Clustering
Characterization of Scoring Rules with Distances: Application to the Clustering of Rankings
Viappiani, Paolo (Sorbonne Universities and CNRS)
Positional scoring rules are often used for rank aggregation. In this work we study how scoring rules can be formulated as the minimization of some distance measures between rankings, and we also consider a new family of aggregation methods, called biased scoring rules. This work extends a previous known observation connecting Borda count with the minimization of the sum of the Spearman distances (calculated with respect to a set of input rankings). In particular we consider generalizations of the Spearman distance that can give different weights to items and positions; we also handle the case of incomplete rank data. This has applications in the clustering of rank data, where two main steps need to be performed: aggregating rankings of the same cluster into a representative ranking (the cluster's centroid) and assigning each ranking to its closest centroid. Using the proper combination of scoring rules (for aggregation) and distances (for assignment), it is possible to perform clustering in a computationally efficient way and as well account for specific desired behaviors (give more weight to top positions, bias the centroids in favor of particular items).
Generalized Transitive Distance with Minimum Spanning Random Forest
Yu, Zhiding (Carnegie Mellon University) | Liu, Weiyang (Peking University) | Liu, Wenbo (Carnegie Mellon University) | Peng, Xi (Research Agency for Science, Technology and Research (A*STAR) Singapore) | Hui, Zhuo (Carnegie Mellon University) | Kumar, B. V. K. Vijaya (Carnegie Mellon University)
Transitive distance is an ultrametric with elegant properties for clustering. Conventional transitive distance can be found by referring to the minimum spanning tree (MST). We show that such distance metric can be generalized onto a minimum spanning random forest (MSRF) with element-wise max pooling over the set of transitive distance matrices from an MSRF. Our proposed approach is both intuitively reasonable and theoretically attractive. Intuitively, max pooling alleviates undesired short links with single MST when noise is present. Theoretically, one can see that the distance metric obtained max pooling is still an ultrametric, rendering many good clustering properties. Comprehensive experiments on data clustering and image segmentation show that MSRF with max pooling improves the clustering performance over single MST and achieves state of the art performance on the Berkeley Segmentation Dataset.
Sampling with Minimum Sum of Squared Similarities for Nystrom-Based Large Scale Spectral Clustering
Bouneffouf, Djallel (Canada's Michael Smith Genome Sciences Centre) | Birol, Inanc (Canada's Michael Smith Genome Sciences Centre)
The Nystrom method provides an efficient sampling approach for large scale clustering problems, by generating a low-rank matrix approximation. However, existing sampling methods are limited by accuracy and computing time. This paper proposes an improved Nystrom-based clustering algorithm with a new sampling procedure, Minimum Sum of Squared Similarities (MSSS). Experiments on synthetic and real data sets show that the proposed sampling performs with higher accuracy than existing algorithms, applied to Nystrom-based spectral clustering problems. Furthermore, we provide a theoretical analysis that allows us to define the upper bound of the Frobenius norm error of the MSSS.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Instance-Wise Weighted Nonnegative Matrix Factorization for Aggregating Partitions with Locally Reliable Clusters
Zheng, Xiaodong (Fudan University) | Zhu, Shanfeng (Fudan University) | Gao, Junning (Fudan University) | Mamitsuka, Hiroshi (Kyoto University)
We address an ensemble clustering problem, where reliable clusters are locally embedded in given multiple partitions. We propose a new nonnegative matrix factorization (NMF)-based method, in which locally reliable clusters are explicitly considered by using instance-wise weights over clusters. Our method factorizes the input cluster assignment matrix into two matrices H and W, which are optimized by iteratively 1) updating H and W while keeping the weight matrix constant and 2) updating the weight matrix while keeping H and W constant, alternatively. The weights in the second step were updated by solving a convex problem, which makes our algorithm significantly faster than existing NMF-based ensemble clustering methods. We empirically proved that our method outperformed a lot of cutting-edge ensemble clustering methods by using a variety of datasets.
Beyond Hartigan Consistency: Merge Distortion Metric for Hierarchical Clustering
Eldridge, Justin, Belkin, Mikhail, Wang, Yusu
Hierarchical clustering is a popular method for analyzing data which associates a tree to a dataset. Hartigan consistency has been used extensively as a framework to analyze such clustering algorithms from a statistical point of view. Still, as we show in the paper, a tree which is Hartigan consistent with a given density can look very different than the correct limit tree. Specifically, Hartigan consistency permits two types of undesirable configurations which we term over-segmentation and improper nesting. Moreover, Hartigan consistency is a limit property and does not directly quantify difference between trees. In this paper we identify two limit properties, separation and minimality, which address both over-segmentation and improper nesting and together imply (but are not implied by) Hartigan consistency. We proceed to introduce a merge distortion metric between hierarchical clusterings and show that convergence in our distance implies both separation and minimality. We also prove that uniform separation and minimality imply convergence in the merge distortion metric. Furthermore, we show that our merge distortion metric is stable under perturbations of the density. Finally, we demonstrate applicability of these concepts by proving convergence results for two clustering algorithms. First, we show convergence (and hence separation and minimality) of the recent robust single linkage algorithm of Chaudhuri and Dasgupta (2010). Second, we provide convergence results on manifolds for topological split tree clustering.