Support Vector Machines
Sublinear Time Algorithms for Several Geometric Optimization (With Outliers) Problems In Machine Learning
In this paper, we study several important geometric optimization problems arising in machine learning. First, we revisit the Minimum Enclosing Ball (MEB) problem in Euclidean space $\mathbb{R}^d$. The problem has been extensively studied before, but real-world machine learning tasks often need to handle large-scale datasets so that we cannot even afford linear time algorithms. Motivated by the recent studies on {\em beyond worst-case analysis}, we introduce the notion of stability for MEB, which is natural and easy to understand. Roughly speaking, an instance of MEB is stable, if the radius of the resulting ball cannot be significantly reduced by removing a small fraction of the input points. Under the stability assumption, we present two sampling algorithms for computing radius-approximate MEB with sample complexities independent of the number of input points $n$. In particular, the second algorithm has the sample complexity even independent of the dimensionality $d$. We also consider the general case without the stability assumption. We present a hybrid algorithm that can output either a radius-approximate MEB or a covering-approximate MEB. Our algorithm improves the running time and the number of passes for the previous sublinear MEB algorithms. Our method relies on two novel techniques, the Uniform-Adaptive Sampling method and Sandwich Lemma. Furthermore, we observe that these two techniques can be generalized to design sublinear time algorithms for a broader range of geometric optimization problems with outliers in high dimensions, including MEB with outliers, one-class and two-class linear SVMs with outliers, $k$-center clustering with outliers, and flat fitting with outliers. Our proposed algorithms also work fine for kernels.
Reduced Deep Convolutional Activation Features (R-DeCAF) in Histopathology Images to Improve the Classification Performance for Breast Cancer Diagnosis
Morovati, Bahareh, Lashgari, Reza, Hajihasani, Mojtaba, Shabani, Hasti
Breast cancer is the second most common cancer among women worldwide. Diagnosis of breast cancer by the pathologists is a time-consuming procedure and subjective. Computer aided diagnosis frameworks are utilized to relieve pathologist workload by classifying the data automatically, in which deep convolutional neural networks (CNNs) are effective solutions. The features extracted from activation layer of pre-trained CNNs are called deep convolutional activation features (DeCAF). In this paper, we have analyzed that all DeCAF features are not necessarily led to a higher accuracy in the classification task and dimension reduction plays an important role. Therefore, different dimension reduction methods are applied to achieve an effective combination of features by capturing the essence of DeCAF features. To this purpose, we have proposed reduced deep convolutional activation features (R-DeCAF). In this framework, pre-trained CNNs such as AlexNet, VGG-16 and VGG-19 are utilized in transfer learning mode as feature extractors. DeCAF features are extracted from the first fully connected layer of the mentioned CNNs and support vector machine has been used for binary classification. Among linear and nonlinear dimensionality reduction algorithms, linear approaches such as principal component analysis (PCA) represent a better combination among deep features and lead to a higher accuracy in the classification task using small number of features considering specific amount of cumulative explained variance (CEV) of features. The proposed method is validated using experimental BreakHis dataset. Comprehensive results show improvement in the classification accuracy up to 4.3% with less computational time. Best achieved accuracy is 91.13% for 400x data with feature vector size (FVS) of 23 and CEV equals to 0.15 using pre-trained AlexNet as feature extractor and PCA as feature reduction algorithm.
Integrating Transformer and Autoencoder Techniques with Spectral Graph Algorithms for the Prediction of Scarcely Labeled Molecular Data
Hayes, Nicole, Merkurjev, Ekaterina, Wei, Guo-Wei
In molecular and biological sciences, experiments are expensive, time-consuming, and often subject to ethical constraints. Consequently, one often faces the challenging task of predicting desirable properties from small data sets or scarcely-labeled data sets. Although transfer learning can be advantageous, it requires the existence of a related large data set. This work introduces three graph-based models incorporating Merriman-Bence-Osher (MBO) techniques to tackle this challenge. Specifically, graph-based modifications of the MBO scheme are integrated with state-of-the-art techniques, including a home-made transformer and an autoencoder, in order to deal with scarcely-labeled data sets. In addition, a consensus technique is detailed. The proposed models are validated using five benchmark data sets. We also provide a thorough comparison to other competing methods, such as support vector machines, random forests, and gradient boosting decision trees, which are known for their good performance on small data sets. The performances of various methods are analyzed using residue-similarity (R-S) scores and R-S indices. Extensive computational experiments and theoretical analysis show that the new models perform very well even when as little as 1% of the data set is used as labeled data.
Is word segmentation necessary for Vietnamese sentiment classification?
Nguyen, Duc-Vu, Nguyen, Ngan Luu-Thuy
To the best of our knowledge, this paper made the first attempt to answer whether word segmentation is necessary for Vietnamese sentiment classification. To do this, we presented five pre-trained monolingual S4- based language models for Vietnamese, including one model without word segmentation, and four models using RDRsegmenter, uitnlp, pyvi, or underthesea toolkits in the pre-processing data phase. According to comprehensive experimental results on two corpora, including the VLSP2016-SA corpus of technical article reviews from the news and social media and the UIT-VSFC corpus of the educational survey, we have two suggestions. Firstly, using traditional classifiers like Naive Bayes or Support Vector Machines, word segmentation maybe not be necessary for the Vietnamese sentiment classification corpus, which comes from the social domain. Secondly, word segmentation is necessary for Vietnamese sentiment classification when word segmentation is used before using the BPE method and feeding into the deep learning model. In this way, the RDRsegmenter is the stable toolkit for word segmentation among the uitnlp, pyvi, and underthesea toolkits.
An Efficient Hierarchical Kriging Modeling Method for High-dimension Multi-fidelity Problems
Multi-fidelity Kriging model is a promising technique in surrogate-based design as it can balance the model accuracy and cost of sample preparation by fusing low- and high-fidelity data. However, the cost for building a multi-fidelity Kriging model increases significantly with the increase of the problem dimension. To attack this issue, an efficient Hierarchical Kriging modeling method is proposed. In building the low-fidelity model, the maximal information coefficient is utilized to calculate the relative value of the hyperparameter. With this, the maximum likelihood estimation problem for determining the hyperparameters is transformed as a one-dimension optimization problem, which can be solved in an efficient manner and thus improve the modeling efficiency significantly. A local search is involved further to exploit the search space of hyperparameters to improve the model accuracy. The high-fidelity model is built in a similar manner with the hyperparameter of the low-fidelity model served as the relative value of the hyperparameter for high-fidelity model. The performance of the proposed method is compared with the conventional tuning strategy, by testing them over ten analytic problems and an engineering problem of modeling the isentropic efficiency of a compressor rotor. The empirical results demonstrate that the modeling time of the proposed method is reduced significantly without sacrificing the model accuracy. For the modeling of the isentropic efficiency of the compressor rotor, the cost saving associated with the proposed method is about 90% compared with the conventional strategy. Meanwhile, the proposed method achieves higher accuracy.
Reservoir kernels and Volterra series
Gonon, Lukas, Grigoryeva, Lyudmila, Ortega, Juan-Pablo
A universal kernel is constructed whose sections approximate any causal and time-invariant filter in the fading memory category with inputs and outputs in a finite-dimensional Euclidean space. This kernel is built using the reservoir functional associated with a state-space representation of the Volterra series expansion available for any analytic fading memory filter. It is hence called the Volterra reservoir kernel. Even though the state-space representation and the corresponding reservoir feature map are defined on an infinite-dimensional tensor algebra space, the kernel map is characterized by explicit recursions that are readily computable for specific data sets when employed in estimation problems using the representer theorem. We showcase the performance of the Volterra reservoir kernel in a popular data science application in relation to bitcoin price prediction.
LOSDD: Leave-Out Support Vector Data Description for Outlier Detection
Boiar, Daniel, Liebig, Thomas, Schubert, Erich
Support Vector Machines have been successfully used for one-class classification (OCSVM, SVDD) when trained on clean data, but they work much worse on dirty data: outliers present in the training data tend to become support vectors, and are hence considered "normal". In this article, we improve the effectiveness to detect outliers in dirty training data with a leave-out strategy: by temporarily omitting one candidate at a time, this point can be judged using the remaining data only. We show that this is more effective at scoring the outlierness of points than using the slack term of existing SVM-based approaches. Identified outliers can then be removed from the data, such that outliers hidden by other outliers can be identified, to reduce the problem of masking. Naively, this approach would require training N individual SVMs (and training $O(N^2)$ SVMs when iteratively removing the worst outliers one at a time), which is prohibitively expensive. We will discuss that only support vectors need to be considered in each step and that by reusing SVM parameters and weights, this incremental retraining can be accelerated substantially. By removing candidates in batches, we can further improve the processing time, although it obviously remains more costly than training a single SVM.
Feature Selection Approaches for Optimising Music Emotion Recognition Methods
Cai, Le, Ferguson, Sam, Lu, Haiyan, Fang, Gengfa
The high feature dimensionality is a challenge in music emotion recognition. There is no common consensus on a relation between audio features and emotion. The MER system uses all available features to recognize emotion; however, this is not an optimal solution since it contains irrelevant data acting as noise. In this paper, we introduce a feature selection approach to eliminate redundant features for MER. We created a Selected Feature Set (SFS) based on the feature selection algorithm (FSA) and benchmarked it by training with two models, Support Vector Regression (SVR) and Random Forest (RF) and comparing them against with using the Complete Feature Set (CFS). The result indicates that the performance of MER has improved for both Random Forest (RF) and Support Vector Regression (SVR) models by using SFS. We found using FSA can improve performance in all scenarios, and it has potential benefits for model efficiency and stability for MER task. NTRODUCTION Music has become an indispensable part of people's lives. It plays a vital role in our world. We use music in almost every field, such as public places, entertainment, and even therapy. As the technology grows, the widespread adoption of digital audio formats, especially MP3, music distribution has become very efficient and seamless. The primary method of music consumption has shifted from retail stores to online and internet-based distribution channels. Subscription services had now become popular where the consumers now have access to much larger libraries than when albums were purchased individually. Traditional approaches to managing digital music libraries using of embedded metadata are no longer sufficient to deal with such a large database since the text cannot fully convey the expression of the musical content [1] [2], therefore the content-based music retrieval system can be ideal to handle this task more efficiency and opens a new perspective to discover music.
Personalized Student Attribute Inference
Askia, Khalid Moustapha, Meurs, Marie-Jean
Accurately predicting their future performance can ensure students successful graduation, and help them save both time and money. However, achieving such predictions faces two challenges, mainly due to the diversity of students' background and the necessity of continuously tracking their evolving progress. The goal of this work is to create a system able to automatically detect students in difficulty, for instance predicting if they are likely to fail a course. We compare a naive approach widely used in the literature, which uses attributes available in the data set (like the grades), with a personalized approach we called Personalized Student Attribute Inference (PSAI). With our model, we create personalized attributes to capture the specific background of each student. Both approaches are compared using machine learning algorithms like decision trees, support vector machine or neural networks.
Higher order organizational features can distinguish protein interaction networks of disease classes: a case study of neoplasms and neurological diseases
Neoplasms (NPs) and neurological diseases and disorders (NDDs) are amongst the major classes of diseases underlying deaths of a disproportionate number of people worldwide. To determine if there exist some distinctive features in the local wiring patterns of protein interactions emerging at the onset of a disease belonging to either of these two classes, we examined 112 and 175 protein interaction networks belonging to NPs and NDDs, respectively. Orbit usage profiles (OUPs) for each of these networks were enumerated by investigating the networks' local topology. 56 non-redundant OUPs (nrOUPs) were derived and used as network features for classification between these two disease classes. Four machine learning classifiers, namely, k-nearest neighbour (KNN), support vector machine (SVM), deep neural network (DNN), random forest (RF) were trained on these data. DNN obtained the greatest average AUPRC (0.988) among these classifiers. DNNs developed on node2vec and the proposed nrOUPs embeddings were compared using 5-fold cross validation on the basis of average values of the six of performance measures, viz., AUPRC, Accuracy, Sensitivity, Specificity, Precision and MCC. It was found that nrOUPs based classifier performed better in all of these six performance measures.