Regression
Making Bayesian Predictive Models Interpretable: A Decision Theoretic Approach
A salient approach to interpretable machine learning is to restrict modeling to simple and hence understandable models. In the Bayesian framework, this can be pursued by restricting the model structure and prior to favor interpretable models. Fundamentally, however, interpretability is about users' preferences, not the data generation mechanism: it is more natural to formulate interpretability as a utility function. In this work, we propose an interpretability utility, which explicates the trade-off between explanation fidelity and interpretability in the Bayesian framework. The method consists of two steps.
Inference in High-Dimensional Linear Regression via Lattice Basis Reduction and Integer Relation Detection
Gamarnik, David, Kızıldağ, Eren C., Zadik, Ilias
We focus on the high-dimensional linear regression problem, where the algorithmic goal is to efficiently infer an unknown feature vector $\beta^*\in\mathbb{R}^p$ from its linear measurements, using a small number $n$ of samples. Unlike most of the literature, we make no sparsity assumption on $\beta^*$, but instead adopt a different regularization: In the noiseless setting, we assume $\beta^*$ consists of entries, which are either rational numbers with a common denominator $Q\in\mathbb{Z}^+$ (referred to as $Q$-rationality); or irrational numbers supported on a rationally independent set of bounded cardinality, known to learner; collectively called as the mixed-support assumption. Using a novel combination of the PSLQ integer relation detection, and LLL lattice basis reduction algorithms, we propose a polynomial-time algorithm which provably recovers a $\beta^*\in\mathbb{R}^p$ enjoying the mixed-support assumption, from its linear measurements $Y=X\beta^*\in\mathbb{R}^n$ for a large class of distributions for the random entries of $X$, even with one measurement $(n=1)$. In the noisy setting, we propose a polynomial-time, lattice-based algorithm, which recovers a $\beta^*\in\mathbb{R}^p$ enjoying $Q$-rationality, from its noisy measurements $Y=X\beta^*+W\in\mathbb{R}^n$, even with a single sample $(n=1)$. We further establish for large $Q$, and normal noise, this algorithm tolerates information-theoretically optimal level of noise. We then apply these ideas to develop a polynomial-time, single-sample algorithm for the phase retrieval problem. Our methods address the single-sample $(n=1)$ regime, where the sparsity-based methods such as LASSO and Basis Pursuit are known to fail. Furthermore, our results also reveal an algorithmic connection between the high-dimensional linear regression problem, and the integer relation detection, randomized subset-sum, and shortest vector problems.
Structure Learning of Gaussian Markov Random Fields with False Discovery Rate Control
Lee, Sangkyun, Sobczyk, Piotr, Bogdan, Malgorzata
In this paper, we propose a new estimation procedure for discovering the structure of Gaussian Markov random fields (MRFs) with false discovery rate (FDR) control, making use of the sorted l1-norm (SL1) regularization. A Gaussian MRF is an acyclic graph representing a multivariate Gaussian distribution, where nodes are random variables and edges represent the conditional dependence between the connected nodes. Since it is possible to learn the edge structure of Gaussian MRFs directly from data, Gaussian MRFs provide an excellent way to understand complex data by revealing the dependence structure among many inputs features, such as genes, sensors, users, documents, etc. In learning the graphical structure of Gaussian MRFs, it is desired to discover the actual edges of the underlying but unknown probabilistic graphical model-it becomes more complicated when the number of random variables (features) p increases, compared to the number of data points n. In particular, when p >> n, it is statistically unavoidable for any estimation procedure to include false edges. Therefore, there have been many trials to reduce the false detection of edges, in particular, using different types of regularization on the learning parameters. Our method makes use of the SL1 regularization, introduced recently for model selection in linear regression. We focus on the benefit of SL1 regularization that it can be used to control the FDR of detecting important random variables. Adapting SL1 for probabilistic graphical models, we show that SL1 can be used for the structure learning of Gaussian MRFs using our suggested procedure nsSLOPE (neighborhood selection Sorted L-One Penalized Estimation), controlling the FDR of detecting edges.
Dropping forward-backward algorithms for feature selection
In this era of big data, feature selection techniques, which have long been proven to simplify the model, makes the model more comprehensible, speed up the process of learning, have become more and more important. Among many developed methods, forward, backward and stepwise feature selection regression remained widely used due to their simplicity and efficiency. However, they are not sufficient enough when it comes to large datasets. In this paper, we analyze the issues associated with those approaches and introduce a novel algorithm that may boost the speed up to 65.77% compared to stepwise while maintaining good performance compared to stepwise selection in terms of the number of selected features and error rates.
Look Out Zillow Here Comes Jestimate!
As someone with expertise in both real estate and data science, I've always been fascinated by Zillow's Zestimate. In the spirit of competition, I've developed Jim's estimate or Jestimate! The following interactive map contains 2018 home sales in San Francisco by neighborhood. Click on the neighborhood and then click on a home in the data table to see the Jestimate results versus the actual sales price. Zestimate uses a proprietary machine learning formula to estimate the current market value of a home.
Minimax Rate Optimal Adaptive Nearest Neighbor Classification and Regression
For both classification and regression problems, existing works have shown that, if the distribution of the feature vector has bounded support and the probability density function is bounded away from zero in its support, the convergence rate of the standard kNN method, in which k is the same for all test samples, is minimax optimal. On the contrary, if the distribution has unbounded support, we show that there is a gap between the convergence rate achieved by the standard kNN method and the minimax bound. To close this gap, we propose an adaptive kNN method, in which different k is selected for different samples. Our selection rule does not require precise knowledge of the underlying distribution of features. The new proposed method significantly outperforms the standard one. We characterize the convergence rate of the proposed adaptive method, and show that it matches the minimax lower bound.
Orthogonal variance decomposition based feature selection
Existing feature selection methods fail to properly account for interactions between features when evaluating feature subsets. In this paper, we attempt to remedy this issue by using orthogonal variance decomposition to evaluate features. The orthogonality of the decomposition allows us to directly calculate the total contribution of a feature to the output variance. Thus we obtain an efficient algorithm for feature evaluation which takes into account interactions among features. Numerical experiments demonstrate that our method accurately identifies relevant features and improves the accuracy of numerical models.
Targeted Estimation of Heterogeneous Treatment Effect in Observational Survival Analysis
The aim of clinical effectiveness research using repositories of electronic health records is to identify what health interventions 'work best' in real-world settings. Since there are several reasons why the net benefit of intervention may differ across patients, current comparative effectiveness literature focuses on investigating heterogeneous treatment effect and predicting whether an individual might benefit from an intervention. The majority of this literature has concentrated on the estimation of the effect of treatment on binary outcomes. However, many medical interventions are evaluated in terms of their effect on future events, which are subject to loss to follow-up. In this study, we describe a framework for the estimation of heterogeneous treatment effect in terms of differences in time-to-event (survival) probabilities. We divide the problem into three phases: (1) estimation of treatment effect conditioned on unique sets of the covariate vector; (2) identification of features important for heterogeneity using an ensemble of non-parametric variable importance methods; and (3) estimation of treatment effect on the reference classes defined by the previously selected features, using one-step Targeted Maximum Likelihood Estimation. We conducted a series of simulation studies and found that this method performs well when either sample size or event rate is high enough and the number of covariates contributing to the effect heterogeneity is moderate. An application of this method to a clinical case study was conducted by estimating the effect of oral anticoagulants on newly diagnosed non-valvular atrial fibrillation patients using data from the UK Clinical Practice Research Datalink.
Shallow Art: Art Extension Through Simple Machine Learning
Shallow Art presents, implements, and tests the use of simple single-output classification and regression models for the purpose of art generation. V arious machine learning algorithms are trained on collections of computer generated images, artworks from Vincent van Gogh, and artworks from Rembrandt van Rijn. These models are then provided half of an image and asked to complete the missing side. The resulting images are displayed, and we explore implications for computational creativity.
Prediction of Reaction Time and Vigilance Variability from Spatiospectral Features of Resting-State EEG in a Long Sustained Attention Task
Torkamani-Azar, Mastaneh, Kanik, Sumeyra Demir, Aydin, Serap, Cetin, Mujdat
Resting-state brain networks represent the intrinsic state of the brain during the majority of cognitive and sensorimotor tasks. However, no study has yet presented concise predictors of task-induced vigilance variability from spectrospatial features of the pre-task, resting-state electroencephalograms (EEG). We asked ten healthy volunteers (6 females, 4 males) to participate in 105-minute fixed-sequence-varying-duration sessions of sustained attention to response task (SART). A novel and adaptive vigilance scoring scheme was designed based on the performance and response time in consecutive trials, and demonstrated large inter-participant variability in terms of maintaining consistent tonic performance. Multiple linear regression using feature relevance analysis obtained significant predictors of the mean cumulative vigilance score (CVS), mean response time, and variabilities of these scores from the resting-state, band-power ratios of EEG signals, p<0.05. Single-layer neural networks trained with cross-validation also captured different associations for the beta sub-bands. Increase in the gamma (28-48 Hz) and upper beta ratios from the left central and temporal regions predicted slower reactions and more inconsistent vigilance as explained by the increased activation of default mode network (DMN) and differences between the high- and low-attention networks at temporal regions. Higher ratios of parietal alpha from the Brodmann's areas 18, 19, and 37 during the eyes-open states predicted slower responses but more consistent CVS and reactions associated with the superior ability in vigilance maintenance. The proposed framework and these findings on the most stable and significant attention predictors from the intrinsic EEG power ratios can be used to model attention variations during the calibration sessions of BCI applications and vigilance monitoring systems.