Clustering
Top 10 Machine Learning Algorithms for Data Science
For the majority of newcomers, machine learning algorithms may seem too boring and complicated subject to be mastered. Well, to some extent, this is true. In most cases, you stumble upon a few-page description for each algorithm and yes, it's hard to find time and energy to deal with each and every detail. However, if you truly, madly, deeply want to be an ML-expert, you have to brush up your knowledge regarding it and there is no other way to be. But relax, today I will try to simplify this task and explain core principles of 10 most common algorithms in simple words (each includes a brief description, guides, and useful links).
Identifying Points of Interest and Similar Individuals from Raw GPS Data
Smartphones and portable devices have become ubiquitous and part of everyone's life. Due to the fact of its portability, these devices are perfect to record individuals' traces and life-logging generating vast amounts of data at low costs. These data is emerging as a new source for studies in human mobility patterns raising the number of research projects and techniques aiming to analyze and retrieve useful information from it. The aim of this paper is to explore GPS raw data from different individuals in a community and apply data mining algorithms to identify meaningful places in a region and describe user's profiles and its similarities. We evaluate the proposed method with a real-world dataset. The experimental results show that the steps performed to identify points of interest (POIs) and further the similarity between the users are quite satisfactory serving as a supplement for urban planning and social networks.
Optimal initialization of K-means using Particle Swarm Optimization
This paper proposes the use of an optimization algorithm, namely PSO to decide the initial centroids in K-means, to eventually get better accuracy. The vectorized notation of the optimal centroids can be thought of as entities in an optimization space, where the accuracy of K-means over a random subset of the data could act as a fitness measure. The resultant optimal vector can be used as the initial centroids for K-means.
Semi-bandit Optimization in the Dispersed Setting
Balcan, Maria-Florina, Dick, Travis, Pegden, Wesley
In this work, we study the problem of online optimization of piecewise Lipschitz functions with semi-bandit feedback. This challenging class of non-convex optimization problems often arises in algorithm selection problems for combinatorial settings, where the goal is to find the best algorithm from a large algorithm family for a specific application domain. In these settings, each evaluation of the loss functions in the optimization problem can be computationally expensive, often requiring the learner to run a combinatorial algorithm to measure its performance. Combined with the fact that small differences between similar algorithms in the family can lead to cascading changes in algorithm behavior, efficient online optimization in these settings is a challenging problem. However, we show that in many applications, evaluating the loss function for one algorithm choice can sometimes reveal the loss for a range of similar algorithms, essentially for free. We develop online optimization algorithms capable of using this kind of extra information by working in the semi-bandit feedback setting. Our algorithms achieve regret bounds that are essentially as good as algorithms under full-information feedback and are significantly more computationally efficient. We apply our semi-bandit optimization results to obtain online algorithm selection procedures for two rich families of combinatorial algorithms. We provide the first provable guarantees for online algorithm selection for clustering problems using a family of clustering algorithms containing classic linkage procedures. We also show how to select algorithms from a family of greedy knapsack algorithms with simultaneously lower computational complexity and stronger regret bounds than the best algorithm selection procedures from prior work.
SPONGE: A generalized eigenproblem for clustering signed networks
Cucuringu, Mihai, Davies, Peter, Glielmo, Aldo, Tyagi, Hemant
We introduce a principled and theoretically sound spectral method for $k$-way clustering in signed graphs, where the affinity measure between nodes takes either positive or negative values. Our approach is motivated by social balance theory, where the task of clustering aims to decompose the network into disjoint groups, such that individuals within the same group are connected by as many positive edges as possible, while individuals from different groups are connected by as many negative edges as possible. Our algorithm relies on a generalized eigenproblem formulation inspired by recent work on constrained clustering. We provide theoretical guarantees for our approach in the setting of a signed stochastic block model, by leveraging tools from matrix perturbation theory and random matrix theory. An extensive set of numerical experiments on both synthetic and real data shows that our approach compares favorably with state-of-the-art methods for signed clustering, especially for large number of clusters and sparse measurement graphs.
Global Error Bounds and Linear Convergence for Gradient-Based Algorithms for Trend Filtering and $\ell_{1}$-Convex Clustering
Ho, Nhat, Lin, Tianyi, Jordan, Michael I.
We propose a class of first-order gradient-type optimization algorithms to solve structured \textit{filtering-clustering problems}, a class of problems which include trend filtering and $\ell_1$-convex clustering as special cases. Our first main result establishes the linear convergence of deterministic gradient-type algorithms despite the extreme ill-conditioning of the difference operator matrices in these problems. This convergence result is based on a convex-concave saddle point formulation of filtering-clustering problems and the fact that the dual form of the problem admits a global error bound, a result which is based on the celebrated Hoffman bound for the distance between a point and its projection onto an optimal set. The linear convergence rate also holds for stochastic variance reduction gradient-type algorithms. Finally, we present empirical results to show that the algorithms that we analyze perform comparable to state-of-the-art algorithms for trend filtering, while presenting advantages for scalability.
A Pattern-Hierarchy Classifier for Reduced Teaching
This paper uses a branching classifier mechanism in an unsupervised scenario, to enable it to self-organise data into unknown categories. A teaching phase is then able to help the classifier to learn the true category for each input row, using a reduced number of training steps. The pattern ensembles are learned in an unsupervsised manner that use a closest-distance clustering. This is done without knowing what the actual output category is and leads to each actual category having several clusters associated with it. One measure of success is then that each of these sub-clusters is coherent, which means that every data row in the cluster belongs to the same category. The total number of clusters is also important and a teaching phase can then teach the classifier what the correct actual category is. During this phase, any classifier can also learn or infer correct classifications from some other classifier's knowledge, thereby reducing the required number of presentations. As the information is added, cross-referencing between the two structures allows it to be used more widely. With this process, a unique structure can build up that would not be possible by either method separately. The lower level is a nested ensemble of patterns created by self-organisation. The upper level is a hierarchical tree, where each end node represents a single category only, so there is a transition from mixed ensemble masses to specific categories. The structure also has relations to brain-like modelling.
Exploiting Event Log Data-Attributes in RNN Based Prediction
Hinkka, Markku, Lehto, Teemu, Heljanko, Keijo
In predictive process analytics, current and historical process data in event logs are used to predict future. E.g., to predict the next activity or how long a process will still require to complete. Recurrent neural networks (RNN) and its subclasses have been demonstrated to be well suited for creating prediction models. Thus far, event attributes have not been fully utilized in these models. The biggest challenge in exploiting them in prediction models is the potentially large amount of event attributes and attribute values. We present a novel clustering technique which allows for trade-offs between prediction accuracy and the time needed for model training and prediction. As an additional finding, we also found that this clustering method combined with having raw event attribute values provides even better prediction accuracy at the cost of additional time required for training and prediction. We also built a highly configurable test framework that can be used to efficiently evaluate different prediction approaches and parameterizations.
Multiple kernel learning for integrative consensus clustering of genomic datasets
Cabassi, Alessandra, Kirk, Paul D. W.
Diverse applications - particularly in tumour subtyping - have demonstrated the importance of integrative clustering as a means to combine information from multiple high-dimensional omics datasets. Cluster-Of-Clusters Analysis (COCA) is a popular integrative clustering method that has been widely applied in the context of tumour subtyping. However, the properties of COCA have never been systematically explored, and the robustness of this approach to the inclusion of noisy datasets, or datasets that define conflicting clustering structures, is unclear. We rigorously benchmark COCA, and present Kernel Learning Integrative Clustering (KLIC) as an alternative strategy. KLIC frames the challenge of combining clustering structures as a multiple kernel learning problem, in which different datasets each provide a weighted contribution to the final clustering. This allows the contribution of noisy datasets to be down-weighted relative to more informative datasets. We show through extensive simulation studies that KLIC is more robust than COCA in a variety of situations. R code to run KLIC and COCA can be found at https://github.com/acabassi/klic
Extended Affinity Propagation: Global Discovery and Local Insights
Khan, Rayyan Ahmad, Amjad, Rana Ali, Kleinsteuber, Martin
We propose a new clustering algorithm, Extended Affinity Propagation, based on pairwise similarities. Extended Affinity Propagation is developed by modifying Affinity Propagation such that the desirable features of Affinity Propagation, e.g., exemplars, reasonable computational complexity and no need to specify number of clusters, are preserved while the shortcomings, e.g., the lack of global structure discovery, that limit the applicability of Affinity Propagation are overcome. Extended Affinity Propagation succeeds not only in achieving this goal but can also provide various additional insights into the internal structure of the individual clusters, e.g., refined confidence values, relative cluster densities and local cluster strength in different regions of a cluster, which are valuable for an analyst. We briefly discuss how these insights can help in easily tuning the hyperparameters. We also illustrate these desirable features and the performance of Extended Affinity Propagation on various synthetic and real world datasets.