Hierarchical clustering is a data analysis method that has been used for decades. Despite its widespread use, the method has an underdeveloped analytical foundation. Having a well understood foundation would both support the currently used methods and help guide future improvements. The goal of this paper is to give an analytic framework to better understand observations seen in practice. This paper considers the dual of a problem framework for hierarchical clustering introduced by Dasgupta.

The Euclidean k-means problem is arguably the most widely-studied clustering problem in machine learning. While the k-means objective is NP-hard in the worst-case, practitioners have enjoyed remarkable success in applying heuristics like Lloyd's algorithm for this problem. To address this disconnect, we study the following question: what properties of real-world instances will enable us to design efficient algorithms and prove guarantees for finding the optimal clustering? We consider a natural notion called additive perturbation stability that we believe captures many practical instances of Euclidean k-means clustering. Stable instances have unique optimal k-means solutions that does not change even when each point is perturbed a little (in Euclidean distance). This captures the property that k-means optimal solution should be tolerant to measurement errors and uncertainty in the points. We design efficient algorithms that provably recover the optimal clustering for instances that are additive perturbation stable. When the instance has some additional separation, we can design a simple, efficient algorithm with provable guarantees that is also robust to outliers. We also complement these results by studying the amount of stability in real datasets, and demonstrating that our algorithm performs well on these benchmark datasets.

A powerful approach for understanding neural population dynamics is to extract low-dimensional trajectories from population recordings using dimensionality reduction methods. Current approaches for dimensionality reduction on neural data are limited to single population recordings, and can not identify dynamics embedded across multiple measurements. We propose an approach for extracting low-dimensional dynamics from multiple, sequential recordings. Our algorithm scales to data comprising millions of observed dimensions, making it possible to access dynamics distributed across large populations or multiple brain areas. Building on subspace-identification approaches for dynamical systems, we perform parameter estimation by minimizing a moment-matching objective using a scalable stochastic gradient descent algorithm: The model is optimized to predict temporal covariations across neurons and across time. We show how this approach naturally handles missing data and multiple partial recordings, and can identify dynamics and predict correlations even in the presence of severe subsampling and small overlap between recordings. We demonstrate the effectiveness of the approach both on simulated data and a whole-brain larval zebrafish imaging dataset.

This article considers algorithmic and statistical aspects of linear regression when the correspondence between the covariates and the responses is unknown. First, a fully polynomial-time approximation scheme is given for the natural least squares optimization problem in any constant dimension. Next, in an average-case and noise-free setting where the responses exactly correspond to a linear function of i.i.d.

Stochastic optimization of continuous objectives is at the heart of modern machine learning. However, many important problems are of discrete nature and often involve submodular objectives. We seek to unleash the power of stochastic continuous optimization, namely stochastic gradient descent and its variants, to such discrete problems. We first introduce the problem of stochastic submodular optimization, where one needs to optimize a submodular objective which is given as an expectation. Our model captures situations where the discrete objective arises as an empirical risk (e.g., in the case of exemplar-based clustering), or is given as an explicit stochastic model (e.g., in the case of influence maximization in social networks). By exploiting that common extensions act linearly on the class of submodular functions, we employ projected stochastic gradient ascent and its variants in the continuous domain, and perform rounding to obtain discrete solutions. We focus on the rich and widely used family of weighted coverage functions. We show that our approach yields solutions that are guaranteed to match the optimal approximation guarantees, while reducing the computational cost by several orders of magnitude, as we demonstrate empirically.

Linear regression models have been successfully used to function estimation and model selection in high-dimensional data analysis. However, most existing methods are built on least squares with the mean square error (MSE) criterion, which are sensitive to outliers and their performance may be degraded for heavy-tailed noise. In this paper, we go beyond this criterion by investigating the regularized modal regression from a statistical learning viewpoint. A new regularized modal regression model is proposed for estimation and variable selection, which is robust to outliers, heavy-tailed noise, and skewed noise. On the theoretical side, we establish the approximation estimate for learning the conditional mode function, the sparsity analysis for variable selection, and the robustness characterization. On the application side, we applied our model to successfully improve the cognitive impairment prediction using the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort data.

We study the estimation of the latent variable Gaussian graphical model (LVGGM), where the precision matrix is the superposition of a sparse matrix and a low-rank matrix. In order to speed up the estimation of the sparse plus low-rank components, we propose a sparsity constrained maximum likelihood estimator based on matrix factorization and an efficient alternating gradient descent algorithm with hard thresholding to solve it. Our algorithm is orders of magnitude faster than the convex relaxation based methods for LVGGM. In addition, we prove that our algorithm is guaranteed to linearly converge to the unknown sparse and low-rank components up to the optimal statistical precision. Experiments on both synthetic and genomic data demonstrate the superiority of our algorithm over the state-of-the-art algorithms and corroborate our theory.

In recent years, stochastic gradient descent (SGD) based techniques has become the standard tools for training neural networks. However, formal theoretical understanding of why SGD can train neural networks in practice is largely missing. In this paper, we make progress on understanding this mystery by providing a convergence analysis for SGD on a rich subset of two-layer feedforward networks with ReLU activations. This subset is characterized by a special structure called identity mapping. We prove that, if input follows from Gaussian distribution, with standard $O(1/\sqrt{d})$ initialization of the weights, SGD converges to the global minimum in polynomial number of steps.

In this paper, we extend the geometric descent method recently proposed by Bubeck, Lee and Singh to tackle nonsmooth and strongly convex composite problems. We prove that our proposed algorithm, dubbed geometric proximal gradient method (GeoPG), converges with a linear rate $(1-1/\sqrt{\kappa})$ and thus achieves the optimal rate among first-order methods, where $\kappa$ is the condition number of the problem. Numerical results on linear regression and logistic regression with elastic net regularization show that GeoPG compares favorably with Nesterov's accelerated proximal gradient method, especially when the problem is ill-conditioned.

We show experimentally that the algorithm CLARANS of Ng and Han (1994) finds better K-medoids solutions than the Voronoi iteration algorithm of Hastie et al. (2001). This finding, along with the similarity between the Voronoi iteration algorithm and Lloyd's K-means algorithm, motivates us to use CLARANS as a K-means initializer. We show that CLARANS outperforms other algorithms on 23/23 datasets with a mean decrease over k-means++ of 30% for initialization mean squared error (MSE) and 3% for final MSE. We introduce algorithmic improvements to CLARANS which improve its complexity and runtime, making it a viable initialization scheme for large datasets.