monitoring of AD.
Unsupervised Generative Feature Transformation via Graph Contrastive Pre-training and Multi-objective Fine-tuning
Ying, Wangyang, Wang, Dongjie, Hu, Xuanming, Zhou, Yuanchun, Aggarwal, Charu C., Fu, Yanjie
Feature transformation is to derive a new feature set from original features to augment the AI power of data. In many science domains such as material performance screening, while feature transformation can model material formula interactions and compositions and discover performance drivers, supervised labels are collected from expensive and lengthy experiments. This issue motivates an Unsupervised Feature Transformation Learning (UFTL) problem. Prior literature, such as manual transformation, supervised feedback guided search, and PCA, either relies on domain knowledge or expensive supervised feedback, or suffers from large search space, or overlooks non-linear feature-feature interactions. UFTL imposes a major challenge on existing methods: how to design a new unsupervised paradigm that captures complex feature interactions and avoids large search space? To fill this gap, we connect graph, contrastive, and generative learning to develop a measurement-pretrain-finetune paradigm for UFTL. For unsupervised feature set utility measurement, we propose a feature value consistency preservation perspective and develop a mean discounted cumulative gain like unsupervised metric to evaluate feature set utility. For unsupervised feature set representation pretraining, we regard a feature set as a feature-feature interaction graph, and develop an unsupervised graph contrastive learning encoder to embed feature sets into vectors. For generative transformation finetuning, we regard a feature set as a feature cross sequence and feature transformation as sequential generation. We develop a deep generative feature transformation model that coordinates the pretrained feature set encoder and the gradient information extracted from a feature set utility evaluator to optimize a transformed feature generator.
Double Variance Reduction: A Smoothing Trick for Composite Optimization Problems without First-Order Gradient
Di, Hao, Ye, Haishan, Zhang, Yueling, Chang, Xiangyu, Dai, Guang, Tsang, Ivor W.
Variance reduction techniques are designed to decrease the sampling variance, thereby accelerating convergence rates of first-order (FO) and zeroth-order (ZO) optimization methods. However, in composite optimization problems, ZO methods encounter an additional variance called the coordinate-wise variance, which stems from the random gradient estimation. To reduce this variance, prior works require estimating all partial derivatives, essentially approximating FO information. This approach demands O(d) function evaluations (d is the dimension size), which incurs substantial computational costs and is prohibitive in high-dimensional scenarios. This paper proposes the Zeroth-order Proximal Double Variance Reduction (ZPDVR) method, which utilizes the averaging trick to reduce both sampling and coordinate-wise variances. Compared to prior methods, ZPDVR relies solely on random gradient estimates, calls the stochastic zeroth-order oracle (SZO) in expectation $\mathcal{O}(1)$ times per iteration, and achieves the optimal $\mathcal{O}(d(n + \kappa)\log (\frac{1}{\epsilon}))$ SZO query complexity in the strongly convex and smooth setting, where $\kappa$ represents the condition number and $\epsilon$ is the desired accuracy. Empirical results validate ZPDVR's linear convergence and demonstrate its superior performance over other related methods.
Matrix Low-Rank Approximation For Policy Gradient Methods
Rozada, Sergio, Marques, Antonio G.
Estimating a policy that maps states to actions is a central problem in reinforcement learning. Traditionally, policies are inferred from the so called value functions (VFs), but exact VF computation suffers from the curse of dimensionality. Policy gradient (PG) methods bypass this by learning directly a parametric stochastic policy. Typically, the parameters of the policy are estimated using neural networks (NNs) tuned via stochastic gradient descent. However, finding adequate NN architectures can be challenging, and convergence issues are common as well. In this paper, we put forth low-rank matrix-based models to estimate efficiently the parameters of PG algorithms. We collect the parameters of the stochastic policy into a matrix, and then, we leverage matrix-completion techniques to promote (enforce) low rank. We demonstrate via numerical studies how low-rank matrix-based policy models reduce the computational and sample complexities relative to NN models, while achieving a similar aggregated reward.
Learning Social Welfare Functions
Pardeshi, Kanad Shrikar, Shapira, Itai, Procaccia, Ariel D., Singh, Aarti
Is it possible to understand or imitate a policy maker's rationale by looking at past decisions they made? We formalize this question as the problem of learning social welfare functions belonging to the well-studied family of power mean functions. We focus on two learning tasks; in the first, the input is vectors of utilities of an action (decision or policy) for individuals in a group and their associated social welfare as judged by a policy maker, whereas in the second, the input is pairwise comparisons between the welfares associated with a given pair of utility vectors. We show that power mean functions are learnable with polynomial sample complexity in both cases, even if the comparisons are social welfare information is noisy. Finally, we design practical algorithms for these tasks and evaluate their performance.