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 Clustering


Robust M-Estimation Based Bayesian Cluster Enumeration for Real Elliptically Symmetric Distributions

arXiv.org Machine Learning

Robustly determining the optimal number of clusters in a data set is an essential factor in a wide range of applications. Cluster enumeration becomes challenging when the true underlying structure in the observed data is corrupted by heavy-tailed noise and outliers. Recently, Bayesian cluster enumeration criteria have been derived by formulating cluster enumeration as maximization of the posterior probability of candidate models. This article generalizes robust Bayesian cluster enumeration so that it can be used with any arbitrary Real Elliptically Symmetric (RES) distributed mixture model. Our framework also covers the case of M-estimators that allow for mixture models, which are decoupled from a specific probability distribution. Examples of Huber's and Tukey's M-estimators are discussed. We derive a robust criterion for data sets with finite sample size, and also provide an asymptotic approximation to reduce the computational cost at large sample sizes. The algorithms are applied to simulated and real-world data sets, including radar-based person identification, and show a significant robustness improvement in comparison to existing methods.


Machine Learning Guide for Everyone: Introduction

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In reality, we have to work with the datasets which have a high number of features, in other words, high dimensionality. So this increases the computation time and decreases the performance of the model. So to deal with the issue we use Dimensionality Reduction. It works by finding correlations between features and removing redundant information and then assembling specific features into high-level ones. It also helps in removing the noise from the data. It is used in- Recommender Systems, Fake image analysis, etc.


Graph Clustering with Graph Neural Networks

arXiv.org Machine Learning

Graph Neural Networks (GNNs) have achieved state-of-the-art results on many graph analysis tasks such as node classification and link prediction. However, important unsupervised problems on graphs, such as graph clustering, have proved more resistant to advances in GNNs. In this paper, we study unsupervised training of GNN pooling in terms of their clustering capabilities. We start by drawing a connection between graph clustering and graph pooling: intuitively, a good graph clustering is what one would expect from a GNN pooling layer. Counterintuitively, we show that this is not true for state-of-the-art pooling methods, such as MinCut pooling. To address these deficiencies, we introduce Deep Modularity Networks (DMoN), an unsupervised pooling method inspired by the modularity measure of clustering quality, and show how it tackles recovery of the challenging clustering structure of real-world graphs. In order to clarify the regimes where existing methods fail, we carefully design a set of experiments on synthetic data which show that DMoN is able to jointly leverage the signal from the graph structure and node attributes. Similarly, on real-world data, we show that DMoN produces high quality clusters which correlate strongly with ground truth labels, achieving state-of-the-art results.


Real Elliptically Skewed Distributions and Their Application to Robust Cluster Analysis

arXiv.org Machine Learning

This article proposes a new class of Real Elliptically Skewed (RESK) distributions and associated clustering algorithms that allow for integrating robustness and skewness into a single unified cluster analysis framework. Non-symmetrically distributed and heavy-tailed data clusters have been reported in a variety of real-world applications. Robustness is essential because a few outlying observations can severely obscure the cluster structure. The RESK distributions are a generalization of the Real Elliptically Symmetric (RES) distributions. To estimate the cluster parameters and memberships, we derive an expectation maximization (EM) algorithm for arbitrary RESK distributions. Special attention is given to a new robust skew-Huber M-estimator, which is also the maximum likelihood estimator (MLE) for the skew-Huber distribution that belongs to the RESK class. Numerical experiments on simulated and real-world data confirm the usefulness of the proposed methods for skewed and heavy-tailed data sets.


The Anatomy of K-means Clustering

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Let’s say you want to classify hundreds (or thousands) of documents based on their content and topics, or you wish to group together different images for some reason. Or what’s even more, let’s think you have that same data already classified but you want to challenge that labeling. You want to know if that data categorization makes sense or not, or can be improved.


Laplacian Regularized Few-Shot Learning

arXiv.org Machine Learning

We propose a transductive Laplacian-regularized inference for few-shot tasks. Given any feature embedding learned from the base classes, we minimize a quadratic binary-assignment function containing two terms: (1) a unary term assigning query samples to the nearest class prototype, and (2) a pairwise Laplacian term encouraging nearby query samples to have consistent label assignments. Our transductive inference does not re-train the base model, and can be viewed as a graph clustering of the query set, subject to supervision constraints from the support set. We derive a computationally efficient bound optimizer of a relaxation of our function, which computes independent (parallel) updates for each query sample, while guaranteeing convergence. Following a simple cross-entropy training on the base classes, and without complex meta-learning strategies, we conducted comprehensive experiments over five few-shot learning benchmarks. Our LaplacianShot consistently outperforms state-of-the-art methods by significant margins across different models, settings, and data sets. Furthermore, our transductive inference is very fast, with computational times that are close to inductive inference, and can be used for large-scale few-shot tasks.


Consistency of Anchor-based Spectral Clustering

arXiv.org Machine Learning

Anchor-based techniques reduce the computational complexity of spectral clustering algorithms. Although empirical tests have shown promising results, there is currently a lack of theoretical support for the anchoring approach. We define a specific anchor-based algorithm and show that it is amenable to rigorous analysis, as well as being effective in practice. We establish the theoretical consistency of the method in an asymptotic setting where data is sampled from an underlying continuous probability distribution. In particular, we provide sharp asymptotic conditions for the algorithm parameters which ensure that the anchor-based method can recover with high probability disjoint clusters that are mutually separated by a positive distance. We illustrate the performance of the algorithm on synthetic data and explain how the theoretical convergence analysis can be used to inform the practical choice of parameter scalings. We also test the accuracy and efficiency of the algorithm on two large scale real data sets. We find that the algorithm offers clear advantages over standard spectral clustering. We also find that it is competitive with the state-of-the-art LSC method of Chen and Cai (Twenty-Fifth AAAI Conference on Artificial Intelligence, 2011), while having the added benefit of a consistency guarantee.


Smile-GANs: Semi-supervised clustering via GANs for dissecting brain disease heterogeneity from medical images

arXiv.org Machine Learning

Machine learning methods applied to complex biomedical data has enabled the construction of disease signatures of diagnostic/prognostic value. However, less attention has been given to understanding disease heterogeneity. Semi-supervised clustering methods can address this problem by estimating multiple transformations from a (e.g. healthy) control (CN) group to a patient (PT) group, seeking to capture the heterogeneity of underlying pathlogic processes. Herein, we propose a novel method, Smile-GANs (SeMi-supervIsed cLustEring via GANs), for semi-supervised clustering, and apply it to brain MRI scans. Smile-GANs first learns multiple distinct mappings by generating PT from CN, with each mapping characterizing one relatively distinct pathological pattern. Moreover, a clustering model is trained interactively with mapping functions to assign PT into corresponding subtype memberships. Using relaxed assumptions on PT/CN data distribution and imposing mapping non-linearity, Smile-GANs captures heterogeneous differences in distribution between the CN and PT domains. We first validate Smile-GANs using simulated data, subsequently on real data, by demonstrating its potential in characterizing heterogeneity in Alzheimer's Disease (AD) and its prodromal phases. The model was first trained using baseline MRIs from the ADNI2 database and then applied to longitudinal data from ADNI1 and BLSA. Four robust subtypes with distinct neuroanatomical patterns were discovered: 1) normal brain, 2) diffuse atrophy atypical of AD, 3) focal medial temporal lobe atrophy, 4) typical-AD. Further longitudinal analyses discover two distinct progressive pathways from prodromal to full AD: i) subtypes 1 - 2 - 4, and ii) subtypes 1 - 3 - 4. Although demonstrated on an important biomedical problem, Smile-GANs is general and can find application in many biomedical and other domains.


Revisiting Agglomerative Clustering

arXiv.org Machine Learning

An important issue in clustering concerns the avoidance of false positives while searching for clusters. This work addressed this problem considering agglomerative methods, namely single, average, median, complete, centroid and Ward's approaches applied to unimodal and bimodal datasets obeying uniform, gaussian, exponential and power-law distributions. A model of clusters was also adopted, involving a higher density nucleus surrounded by a transition, followed by outliers. This paved the way to defining an objective means for identifying the clusters from dendrograms. The adopted model also allowed the relevance of the clusters to be quantified in terms of the height of their subtrees. The obtained results include the verification that many methods detect two clusters in unimodal data. The single-linkage method was found to be more resilient to false positives. Also, several methods detected clusters not corresponding directly to the nucleus. The possibility of identifying the type of distribution was also investigated.


Outlier Detection -- Theory, Visualizations, and Code

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Outlier Detection is also known as anomaly detection, noise detection, deviation detection, or exception mining. There is no universally accepted definition. An early definition by (Grubbs, 1969) is: An outlying observation, or outlier, is one that appears to deviate markedly from other members of the sample in which it occurs. An observation which appears to be inconsistent with the remainder of that set of data. A list of applications that utilize outlier detection according to (Hodge, V.J. and Austin, J., 2014) is: This is analogous to unsupervised clustering.