Scientific imaging often involves long acquisition times to obtain high-quality data, especially when probing complex, heterogeneous systems. However, reducing acquisition time to increase throughput inevitably introduces significant noise into the measurements. We present a machine learning approach that not only denoises low-quality measurements with calibrated uncertainty bounds, but also reveals emergent structure in the latent space. By using ensembles of lightweight, randomly structured neural networks trained via conformal quantile regression, our method performs reliable denoising while uncovering interpretable spatial and chemical features -- without requiring labels or segmentation. Unlike conventional approaches focused solely on image restoration, our framework leverages the denoising process itself to drive the emergence of meaningful representations. We validate the approach on real-world geobiochemical imaging data, showing how it supports confident interpretation and guides experimental design under resource constraints.

Time series forecasting is critical for many applications, where deep learning-based point prediction models have demonstrated strong performance. However, in practical scenarios, there is also a need to quantify predictive uncertainty through online confidence intervals. Existing confidence interval modeling approaches building upon these deep point prediction models suffer from key limitations: they either require costly retraining, fail to fully leverage the representational strengths of deep models, or lack theoretical guarantees. To address these gaps, we propose a lightweight conformal prediction method that provides valid coverage and shorter interval lengths without retraining. Our approach leverages features extracted from pre-trained point prediction models to fit a residual predictor and construct confidence intervals, further enhanced by an adaptive coverage control mechanism. Theoretically, we prove that our method achieves asymptotic coverage convergence, with error bounds dependent on the feature quality of the underlying point prediction model. Experiments on 12 datasets demonstrate that our method delivers tighter confidence intervals while maintaining desired coverage rates. Code, model and dataset in \href{https://github.com/xiannanhuang/FFDCI}{Github}

--Almost all existing hierarchical federated learning (FL) models are limited to two aggregation layers, restricting scalability and flexibility in complex, large-scale networks. In this work, we propose a Multi-Layer Hierarchical Federated Learning framework ( QMLHFL), which appears to be the first study that generalizes hierarchical FL to arbitrary numbers of layers and network architectures through nested aggregation, while employing a layer-specific quantization scheme to meet communication constraints. We develop a comprehensive convergence analysis for QMLHFL and derive a general convergence condition and rate that reveal the effects of key factors, including quantization parameters, hierarchical architecture, and intra-layer iteration counts. Furthermore, we determine the optimal number of intra-layer iterations to maximize the convergence rate while meeting a deadline constraint that accounts for both communication and computation times. Our results show that QMLHFL consistently achieves high learning accuracy, even under high data heterogeneity, and delivers notably improved performance when optimized, compared to using randomly selected values. Federated Learning (FL) has gained significant attention as an approach that enables distributed model training without requiring centralized access to raw data [1]. This method is especially valuable in situations where data is costly to gather or difficult to consolidate. Additionally, FL supports improved computational efficiency by enabling simultaneous model training across multiple devices.

Longitudinal imaging analysis tracks disease progression and treatment response over time, providing dynamic insights into treatment efficacy and disease evolution. Radiomic features extracted from medical imaging can support the study of disease progression and facilitate longitudinal prediction of clinical outcomes. This study presents a probabilistic model for longitudinal response prediction, integrating baseline features with intermediate follow-ups. The probabilistic nature of the model naturally allows to handle the instrinsic uncertainty of the longitudinal prediction of disease progression. We evaluate the proposed model against state-of-the-art disease progression models in both a synthetic scenario and using a brain cancer dataset. Results demonstrate that the approach is competitive against existing methods while uniquely accounting for uncertainty and controlling the growth of problem dimensionality, eliminating the need for data from intermediate follow-ups.

Understanding cell identity and function through single-cell level sequencing data remains a key challenge in computational biology. We present a novel framework that leverages gene-specific textual annotations from the NCBI Gene database to generate biologically contextualized cell embeddings. For each cell in a single-cell RNA sequencing (scRNA-seq) dataset, we rank genes by expression level, retrieve their NCBI Gene descriptions, and transform these descriptions into vector embedding representations using large language models (LLMs). The models used include OpenAI text-embedding-ada-002, text-embedding-3-small, and text-embedding-3-large (Jan 2024), as well as domain-specific models BioBERT and SciBERT. Embeddings are computed via an expression-weighted average across the top N most highly expressed genes in each cell, providing a compact, semantically rich representation. This multimodal strategy bridges structured biological data with state-of-the-art language modeling, enabling more interpretable downstream applications such as cell-type clustering, cell vulnerability dissection, and trajectory inference.

The polysemantic nature of synthetic neurons in artificial intelligence language models is currently understood as the result of a necessary superposition of distributed features within the latent space. We propose an alternative approach, geometrically defining a neuron in layer n as a categorical vector space with a non-orthogonal basis, composed of categorical sub-dimensions extracted from preceding neurons in layer n-1. This categorical vector space is structured by the activation space of each neuron and enables, via an intra-neuronal attention process, the identification and utilization of a critical categorical zone for the efficiency of the language model - more homogeneous and located at the intersection of these different categorical sub-dimensions.

This study conducts a Quantitative Structure Property Relationship (QSPR) analysis to explore the correlation between the physical properties of drug molecules and their topological indices using machine learning techniques. While prior studies in drug design have focused on degree-based topological indices, this work analyzes a dataset of 166 drug molecules by computing degree-distance-based topological indices, incorporating vertex-edge weightings with respect to different six atomic properties (atomic number, atomic radius, atomic mass, density, electronegativity, ionization). Both linear models (Linear Regression, Lasso, and Ridge Regression) and nonlinear approaches (Random Forest, XGBoost, and Neural Networks) were employed to predict molecular properties. The results demonstrate the effectiveness of these indices in predicting specific physicochemical properties and underscore the practical relevance of computational methods in molecular property estimation. The study provides an innovative perspective on integrating topological indices with machine learning to enhance predictive accuracy, highlighting their potential application in drug discovery and development processes. This predictive may also explain that establishing a reliable relationship between topological indices and physical properties enables chemists to gain preliminary insights into molecular behavior before conducting experimental analyses, thereby optimizing resource utilization in cheminformatics research.

Microgrids have emerged as a pivotal solution in the quest for a sustainable and energy-efficient future. While microgrids offer numerous advantages, they are also prone to issues related to reliably forecasting renewable energy demand and production, protecting against cyberattacks, controlling operational costs, optimizing power flow, and regulating the performance of energy management systems (EMS). Tackling these energy management challenges is essential to facilitate microgrid applications and seamlessly incorporate renewable energy resources. Artificial intelligence (AI) has recently demonstrated immense potential for optimizing energy management in microgrids, providing efficient and reliable solutions. This paper highlights the combined benefits of enabling AI-based methodologies in the energy management systems of microgrids by examining the applicability and efficiency of AI-based EMS in achieving specific technical and economic objectives. The paper also points out several future research directions that promise to spearhead AI-driven EMS, namely the development of self-healing microgrids, integration with blockchain technology, use of Internet of things (IoT), and addressing interpretability, data privacy, scalability, and the prospects to generative AI in the context of future AI-based EMS.

Urban land use classification and mapping are critical for urban planning, resource management, and environmental monitoring. Existing remote sensing techniques often lack precision in complex urban environments due to the absence of ground-level details. Unlike aerial perspectives, street view images provide a ground-level view that captures more human and social activities relevant to land use in complex urban scenes. Existing street view-based methods primarily rely on supervised classification, which is challenged by the scarcity of high-quality labeled data and the difficulty of generalizing across diverse urban landscapes. This study introduces an unsupervised contrastive clustering model for street view images with a built-in geographical prior, to enhance clustering performance. When combined with a simple visual assignment of the clusters, our approach offers a flexible and customizable solution to land use mapping, tailored to the specific needs of urban planners. We experimentally show that our method can generate land use maps from geotagged street view image datasets of two cities. As our methodology relies on the universal spatial coherence of geospatial data ("Tobler's law"), it can be adapted to various settings where street view images are available, to enable scalable, unsupervised land use mapping and updating. The code will be available at https://github.com/lin102/CCGP.

Transformer representation learning is necessary for dynamic multi-modal physiological data on small-cohort patients Bingxu Wang, Min Ge, Kunzhi Cai, Yuqi Zhang, Zeyi Zhou, Wenjiao Li, Yachong Guo,, Wei Wang,, and Qing Zhou, Department of Thoracic and Cardiovascular Surgery, The Affiliated Drum Tower Hospital of Nanjing University Medical School, Kuang Yaming Honors School, Nanjing University, Nanjing 210023, China National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing 210093, China E-mail: yguo@nju.edu.cn; Abstract Postoperative delirium (POD), a severe neuropsychiatric complication affecting nearly 50% of high-risk surgical patients, is defined as an acute disorder of attention and cognition, It remains significantly underdiagnosed in the intensive care units (ICUs) due to subjective monitoring methods. Early and accurate diagnosis of POD is critical and achievable. Here, we propose a POD prediction framework comprising a Transformer representation model followed by traditional machine learning algorithms. We curated the first multi-modal POD dataset encompass-1 ing two patient types and evaluated the various Transformer architectures for representation learning. Empirical results indicate a consistent improvements of sensitivity and Youden index in patient TYPE I using Transformer representations, particularly our fusion adaptation of Pathformer. By enabling effective delirium diagnosis from postoperative day 1 to 3, our extensive experimental findings emphasize the potential of multi-modal physiological data and highlight the necessity of representation learning via multi-modal Transformer architecture in clinical diagnosis. Introduction Postoperative delirium(POD), a prevalent acute neuropsychiatric syndrome 1,2, affects more than 50% of surgical patients and significantly elevates morbidity and mortality risks 3 . Early identification is crucial yet challenging 4, primarily due to subjective assessment criteria and incomplete understanding of underlying pathophysiological mechanisms 5 .