We consider the problem of estimating overlapping community memberships in a network, where each node can belong to multiple communities. More than a few communities per node are difficult to both estimate and interpret, so we focus on sparse node membership vectors. Our algorithm is based on sparse principal subspace estimation with iterative thresholding. The method is computationally efficient, with a computational cost equivalent to estimating the leading eigenvectors of the adjacency matrix, and does not require an additional clustering step, unlike spectral clustering methods. We show that a fixed point of the algorithm corresponds to correct node memberships under a version of the stochastic block model. The methods are evaluated empirically on simulated and real-world networks, showing good statistical performance and computational efficiency.

In this paper, we propose a novel framework for Deep Clustering and Representation Learning (DCRL) that preserves the geometric structure of data. In the proposed DCRL framework, manifold clustering is done in the latent space guided by a clustering loss. To overcome the problem that clustering-oriented losses may deteriorate the geometric structure of embeddings in the latent space, an isometric loss is proposed for preserving intra-manifold structure locally and a ranking loss for inter-manifold structure globally. Experimental results on various datasets show that the DCRL framework leads to performances comparable to current state-of-the-art deep clustering algorithms, yet exhibits superior performance for downstream tasks. Our results also demonstrate the importance and effectiveness of the proposed losses in preserving geometric structure in terms of visualization and performance metrics. Clustering, a fundamental tool for data analysis and visualization, has been an essential research topic in data science and machine learning. Conventional clustering algorithms such as K -Means (MacQueen, 1965), Gaussian Mixture Models (GMM) (Bishop, 2006), and spectral clustering (Shi & Malik, 2000) perform clustering based on distance or similarity. However, handcrafted distance or similarity measures are rarely reliable for large-scale high-dimensional data, making it increasingly challenging to achieve effective clustering.

We all are well aware of the capability of python libraries in machine learning, but you can also manipulate the image properties with the help of the matplotlib library. We will see how we can easily transform and manipulate image properties. We have imported the required libraries, Also cv2 is used to read and manipulate the image. Make sure that the image you want to manipulate lies in the same folder. As we know, image properties are generally in 3-dimension, it is very clear with the output we got (350, 525, 3).

Clustering genotypes based upon their phenotypic characteristics is used to obtain diverse sets of parents that are useful in their breeding programs. The Hierarchical Clustering (HC) algorithm is the current standard in clustering of phenotypic data. This algorithm suffers from low accuracy and high computational complexity issues. To address the accuracy challenge, we propose the use of Spectral Clustering (SC) algorithm. To make the algorithm computationally cheap, we propose using sampling, specifically, Pivotal Sampling that is probability based. Since application of samplings to phenotypic data has not been explored much, for effective comparison, another sampling technique called Vector Quantization (VQ) is adapted for this data as well. VQ has recently given promising results for genome data. The novelty of our SC with Pivotal Sampling algorithm is in constructing the crucial similarity matrix for the clustering algorithm and defining probabilities for the sampling technique. Although our algorithm can be applied to any plant genotypes, we test it on the phenotypic data obtained from about 2400 Soybean genotypes. SC with Pivotal Sampling achieves substantially more accuracy (in terms of Silhouette Values) than all the other proposed competitive clustering with sampling algorithms (i.e. SC with VQ, HC with Pivotal Sampling, and HC with VQ). The complexities of our SC with Pivotal Sampling algorithm and these three variants are almost same because of the involved sampling. In addition to this, SC with Pivotal Sampling outperforms the standard HC algorithm in both accuracy and computational complexity. We experimentally show that we are up to 45% more accurate than HC in terms of clustering accuracy. The computational complexity of our algorithm is more than a magnitude lesser than HC.

Scalable kernel methods, including kernel ridge regression, often rely on low-rank matrix approximations using the Nystrom method, which involves selecting landmark points from large data sets. The existing approaches to selecting landmarks are typically computationally demanding as they require manipulating and performing computations with large matrices in the input or feature space. In this paper, our contribution is twofold. The first contribution is to propose a novel landmark selection method that promotes diversity using an efficient two-step approach. Our landmark selection technique follows a coarse to fine strategy, where the first step computes importance scores with a single pass over the whole data. The second step performs K-means clustering on the constructed coreset to use the obtained centroids as landmarks. Hence, the introduced method provides tunable trade-offs between accuracy and efficiency. Our second contribution is to investigate the performance of several landmark selection techniques using a novel application of kernel methods for predicting structural responses due to earthquake load and material uncertainties. Our experiments exhibit the merits of our proposed landmark selection scheme against baselines.

This is a comprehensive tutorial on using the Spark distributed machine learning framework to build a scalable ML data pipeline. I will cover the basic machine learning algorithms implemented in Spark MLlib library and through this tutorial, I will use the PySpark in python environment. Machine learning is getting popular in solving real-world problems in almost every business domain. It helps solve the problems using the data which is often unstructured, noisy, and in huge size. With the increase in data sizes and various sources of data, solving machine learning problems using standard techniques pose a big challenge.

One of the central goals in precision health is the understanding and interpretation of high-dimensional biological data to identify genes and markers associated with disease initiation, development, and outcomes. Though significant effort has been committed to harness gene expression data for multiple analyses while accounting for time-to-event modeling by including survival times, many traditional analyses have focused separately on non-negative matrix factorization (NMF) of the gene expression data matrix and survival regression with Cox proportional hazards model. In this work, Cox proportional hazards regression is integrated with NMF by imposing survival constraints. This is accomplished by jointly optimizing the Frobenius norm and partial log likelihood for events such as death or relapse. Simulation results on synthetic data demonstrated the superiority of the proposed method, when compared to other algorithms, in finding survival associated gene clusters. In addition, using human cancer gene expression data, the proposed technique can unravel critical clusters of cancer genes. The discovered gene clusters reflect rich biological implications and can help identify survival-related biomarkers. Towards the goal of precision health and cancer treatments, the proposed algorithm can help understand and interpret high-dimensional heterogeneous genomics data with accurate identification of survival-associated gene clusters.

Clustering Algorithms are essential aspects of Data Science and every data scientist must be aware of its concepts. Before discussing the top 5 clustering algorithms, we shall briefly see what clustering is and how it helps in Data Science. Clustering is a Machine Learning technique involving the grouping of data points. It is an unsupervised learning method and a famous technique for statistical data analysis. For a given set of data points, you can use clustering algorithms to classify these into specific groups.

Clustering is part of an unsupervised algorithm in machine learning. Unlike supervised algorithms like linear regression, logistic regression, etc, clustering works with unlabeled data or data without target variables. The task of clustering is to group similar data points. Clustering comes under the data mining topic and there is a lot of research going on in this field and there exist many clustering algorithms. The following are the main types of clustering algorithms.

Clustering is one of the most fundamental tools in the artificial intelligence area, particularly in the pattern recognition and learning theory. In this paper, we propose a simple, but novel approach for variance-based k-clustering tasks, included in which is the widely known k-means clustering. The proposed approach picks a sampling subset from the given dataset and makes decisions based on the data information in the subset only. With certain assumptions, the resulting clustering is provably good to estimate the optimum of the variance-based objective with high probability. Extensive experiments on synthetic datasets and real-world datasets show that to obtain competitive results compared with k-means method (Llyod 1982) and k-means++ method (Arthur and Vassilvitskii 2007), we only need 7% information of the dataset. If we have up to 15% information of the dataset, then our algorithm outperforms both the k-means method and k-means++ method in at least 80% of the clustering tasks, in terms of the quality of clustering. Also, an extended algorithm based on the same idea guarantees a balanced k-clustering result.