Biclustering, the process of simultaneously clustering the rows and columns of a data matrix, is a popular and effective tool for finding structure in a high-dimensional dataset. Many biclustering procedures appear to work well in practice, but most do not have associated consistency guarantees. To address this shortcoming, we propose a new biclustering procedure based on profile likelihood. The procedure applies to a broad range of data modalities, including binary, count, and continuous observations. We prove that the procedure recovers the true row and column classes when the dimensions of the data matrix tend to infinity, even if the functional form of the data distribution is misspecified. The procedure requires computing a combinatorial search, which can be expensive in practice. Rather than performing this search directly, we propose a new heuristic optimization procedure based on the Kernighan-Lin heuristic, which has nice computational properties and performs well in simulations. We demonstrate our procedure with applications to congressional voting records, and microarray analysis.

Motivation: Public and private repositories of experimental data are growing to sizes that require dedicated methods for finding relevant data. To improve on the state of the art of keyword searches from annotations, methods for content-based retrieval have been proposed. In the context of gene expression experiments, most methods retrieve gene expression profiles, requiring each experiment to be expressed as a single profile, typically of case vs. control. A more general, recently suggested alternative is to retrieve experiments whose models are good for modelling the query dataset. However, for very noisy and high-dimensional query data, this retrieval criterion turns out to be very noisy as well. Results: We propose doing retrieval using a denoised model of the query dataset, instead of the original noisy dataset itself. To this end, we introduce a general probabilistic framework, where each experiment is modelled separately and the retrieval is done by finding related models. For retrieval of gene expression experiments, we use a probabilistic model called product partition model, which induces a clustering of genes that show similar expression patterns across a number of samples. The suggested metric for retrieval using clusterings is the normalized information distance. Empirical results finally suggest that inference for the full probabilistic model can be approximated with good performance using computationally faster heuristic clustering approaches (e.g. $k$-means). The method is highly scalable and straightforward to apply to construct a general-purpose gene expression experiment retrieval method. Availability: The method can be implemented using standard clustering algorithms and normalized information distance, available in many statistical software packages.

We present the Mind the Gap Model (MGM), an approach for interpretable feature extractionand selection. By placing interpretability criteria directly into the model, we allow for the model to both optimize parameters related to interpretability andto directly report a global set of distinguishable dimensions to assist with further data exploration and hypothesis generation. MGM extracts distinguishing features on real-world datasets of animal features, recipes ingredients, and disease co-occurrence.It also maintains or improves performance when compared to related approaches. We perform a user study with domain experts to show the MGM's ability to help with dataset exploration.

We investigate two novel mixed robust/average-case submodular data partitioning problems that we collectively call Submodular Partitioning. These problems generalize purelyrobust instances of the problem, namely max-min submodular fair allocation (SFA) [12] and min-max submodular load balancing (SLB) [25], and also average-case instances, that is the submodular welfare problem (SWP) [26] and submodular multiway partition (SMP) [5]. While the robust versions have been studied in the theory community [11, 12, 16, 25, 26], existing work has focused on tight approximation guarantees, and the resultant algorithms are not generally scalable to large real-world applications. This is in contrast to the average case, where most of the algorithms are scalable. In the present paper, we bridge this gap, by proposing several new algorithms (including greedy, majorization-minimization, minorization-maximization, and relaxation algorithms) that not only scale to large datasets but that also achieve theoretical approximation guarantees comparable to the state-of-the-art. We moreover provide new scalable algorithms that apply to additive combinations of the robust and average-case objectives. We show that these problems have many applications in machine learning (ML), including data partitioning and load balancing for distributed ML, data clustering, and image segmentation. Weempirically demonstrate the efficacy of our algorithms on real-world problems involving data partitioning for distributed optimization (of convex and deep neural network objectives), and also purely unsupervised image segmentation.

Clustering large data is a fundamental problem with a vast number of applications. Due to the increasing size of data, practitioners interested in clustering have turned to distributed computation methods. In this work, we consider the widely used k-center clustering problem and its variant used to handle noisy data, k-center with outliers. In the noise-free setting we demonstrate how a previously-proposed distributed method is actually an O(1)-approximation algorithm, which accurately explains its strong empirical performance. Additionally, in the noisy setting, we develop a novel distributed algorithm that is also an O(1)-approximation. These algorithms are highly parallel and lend themselves to virtually any distributed computing framework. We compare both empirically against the best known noisy sequential clustering methods and show that both distributed algorithms are consistently close to their sequential versions. The algorithms are all one can hope for in distributed settings: they are fast, memory efficient and they match their sequential counterparts.

In many applications, the data is of rich structure that can be represented by a hypergraph, where the data items are represented by vertices and the associations among items are represented by hyperedges. Equivalently, we are given an input bipartite graph with two types of vertices: items, and associations (which we refer to as topics). We consider the problem of partitioning the set of items into a given number of parts such that the maximum number of topics covered by a part of the partition is minimized. This is a natural clustering problem, with various applications, e.g. partitioning of a set of information objects such as documents, images, and videos, and load balancing in the context of computation platforms.In this paper, we focus on the streaming computation model for this problem, in which items arrive online one at a time and each item must be assigned irrevocably to a part of the partition at its arrival time. Motivated by scalability requirements, we focus on the class of streaming computation algorithms with memory limited to be at most linear in the number of the parts of the partition. We show that a greedy assignment strategy is able to recover a hidden co-clustering of items under a natural set of recovery conditions. We also report results of an extensive empirical evaluation, which demonstrate that this greedy strategy yields superior performance when compared with alternative approaches.

We study the problem of hierarchical clustering on planar graphs. We formulate this in terms of finding the closest ultrametric to a specified set of distances and solve it using an LP relaxation that leverages minimum cost perfect matching as a subroutine to efficiently explore the space of planar partitions. We apply our algorithm to the problem of hierarchical image segmentation.

Subspace clustering is an unsupervised learning problem that aims at grouping data points into multiple ``clusters'' so that data points in a single cluster lie approximately on a low-dimensional linear subspace. It is originally motivated by 3D motion segmentation in computer vision, but has recently been generically applied to a wide range of statistical machine learning problems, which often involves sensitive datasets about human subjects. This raises a dire concern for data privacy. In this work, we build on the framework of ``differential privacy'' and present two provably private subspace clustering algorithms. We demonstrate via both theory and experiments that one of the presented methods enjoys formal privacy and utility guarantees; the other one asymptotically preserves differential privacy while having good performance in practice. Along the course of the proof, we also obtain two new provable guarantees for the agnostic subspace clustering and the graph connectivity problem which might be of independent interests.

Spectral embedding based on the Singular Value Decomposition (SVD) is a widely used preprocessing step in many learning tasks, typically leading to dimensionality reduction by projecting onto a number of dominant singular vectors and rescaling the coordinate axes (by a predefined function of the singular value). However, the number of such vectors required to capture problem structure grows with problem size, and even partial SVD computation becomes a bottleneck. In this paper, we propose a low-complexity it compressive spectral embedding algorithm, which employs random projections and finite order polynomial expansions to compute approximations to SVD-based embedding. For an m times n matrix with T non-zeros, its time complexity is O((T+m+n)log(m+n)), and the embedding dimension is O(log(m+n)), both of which are independent of the number of singular vectors whose effect we wish to capture. To the best of our knowledge, this is the first work to circumvent this dependence on the number of singular vectors for general SVD-based embeddings. The key to sidestepping the SVD is the observation that, for downstream inference tasks such as clustering and classification, we are only interested in using the resulting embedding to evaluate pairwise similarity metrics derived from the euclidean norm, rather than capturing the effect of the underlying matrix on arbitrary vectors as a partial SVD tries to do. Our numerical results on network datasets demonstrate the efficacy of the proposed method, and motivate further exploration of its application to large-scale inference tasks.

We present a new algorithm for community detection. The algorithm uses random walks to embed the graph in a space of measures, after which a modification of $k$-means in that space is applied. The algorithm is therefore fast and easily parallelizable. We evaluate the algorithm on standard random graph benchmarks, including some overlapping community benchmarks, and find its performance to be better or at least as good as previously known algorithms. We also prove a linear time (in number of edges) guarantee for the algorithm on a $p,q$-stochastic block model with where $p \geq c\cdot N^{-\half + \epsilon}$ and $p-q \geq c' \sqrt{p N^{-\half + \epsilon} \log N}$.