Calibrating agent-based epidemic models is computationally demanding. We present a supervised machine learning calibrator that learns the inverse mapping from epidemic time series to SIR parameters. A three-layer bidirectional LSTM ingests 60-day incidence together with population size and recovery rate, and outputs transmission probability, contact rate, and R0. Training uses a composite loss with an epidemiology-motivated consistency penalty that encourages R0 \* recovery rate to equal transmission probability \* contact rate. In a 1000-scenario simulation study, we compare the calibrator with Approximate Bayesian Computation (likelihood-free MCMC). The method achieves lower error across all targets (MAE: R0 0.0616 vs 0.275; transmission 0.0715 vs 0.128; contact 1.02 vs 4.24), produces tighter predictive intervals with near nominal coverage, and reduces wall clock time from 77.4 s to 2.35 s per calibration. Although contact rate and transmission probability are partially nonidentifiable, the approach reproduces epidemic curves more faithfully than ABC, enabling fast and practical calibration. We evaluate it on SIR agent based epidemics generated with epiworldR and provide an implementation in R.

Out-of-distribution (OOD) detection helps models identify data outside the training categories, crucial for security applications. While feature-based post-hoc methods address this by evaluating data differences in the feature space without changing network parameters, they often require access to training data, which may not be suitable for some data privacy scenarios. This may not be suitable in scenarios where data privacy protection is a concern. In this paper, we propose a simple yet effective post-hoc method, termed Classifier-based Feature Reconstruction (ClaFR), from the perspective of subspace projection. It first performs an orthogonal decomposition of the classifier's weights to extract the class-known subspace, then maps the original data features into this subspace to obtain new data representations. Subsequently, the OOD score is determined by calculating the feature reconstruction error of the data within the subspace. Compared to existing OOD detection algorithms, our method does not require access to training data while achieving leading performance on multiple OOD benchmarks. Our code is released at https://github.com/Aie0923/ClaFR.

Large-scale biological discovery requires integrating massive, heterogeneous datasets like those from the JUMP Cell Painting consortium, but technical batch effects and a lack of generalizable models remain critical roadblocks. To address this, we introduce CellPainTR, a Transformer-based architecture designed to learn foundational representations of cellular morphology that are robust to batch effects. Unlike traditional methods that require retraining on new data, CellPainTR's design, featuring source-specific context tokens, allows for effective out-of-distribution (OOD) generalization to entirely unseen datasets without fine-tuning. We validate CellPainTR on the large-scale JUMP dataset, where it outperforms established methods like ComBat and Harmony in both batch integration and biological signal preservation. Critically, we demonstrate its robustness through a challenging OOD task on the unseen Bray et al. dataset, where it maintains high performance despite significant domain and feature shifts. Our work represents a significant step towards creating truly foundational models for image-based profiling, enabling more reliable and scalable cross-study biological analysis.

In reliability engineering, conventional surrogate models encounter the "curse of dimensionality" as the number of random variables increases. While the active learning Kriging surrogate approaches with high-dimensional model representation (HDMR) enable effective approximation of high-dimensional functions and are widely applied to optimization problems, there are rare studies specifically focused on reliability analysis, which prioritizes prediction accuracy in critical regions over uniform accuracy across the entire domain. This study develops an active learning surrogate model method based on the Kriging-HDMR modeling for reliability analysis. The proposed approach facilitates the approximation of high-dimensional limit state functions through a composite representation constructed from multiple low-dimensional sub-surrogate models. The architecture of the surrogate modeling framework comprises three distinct stages: developing single-variable sub-surrogate models for all random variables, identifying the requirements for coupling-variable sub-surrogate models, and constructing the coupling-variable sub-surrogate models. Optimization mathematical models for selection of design of experiment samples are formulated based on each stage's characteristics, with objectives incorporating uncertainty variance, predicted mean, sample location and inter-sample distances. A candidate sample pool-free approach is adopted to achieve the selection of informative samples. Numerical experiments demonstrate that the proposed method achieves high computational efficiency while maintaining strong predictive accuracy in solving high-dimensional reliability problems.

Sleep quality significantly impacts well-being. Therefore, healthcare providers and individuals need accessible and reliable forecasting tools for preventive interventions. This paper introduces an interpretable, individualized two-stage adaptive spatial-temporal model for predicting sleep quality scores. Our proposed framework combines multi-scale convolutional layers to model spatial interactions across multiple input variables, recurrent layers and attention mechanisms to capture long-term temporal dependencies, and a two-stage domain adaptation strategy to enhance generalization. The first adaptation stage is applied during training to mitigate overfitting on the training set. In the second stage, a source-free test-time adaptation mechanism is employed to adapt the model to new users without requiring labels. We conducted various experiments with five input window sizes (3, 5, 7, 9, and 11 days) and five prediction window sizes (1, 3, 5, 7, and 9 days). Our model consistently outperformed time series forecasting baseline approaches, including Long Short-Term Memory (LSTM), Informer, PatchTST, and TimesNet. The best performance was achieved with a three-day input window and a one-day prediction window, yielding a root mean square error (RMSE) of 0.216. Furthermore, the model demonstrated good predictive performance even for longer forecasting horizons (e.g, with a 0.257 RMSE for a three-day prediction window), highlighting its practical utility for real-world applications. We also conducted an explainability analysis to examine how different features influence sleep quality. These findings proved that the proposed framework offers a robust, adaptive, and explainable solution for personalized sleep forecasting using sparse data from commercial wearable devices.

Malware classification is a contemporary and ongoing challenge in cyber-security: modern obfuscation techniques are able to evade traditional static analysis, while dynamic analysis is too resource intensive to be deployed at a large scale. One prominent line of research addresses these limitations by converting malware binaries into 2D images by heuristically reshaping them into a 2D grid before resizing using Lanczos resampling. These images can then be classified based on their textural information using computer vision approaches. While this approach can detect obfuscated malware more effectively than static analysis, the process of converting files into 2D images results in significant information loss due to both quantisation noise, caused by rounding to integer pixel values, and the introduction of 2D dependencies which do not exist in the original data. This loss of signal limits the classification performance of the downstream model. This work addresses these weaknesses by instead resizing the files into 1D signals which avoids the need for heuristic reshaping, and additionally these signals do not suffer from quantisation noise due to being stored in a floating-point format. It is shown that existing 2D CNN architectures can be readily adapted to classify these 1D signals for improved performance. Furthermore, a bespoke 1D convolutional neural network, based on the ResNet architecture and squeeze-and-excitation layers, was developed to classify these signals and evaluated on the MalNet dataset. It was found to achieve state-of-the-art performance on binary, type, and family level classification with F1 scores of 0.874, 0.503, and 0.507, respectively, paving the way for future models to operate on the proposed signal modality.

Eye-tracking technology can aid in understanding neurodevelopmental disorders and tracing a person's identity. However, this technology poses a significant risk to privacy, as it captures sensitive information about individuals and increases the likelihood that data can be traced back to them. This paper proposes a human-centered framework designed to prevent identity backtracking while preserving the pedagogical benefits of AI-powered eye tracking in interactive learning environments. We explore how real-time data anonymization, ethical design principles, and regulatory compliance (such as GDPR) can be integrated to build trust and transparency. We first demonstrate the potential for backtracking student IDs and diagnoses in various scenarios using serious game-based eye-tracking data. We then provide a two-stage privacy-preserving framework that prevents participants from being tracked while still enabling diagnostic classification. The first phase covers four scenarios: I) Predicting disorder diagnoses based on different game levels. II) Predicting student IDs based on different game levels. III) Predicting student IDs based on randomized data. IV) Utilizing K-Means for out-of-sample data. In the second phase, we present a two-stage framework that preserves privacy. We also employ Federated Learning (FL) across multiple clients, incorporating a secure identity management system with dummy IDs and administrator-only access controls. In the first phase, the proposed framework achieved 99.3% accuracy for scenario 1, 63% accuracy for scenario 2, and 99.7% accuracy for scenario 3, successfully identifying and assigning a new student ID in scenario 4. In phase 2, we effectively prevented backtracking and established a secure identity management system with dummy IDs and administrator-only access controls, achieving an overall accuracy of 99.40%.

Since their introduction by Kipf and Welling in $2017$, a primary use of graph convolutional networks is transductive node classification, where missing labels are inferred within a single observed graph and its feature matrix. Despite the widespread use of the network model, the statistical foundations of transductive learning remain limited, as standard inference frameworks typically rely on multiple independent samples rather than a single graph. In this work, we address these gaps by developing new concentration-of-measure tools that leverage the geometric regularities of large graphs via low-dimensional metric embeddings. The emergent regularities are captured using a random graph model; however, the methods remain applicable to deterministic graphs once observed. We establish two principal learning results. The first concerns arbitrary deterministic $k$-vertex graphs, and the second addresses random graphs that share key geometric properties with an Erdős-Rényi graph $\mathbf{G}=\mathbf{G}(k,p)$ in the regime $p \in \mathcal{O}((\log (k)/k)^{1/2})$. The first result serves as the basis for and illuminates the second. We then extend these results to the graph convolutional network setting, where additional challenges arise. Lastly, our learning guarantees remain informative even with a few labelled nodes $N$ and achieve the optimal nonparametric rate $\mathcal{O}(N^{-1/2})$ as $N$ grows.

Electronic Health Records (EHRs), comprising diverse clinical data such as diagnoses, medications, and laboratory results, hold great promise for translational research. EHR-derived data have advanced disease prevention, improved clinical trial recruitment, and generated real-world evidence. Synthesizing EHRs across institutions enables large-scale, generalizable studies that capture rare diseases and population diversity, but remains hindered by the heterogeneity of medical codes, institution-specific terminologies, and the absence of standardized data structures. These barriers limit the interpretability, comparability, and scalability of EHR-based analyses, underscoring the need for robust methods to harmonize and extract meaningful insights from distributed, heterogeneous data. To address this, we propose MASH (Multi-source Automated Structured Hierarchy), a fully automated framework that aligns medical codes across institutions using neural optimal transport and constructs hierarchical graphs with learned hyperbolic embeddings. During training, MASH integrates information from pre-trained language models, co-occurrence patterns, textual descriptions, and supervised labels to capture semantic and hierarchical relationships among medical concepts more effectively. Applied to real-world EHR data, including diagnosis, medication, and laboratory codes, MASH produces interpretable hierarchical graphs that facilitate the navigation and understanding of heterogeneous clinical data. Notably, it generates the first automated hierarchies for unstructured local laboratory codes, establishing foundational references for downstream applications.

Representation-based multi-task learning (MTL) improves efficiency by learning a shared structure across tasks, but its practical application is often hindered by contamination, outliers, or adversarial tasks. Most existing methods and theories assume a clean or near-clean setting, failing when contamination is significant. This paper tackles representation MTL with an unknown and potentially large contamination proportion, while also allowing for heterogeneity among inlier tasks. We introduce a Robust and Adaptive Spectral method (RAS) that can distill the shared inlier representation effectively and efficiently, while requiring no prior knowledge of the contamination level or the true representation dimension. Theoretically, we provide non-asymptotic error bounds for both the learned representation and the per-task parameters. These bounds adapt to inlier task similarity and outlier structure, and guarantee that RAS performs at least as well as single-task learning, thus preventing negative transfer. We also extend our framework to transfer learning with corresponding theoretical guarantees for the target task. Extensive experiments confirm our theory, showcasing the robustness and adaptivity of RAS, and its superior performance in regimes with up to 80\% task contamination.