Statistical Learning
A computational framework for longitudinal medication adherence prediction in breast cancer survivors: A social cognitive theory based approach
Kaur, Navreet, Gonzales, Manuel IV, Alcaraz, Cristian Garcia, Gong, Jiaqi, Wells, Kristen J., Barnes, Laura E.
Non-adherence to medications is a critical concern since nearly half of patients with chronic illnesses do not follow their prescribed medication regimens, leading to increased mortality, costs, and preventable human distress. Amongst stage 0-3 breast cancer survivors, adherence to long-term adjuvant endocrine therapy (i.e., Tamoxifen and aromatase inhibitors) is associated with a significant increase in recurrence-free survival. This work aims to develop multi-scale models of medication adherence to understand the significance of different factors influencing adherence across varying time frames. We introduce a computational framework guided by Social Cognitive Theory for multi-scale (daily and weekly) modeling of longitudinal medication adherence. Our models employ both dynamic medication-taking patterns in the recent past (dynamic factors) as well as less frequently changing factors (static factors) for adherence prediction. Additionally, we assess the significance of various factors in influencing adherence behavior across different time scales. Our models outperform traditional machine learning counterparts in both daily and weekly tasks in terms of both accuracy and specificity. Daily models achieved an accuracy of 87.25%, and weekly models, an accuracy of 76.04%. Notably, dynamic past medication-taking patterns prove most valuable for predicting daily adherence, while a combination of dynamic and static factors is significant for macro-level weekly adherence patterns.
Machine learning enhanced atom probe tomography analysis: a snapshot review
Li, Yue, Wei, Ye, Saxena, Alaukik, Kรผhbach, Markus, Freysoldt, Christoph, Gault, Baptiste
Atom probe tomography (APT) is a burgeoning characterization technique that provides compositional mapping of materials in three-dimensions at near-atomic scale. Since its significant expansion in the past 30 years, we estimate that one million APT datasets have been collected, each containing millions to billions of individual ions. Their analysis and the extraction of microstructural information has largely relied upon individual users whose varied level of expertise causes clear and documented bias. Current practices hinder efficient data processing, and make challenging standardization and the deployment of data analysis workflows that would be compliant with FAIR data principles. Over the past decade, building upon the long-standing expertise of the APT community in the development of advanced data processing or data mining techniques, there has been a surge of novel machine learning (ML) approaches aiming for user-independence, and that are efficient, reproducible, and robust from a statistics perspective. Here, we provide a snapshot review of this rapidly evolving field. We begin with a brief introduction to APT and the nature of the APT data. This is followed by an overview of relevant ML algorithms and a comprehensive review of their applications to APT. We also discuss how ML can enable discoveries beyond human capability, offering new insights into the mechanisms within materials. Finally, we provide guidance for future directions in this domain.
Visual Prompting for One-shot Controllable Video Editing without Inversion
Zhang, Zhengbo, Zhou, Yuxi, Peng, Duo, Lim, Joo-Hwee, Tu, Zhigang, Soh, De Wen, Foo, Lin Geng
One-shot controllable video editing (OCVE) is an important yet challenging task, aiming to propagate user edits that are made -- using any image editing tool -- on the first frame of a video to all subsequent frames, while ensuring content consistency between edited frames and source frames. To achieve this, prior methods employ DDIM inversion to transform source frames into latent noise, which is then fed into a pre-trained diffusion model, conditioned on the user-edited first frame, to generate the edited video. However, the DDIM inversion process accumulates errors, which hinder the latent noise from accurately reconstructing the source frames, ultimately compromising content consistency in the generated edited frames. To overcome it, our method eliminates the need for DDIM inversion by performing OCVE through a novel perspective based on visual prompting. Furthermore, inspired by consistency models that can perform multi-step consistency sampling to generate a sequence of content-consistent images, we propose a content consistency sampling (CCS) to ensure content consistency between the generated edited frames and the source frames. Moreover, we introduce a temporal-content consistency sampling (TCS) based on Stein Variational Gradient Descent to ensure temporal consistency across the edited frames. Extensive experiments validate the effectiveness of our approach.
CLIP-Powered Domain Generalization and Domain Adaptation: A Comprehensive Survey
Li, Jindong, Li, Yongguang, Fu, Yali, Liu, Jiahong, Liu, Yixin, Yang, Menglin, King, Irwin
As machine learning evolves, domain generalization (DG) and domain adaptation (DA) have become crucial for enhancing model robustness across diverse environments. Contrastive Language-Image Pretraining (CLIP) plays a significant role in these tasks, offering powerful zero-shot capabilities that allow models to perform effectively in unseen domains. However, there remains a significant gap in the literature, as no comprehensive survey currently exists that systematically explores the applications of CLIP in DG and DA, highlighting the necessity for this review. This survey presents a comprehensive review of CLIP's applications in DG and DA. In DG, we categorize methods into optimizing prompt learning for task alignment and leveraging CLIP as a backbone for effective feature extraction, both enhancing model adaptability. For DA, we examine both source-available methods utilizing labeled source data and source-free approaches primarily based on target domain data, emphasizing knowledge transfer mechanisms and strategies for improved performance across diverse contexts. Key challenges, including overfitting, domain diversity, and computational efficiency, are addressed, alongside future research opportunities to advance robustness and efficiency in practical applications. By synthesizing existing literature and pinpointing critical gaps, this survey provides valuable insights for researchers and practitioners, proposing directions for effectively leveraging CLIP to enhance methodologies in domain generalization and adaptation. Ultimately, this work aims to foster innovation and collaboration in the quest for more resilient machine learning models that can perform reliably across diverse real-world scenarios. A more up-to-date version of the papers is maintained at: https://github.com/jindongli-Ai/Survey_on_CLIP-Powered_Domain_Generalization_and_Adaptation.
Rethinking Traffic Flow Forecasting: From Transition to Generatation
Shijiao, Li, Zhipeng, Ma, Huajun, He, Haiyue, Chen
Traffic flow prediction plays an important role in Intelligent Transportation Systems in traffic management and urban planning. There have been extensive successful works in this area. However, these approaches focus only on modelling the flow transition and ignore the flow generation process, which manifests itself in two ways: (i) The models are based on Markovian assumptions, ignoring the multi-periodicity of the flow generation in nodes. (ii) The same structure is designed to encode both the transition and generation processes, ignoring the differences between them. To address these problems, we propose an Effective Multi-Branch Similarity Transformer for Traffic Flow Prediction, namely EMBSFormer. Through data analysis, we find that the factors affecting traffic flow include node-level traffic generation and graph-level traffic transition, which describe the multi-periodicity and interaction pattern of nodes, respectively. Specifically, to capture traffic generation patterns, we propose a similarity analysis module that supports multi-branch encoding to dynamically expand significant cycles. For traffic transition, we employ a temporal and spatial self-attention mechanism to maintain global node interactions, and use GNN and time conv to model local node interactions, respectively. Model performance is evaluated on three real-world datasets on both long-term and short-term prediction tasks. Experimental results show that EMBSFormer outperforms baselines on both tasks. Moreover, compared to models based on flow transition modelling (e.g. GMAN, 513k), the variant of EMBSFormer(93K) only uses 18\% of the parameters, achieving the same performance.
Bayesian Principles Improve Prompt Learning In Vision-Language Models
Kim, Mingyu, Ko, Jongwoo, Park, Mijung
Prompt learning is a popular fine-tuning method for vision-language models due to its efficiency. It requires a small number of additional learnable parameters while significantly enhancing performance on target tasks. However, most existing methods suffer from overfitting to fine-tuning data, yielding poor generalizability. To address this, we propose a new training objective function based on a Bayesian learning principle to balance adaptability and generalizability. We derive a prior over the logits, where the mean function is parameterized by the pre-trained model, while the posterior corresponds to the fine-tuned model. This objective establishes a balance by allowing the fine-tuned model to adapt to downstream tasks while remaining close to the pre-trained model.
PEFT A2Z: Parameter-Efficient Fine-Tuning Survey for Large Language and Vision Models
Prottasha, Nusrat Jahan, Chowdhury, Upama Roy, Mohanto, Shetu, Nuzhat, Tasfia, Sami, Abdullah As, Ali, Md Shamol, Sobuj, Md Shohanur Islam, Raman, Hafijur, Kowsher, Md, Garibay, Ozlem Ozmen
Large models such as Large Language Models (LLMs) and Vision Language Models (VLMs) have transformed artificial intelligence, powering applications in natural language processing, computer vision, and multimodal learning. However, fully fine-tuning these models remains expensive, requiring extensive computational resources, memory, and task-specific data. Parameter-Efficient Fine-Tuning (PEFT) has emerged as a promising solution that allows adapting large models to downstream tasks by updating only a small portion of parameters. This survey presents a comprehensive overview of PEFT techniques, focusing on their motivations, design principles, and effectiveness. We begin by analyzing the resource and accessibility challenges posed by traditional fine-tuning and highlight key issues, such as overfitting, catastrophic forgetting, and parameter inefficiency. We then introduce a structured taxonomy of PEFT methods -- grouped into additive, selective, reparameterized, hybrid, and unified frameworks -- and systematically compare their mechanisms and trade-offs. Beyond taxonomy, we explore the impact of PEFT across diverse domains, including language, vision, and generative modeling, showing how these techniques offer strong performance with lower resource costs. We also discuss important open challenges in scalability, interpretability, and robustness, and suggest future directions such as federated learning, domain adaptation, and theoretical grounding. Our goal is to provide a unified understanding of PEFT and its growing role in enabling practical, efficient, and sustainable use of large models.
Flowco: Rethinking Data Analysis in the Age of LLMs
Freund, Stephen N., Simon, Brooke, Berger, Emery D., Jun, Eunice
Conducting data analysis typically involves authoring code to transform, visualize, analyze, and interpret data. Large language models (LLMs) are now capable of generating such code for simple, routine analyses. LLMs promise to democratize data science by enabling those with limited programming expertise to conduct data analyses, including in scientific research, business, and policymaking. However, analysts in many real-world settings must often exercise fine-grained control over specific analysis steps, verify intermediate results explicitly, and iteratively refine their analytical approaches. Such tasks present barriers to building robust and reproducible analyses using LLMs alone or even in conjunction with existing authoring tools (e.g., computational notebooks). This paper introduces Flowco, a new mixed-initiative system to address these challenges. Flowco leverages a visual dataflow programming model and integrates LLMs into every phase of the authoring process. A user study suggests that Flowco supports analysts, particularly those with less programming experience, in quickly authoring, debugging, and refining data analyses.
First and Second Order Approximations to Stochastic Gradient Descent Methods with Momentum Terms
Stochastic Gradient Descent (SGD) methods see many uses in optimization problems. Modifications to the algorithm, such as momentum-based SGD methods have been known to produce better results in certain cases. Much of this, however, is due to empirical information rather than rigorous proof. While the dynamics of gradient descent methods can be studied through continuous approximations, existing works only cover scenarios with constant learning rates or SGD without momentum terms. We present approximation results under weak assumptions for SGD that allow learning rates and momentum parameters to vary with respect to time.
Association between nutritional factors, inflammatory biomarkers and cancer types: an analysis of NHANES data using machine learning
Liu, Yuqing, Zhao, Meng, Hu, Guanlan, Zhang, Yuchen
Background. Diet and inflammation are critical factors influencing cancer risk. However, the combined impact of nutritional status and inflammatory biomarkers on cancer status and type, using machine learning (ML), remains underexplored. Objectives. This study investigates the association between nutritional factors, inflammatory biomarkers, and cancer status, and whether these relationships differ across cancer types using National Health and Nutrition Examination Survey (NHANES) data. Methods. We analyzed 24 macro- and micronutrients, C-reactive protein (CRP), and the advanced lung cancer inflammation index (ALI) in 26,409 NHANES participants (2,120 with cancer). Multivariable logistic regression assessed associations with cancer prevalence. We also examined whether these features differed across the five most common cancer types. To evaluate predictive value, we applied three ML models - Logistic Regression, Random Forest, and XGBoost - on the full feature set. Results. The cohort's mean age was 49.1 years; 34.7% were obese. Comorbidities such as anemia and liver conditions, along with nutritional factors like protein and several vitamins, were key predictors of cancer status. Among the models, Random Forest performed best, achieving an accuracy of 0.72. Conclusions. Higher-quality nutritional intake and lower levels of inflammation may offer protective effects against cancer. These findings highlight the potential of combining nutritional and inflammatory markers with ML to inform cancer prevention strategies.