The understanding of variations in genome sequences assists us in identifying people who are predisposed to common diseases, solving rare diseases, and finding the corresponding population group of the individuals from a larger population group. Although classical machine learning techniques allow researchers to identify groups (i.e. clusters) of related variables, the accuracy, and effectiveness of these methods diminish for large and high-dimensional datasets such as the whole human genome. On the other hand, deep neural network architectures (the core of deep learning) can better exploit large-scale datasets to build complex models. In this paper, we use the K-means clustering approach for scalable genomic data analysis aiming towards clustering genotypic variants at the population scale. Finally, we train a deep belief network (DBN) for predicting the geographic ethnicity. We used the genotype data from the 1000 Genomes Project, which covers the result of genome sequencing for 2504 individuals from 26 different ethnic origins and comprises 84 million variants. Our experimental results, with a focus on accuracy and scalability, show the effectiveness and superiority compared to the state-of-the-art.

Bagging and boosting are proved to be the best methods of building multiple classifiers in classification combination problems. In the area of "flat clustering" problems, it is also recognized that multi-clustering methods based on boosting provide clusterings of an improved quality. In this paper, we introduce a novel multi-clustering method for "hierarchical clusterings" based on boosting theory, which creates a more stable hierarchical clustering of a dataset. The proposed algorithm includes a boosting iteration in which a bootstrap of samples is created by weighted random sampling of elements from the original dataset. A hierarchical clustering algorithm is then applied to selected subsample to build a dendrogram which describes the hierarchy. Finally, dissimilarity description matrices of multiple dendrogram results are combined to a consensus one, using a hierarchical-clustering-combination approach. Experiments on real popular datasets show that boosted method provides superior quality solutions compared to standard hierarchical clustering methods.

A key problem in location-based modeling and forecasting lies in identifying suitable spatial and temporal resolutions. In particular, judicious spatial partitioning can play a significant role in enhancing the performance of location-based forecasting models. In this work, we investigate two widely used tessellation strategies for partitioning city space, in the context of real-time taxi demand forecasting. Our study compares (i) Geohash tessellation, and (ii) Voronoi tessellation, using two distinct taxi demand datasets, over multiple time scales. For the purpose of comparison, we employ classical time-series tools to model the spatio-temporal demand. Our study finds that the performance of each tessellation strategy is highly dependent on the city geography, spatial distribution of the data, and the time of the day, and that neither strategy is found to perform optimally across the forecast horizon. We propose a hybrid tessellation algorithm that picks the best tessellation strategy at each instant, based on their performance in the recent past. Our hybrid algorithm is a non-stationary variant of the well-known HEDGE algorithm for choosing the best advice from multiple experts. We show that the hybrid tessellation strategy performs consistently better than either of the two strategies across the data sets considered, at multiple time scales, and with different performance metrics. We achieve an average accuracy of above 80% per km^2 for both data sets considered at 60 minute aggregation levels.

The reconstruction and analyzation of high energy particle physics data is just as important as the analyzation of the structure in real world networks. In a previous study it was explored how hierarchical clustering algorithms can be combined with kt cluster algorithms to provide a more generic clusterization method. Building on that, this paper explores the possibilities to involve deep learning in the process of cluster computation, by applying reinforcement learning techniques. The result is a model, that by learning on a modest dataset of 10; 000 nodes during 70 epochs can reach 83; 77% precision in predicting the appropriate clusters.

This paper introduces a new clustering technique, called {\em dimensional clustering}, which clusters each data point by its latent {\em pointwise dimension}, which is a measure of the dimensionality of the data set local to that point. Pointwise dimension is invariant under a broad class of transformations. As a result, dimensional clustering can be usefully applied to a wide range of datasets. Concretely, we present a statistical model which estimates the pointwise dimension of a dataset around the points in that dataset using the distance of each point from its $n^{\text{th}}$ nearest neighbor. We demonstrate the applicability of our technique to the analysis of dynamical systems, images, and complex human movements.

We propose a novel method to accelerate Lloyd's algorithm for K-Means clustering. Unlike previous acceleration approaches that reduce computational cost per iterations or improve initialization, our approach is focused on reducing the number of iterations required for convergence. This is achieved by treating the assignment step and the update step of Lloyd's algorithm as a fixed-point iteration, and applying Anderson acceleration, a well-established technique for accelerating fixed-point solvers. Classical Anderson acceleration utilizes m previous iterates to find an accelerated iterate, and its performance on K-Means clustering can be sensitive to choice of m and the distribution of samples. We propose a new strategy to dynamically adjust the value of m, which achieves robust and consistent speedups across different problem instances. Our method complements existing acceleration techniques, and can be combined with them to achieve state-of-the-art performance. We perform extensive experiments to evaluate the performance of the proposed method, where it outperforms other algorithms in 106 out of 120 test cases, and the mean decrease ratio of computational time is more than 33%.

During my first project in McKinsey in 2011, I served the CEO of a bank regarding his small business strategy. I wanted to run a linear regression on the bank's data but my boss told me: "Don't do it. Artificial Intelligence is the most general-purpose technology of our time. New products and processes are being developed thanks to better vision systems, speech recognition technologies or recommendation engines based on Machine Learning. In fact, most recent advances in Artificial Intelligence have been achieved in the area of Machine Learning. Long before McKinsey, in 2004, I started my career as a mobile software developer. At that time I had to write precise instructions for every step of my code. Developing the voice recognition system of today's phones would have been tedious and error-prone back then. It would have required literally hundreds of thousands of detailed instructions to codify every single step, including identifying phonemes from sound waves, grouping them into ...

Spectral clustering is one of the most effective clustering approaches that capture hidden cluster structures in the data. However, it does not scale well to large-scale problems due to its quadratic complexity in constructing similarity graphs and computing subsequent eigendecomposition. Although a number of methods have been proposed to accelerate spectral clustering, most of them compromise considerable information loss in the original data for reducing computational bottlenecks. In this paper, we present a novel scalable spectral clustering method using Random Binning features (RB) to simultaneously accelerate both similarity graph construction and the eigendecomposition. Specifically, we implicitly approximate the graph similarity (kernel) matrix by the inner product of a large sparse feature matrix generated by RB. Then we introduce a state-of-the-art SVD solver to effectively compute eigenvectors of this large matrix for spectral clustering. Using these two building blocks, we reduce the computational cost from quadratic to linear in the number of data points while achieving similar accuracy. Our theoretical analysis shows that spectral clustering via RB converges faster to the exact spectral clustering than the standard Random Feature approximation. Extensive experiments on 8 benchmarks show that the proposed method either outperforms or matches the state-of-the-art methods in both accuracy and runtime. Moreover, our method exhibits linear scalability in both the number of data samples and the number of RB features.

This paper focuses on the unsupervised clustering of large partially observed graphs. We propose a provable randomized framework in which a clustering algorithm is applied to a graphs adjacency matrix generated from a stochastic block model. A sub-matrix is constructed using random sampling, and the low rank component is found using a convex-optimization based matrix completion algorithm. The clusters are then identified based on this low rank component using a correlation based retrieval step. Additionally, a new random node sampling algorithm is presented which significantly improves upon the performance of the clustering algorithm with unbalanced data. Given a partially observed graph with adjacency matrix A \in R^{N \times N} , the proposed approach can reduce the computational complexity from O(N^2) to O(N).

In this paper, we present a new R package COREclust dedicated to the detection of representative variables in high dimensional spaces with a potentially limited number of observations. Variable sets detection is based on an original graph clustering strategy denoted CORE-clustering algorithm that detects CORE-clusters, i.e. variable sets having a user defined size range and in which each variable is very similar to at least another variable. Representative variables are then robustely estimate as the CORE-cluster centers. This strategy is entirely coded in C++ and wrapped by R using the Rcpp package. A particular effort has been dedicated to keep its algorithmic cost reasonable so that it can be used on large datasets. After motivating our work, we will explain the CORE-clustering algorithm as well as a greedy extension of this algorithm. We will then present how to use it and results obtained on synthetic and real data.