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Na\"iveRole: Author-Contribution Extraction and Parsing from Biomedical Manuscripts

arXiv.org Machine Learning

Information about the contributions of individual authors to scientific publications is important for assessing authors' achievements. Some biomedical publications have a short section that describes authors' roles and contributions. It is usually written in natural language and hence author contributions cannot be trivially extracted in a machine-readable format. In this paper, we present 1) A statistical analysis of roles in author contributions sections, and 2) Na\"iveRole, a novel approach to extract structured authors' roles from author contribution sections. For the first part, we used co-clustering techniques, as well as Open Information Extraction, to semi-automatically discover the popular roles within a corpus of 2,000 contributions sections from PubMed Central. The discovered roles were used to automatically build a training set for Na\"iveRole, our role extractor approach, based on Na\"ive Bayes. Na\"iveRole extracts roles with a micro-averaged precision of 0.68, recall of 0.48 and F1 of 0.57. It is, to the best of our knowledge, the first attempt to automatically extract author roles from research papers. This paper is an extended version of a previous poster published at JCDL 2018.


Machine Learning Full Course - Learn Machine Learning 10 Hours Machine Learning Tutorial Edureka

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This Machine Learning Tutorial is ideal for both beginners as well as professionals who want to master Machine Learning Algorithms. Below are the topics covered in this Machine Learning Tutorial for Beginners video: 2:47 What is Machine Learning? Please share it in the comment section below and our experts will answer it for you. For more information, please write back to us at sales@edureka.in or call us at IND: 9606058406 / US: 18338555775 (toll-free).


What is Machine Learning? Types of Machine Learning Algorithms

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Machine learning is the concept of using the different sample data model to create a mathematical model to understand the specific task. As machine learning deals with business problems the other name for machine learning is predictive analysis. The Supervised machine learning algorithm, unsupervised algorithm, Semi-supervised algorithm, and reinforcement machine learning algorithm are the algorithms of machine learning which are used to make the computers to learn by experience. There are UG courses, PG courses and online courses for cloud computing. Some of the courses are offered with no eligibility criteria whereas some degree programs with cloud computing demand for entrance exams like JEE Main, JEE Advanced, VITEEE, IPU CET, SRMJEEE, and MHT CET. Machine learning and Artificial Intelligence are two different concepts used for training machines and learning data from machines with algorithms. Machine learning is one of the applications and a subset of artificial intelligence. An automated learning system with the experience or patterns of examples initiates the process of automated predictions.


Calibrated model-based evidential clustering using bootstrapping

arXiv.org Machine Learning

Evidential clustering is an approach to clustering in which cluster-membership uncertainty is represented by a collection of Dempster-Shafer mass functions forming an evidential partition. In this paper, we propose to construct these mass functions by bootstrapping finite mixture models. In the first step, we compute bootstrap percentile confidence intervals for all pairwise probabilities (the probabilities for any two objects to belong to the same class). We then construct an evidential partition such that the pairwise belief and plausibility degrees approximate the bounds of the confidence intervals. This evidential partition is calibrated, in the sense that the pairwise belief-plausibility intervals contain the true probabilities "most of the time", i.e., with a probability close to the defined confidence level. This frequentist property is verified by simulation, and the practical applicability of the method is demonstrated using several real datasets.


Integrative Generalized Convex Clustering Optimization and Feature Selection for Mixed Multi-View Data

arXiv.org Machine Learning

In mixed multi-view data, multiple sets of diverse features are measured on the same set of samples. By integrating all available data sources, we seek to discover common group structure among the samples that may be hidden in individualistic cluster analyses of a single data-view. While several techniques for such integrative clustering have been explored, we propose and develop a convex formalization that will inherit the strong statistical, mathematical and empirical properties of increasingly popular convex clustering methods. Specifically, our Integrative Generalized Convex Clustering Optimization (iGecco) method employs different convex distances, losses, or divergences for each of the different data views with a joint convex fusion penalty that leads to common groups. Additionally, integrating mixed multi-view data is often challenging when each data source is high-dimensional. To perform feature selection in such scenarios, we develop an adaptive shifted group-lasso penalty that selects features by shrinking them towards their loss-specific centers. Our so-called iGecco+ approach selects features from each data-view that are best for determining the groups, often leading to improved integrative clustering. To fit our model, we develop a new type of generalized multi-block ADMM algorithm using sub-problem approximations that more efficiently fits our model for big data sets. Through a series of numerical experiments and real data examples on text mining and genomics, we show that iGecco+ achieves superior empirical performance for high-dimensional mixed multi-view data.


Graph-based Multi-view Binary Learning for Image Clustering

arXiv.org Machine Learning

Graph-based Multi-view Binary Learning for Image Clustering Guangqi Jiang a, Huibing Wang a, Jinjia Peng a, Dongyan Chen a, Xianping Fu a,b, a College of Information and Science Technology, Dalian Maritime University, Danlian, Liaoning, 116021, China b Pengcheng Laboratory, Shenzhen, Guangdong, 518055, ChinaAbstract Hashing techniques, also known as binary code learning, have recently gained increasing attention in large-scale data analysis and storage. Generally, most existing hash clustering methods are single-view ones, which lack complete structure or complementary information from multiple views. For cluster tasks, abundant prior researches mainly focus on learning discrete hash code while few works take original data structure into consideration. To address these problems, we propose a novel binary code algorithm for clustering, which adopts graph embedding to preserve the original data structure, called (Graph-based Multi-view Binary Learning) GMBL in this paper. GMBL mainly focuses on encoding the information of multiple views into a compact binary code, which explores complementary information from multiple views. In particular, in order to maintain the graph-based structure of the original data, we adopt a Laplacian matrix to preserve the local linear relationship of the data and map it to the Hamming space. Considering different views have distinctive contributions to the final clustering results, GMBL adopts a strategy of automatically assign weights for each view to better guide the clustering. Finally, An alternating iterative optimization method is adopted to optimize discrete binary codes directly instead of relaxing the binary constraint in two steps. Experiments on five public datasets demonstrate the superiority of our proposed method compared with previous Corresponding author: Xianping Fu Preprint submitted to Journal of L A T EX Templates December 12, 2019 arXiv:1912.05159v1 Introduction With the development of computer vision applications, we have witnessed that hash technology has become an indispensable step in the processing of large data [1] [2]. In dealing with data analysis, organization, and storage, etc., there is an imminent need to use the effective hash code to process data clustering from big databases. Besides, most existed digital devices mainly based on binary code, which can effectively save computing time and storage space.


Kernel-estimated Nonparametric Overlap-Based Syncytial Clustering

arXiv.org Machine Learning

Commonly-used clustering algorithms usually find ellipsoidal, spherical or other regular-structured clusters, but are more challenged when the underlying groups lack formal structure or definition. Syncytial clustering is the name that we introduce for methods that merge groups obtained from standard clustering algorithms in order to reveal complex group structure in the data. Here, we develop a distribution-free fully-automated syncytial clustering algorithm that can be used with $k$-means and other algorithms. Our approach computes the cumulative distribution function of the normed residuals from an appropriately fit $k$-groups model and calculates the nonparametric overlap between each pair of clusters. Groups with high pairwise overlap are merged as long as the generalized overlap decreases. Our methodology is always a top performer in identifying groups with regular and irregular structures in several datasets and can be applied to datasets with scatter or incomplete records. The approach is also used to identify the distinct kinds of gamma ray bursts in the Burst and Transient Source Experiment 4Br catalog and the distinct kinds of activation in a functional Magnetic Resonance Imaging study.


Unsupervised Feature Selection based on Adaptive Similarity Learning and Subspace Clustering

arXiv.org Machine Learning

Unsupervised Feature Selection based on Adaptive Similarity Learning and Subspace Clustering Mohsen Ghassemi Parsa a, Hadi Zare a,, Mehdi Ghatee b a Faculty of New Sciences and Technologies, University of Tehran, Iran b Department of Computer Science, Amirkabir University of Technology, IranAbstract Feature selection methods have an important role on the readability of data and the reduction of complexity of learning algorithms. In recent years, a variety of efforts are investigated on feature selection problems based on unsupervised viewpoint due to the laborious labeling task on large datasets. In this paper, we propose a novel approach on unsupervised feature selection initiated from the subspace clustering to preserve the similarities by representation learning of low dimensional subspaces among the samples. A self-expressive model is employed to implicitly learn the cluster similarities in an adaptive manner. The proposed method not only maintains the sample similarities through subspace clustering, but it also captures the discriminative information based on a regularized regression model. In line with the convergence analysis of the proposed method, the experimental results on benchmark datasets demonstrate the effectiveness of our approach as compared with the state of the art methods.


Transformed Subspace Clustering

arXiv.org Machine Learning

Subspace clustering assumes that the data is separable into separate subspaces. Such a simple assumption, does not always hold. We assume that, even if the raw data is not separable into subspaces, one can learn a representation ( transform coef-fi cients) such that the learnt representation is separable into subspaces. To achieve the intended goal, we embed subspace clustering techniques (locally linear manifold clustering, sparse subspace clustering and low rank representation) into transform learn ing. The entire formulation is jointly learnt; giving rise to a new class of methods called transformed subspace clustering (TSC). In order to account for non - linearity, ker-nelized extensions of TSC are also proposed. To test the performanc e of the propose d techniques, benchmarking is performed on image clustering and document clustering datasets. Comparison with state - of - the - art clustering techniques shows that our formulation improves upon them.


A time resolved clustering method revealing longterm structures and their short-term internal dynamics

arXiv.org Machine Learning

The last decades have not only been characterized by an explosive growth of data, but also an increasing appreciation of data as a valuable resource. It's value comes with the ability to extract meaningful patterns that are of economic, societal or scientific relevance. A particular challenge is to identify patterns across time, including patterns that might only become apparent when the temporal dimension is taken into account. Here, we present a novel method that aims to achieve this by detecting dynamic clusters, i.e. structural elements that can be present over prolonged durations. It is based on an adaptive identification of majority overlaps between groups at different time points and allows the accommodation of transient decompositions in otherwise persistent dynamic clusters. As such, our method enables the detection of persistent structural elements with internal dynamics and can be applied to any classifiable data, ranging from social contact networks to arbitrary sets of time stamped feature vectors. It provides a unique tool to study systems with non-trivial temporal dynamics with a broad applicability to scientific, societal and economic data.