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 Clustering


Backdoor Cleaning without External Guidance in MLLM Fine-tuning

Neural Information Processing Systems

Multimodal Large Language Models (MLLMs) are increasingly deployed in finetuning-as-a-service (FTaaS) settings, where user-submitted datasets adapt generalpurpose models to downstream tasks. This flexibility, however, introduces serious security risks, as malicious fine-tuning can implant backdoors into MLLMs with minimal effort. In this paper, we observe that backdoor triggers systematically disrupt cross-modal processing by causing abnormal attention concentration on non-semantic regions--a phenomenon we term attention collapse. Based on this insight, we propose Believe Your Eyes (BYE), a data filtering framework that leverages attention entropy patterns as self-supervised signals to identify and filter backdoor samples. BYE operates via a three-stage pipeline: (1) extracting attention maps using the fine-tuned model, (2) computing entropy scores and profiling sensitive layers via bimodal separation, and (3) performing unsupervised clustering to remove suspicious samples. Unlike prior defenses, BYE requires no clean supervision, auxiliary labels, or model modifications. Extensive experiments across various datasets, models, and diverse trigger types validate BYE's effectiveness: it achieves near-zero attack success rates while maintaining clean-task performance, offering a robust and generalizable solution against backdoor threats in MLLMs.


OmniFC: Rethinking Federated Clustering via Lossless and Secure Distance Reconstruction

Neural Information Processing Systems

Federated clustering (FC) aims to discover global cluster structures across decentralized clients without sharing raw data, making privacy preservation a fundamental requirement. There are two critical challenges: (1) privacy leakage during collaboration, and (2) robustness degradation due to aggregation of proxy information from non-independent and identically distributed (Non-IID) local data, leading to inaccurate or inconsistent global clustering. Existing solutions typically rely on model-specific local proxies, which are sensitive to data heterogeneity and inherit inductive biases from their centralized counterparts, thus limiting robustness and generality. We propose Omni Federated Clustering (OmniFC), a unified and modelagnostic framework. Leveraging Lagrange coded computing, our method enables clients to share only encoded data, allowing exact reconstruction of the global distance matrix--a fundamental representation of sample relationships--without leaking private information, even under client collusion. This construction is naturally resilient to Non-IID data distributions. This approach decouples FC from model-specific proxies, providing a unified extension mechanism applicable to diverse centralized clustering methods. Theoretical analysis confirms both reconstruction fidelity and privacy guarantees, while comprehensive experiments demonstrate OmniFC's superior robustness, effectiveness, and generality across various benchmarks compared to state-of-the-art methods.


DGCBench: ADeep Graph Clustering Benchmark

Neural Information Processing Systems

Deep graph clustering (DGC) aims to partition graph nodes into distinct clusters in an unsupervised manner. Despite rapid advancements in this field, DGC remains inherently challenging due to the absence of ground-truth, which complicates the design of effective algorithms and impedes the establishment of standardized benchmarks. The lack of unified datasets, evaluation protocols, and metrics further exacerbates these challenges, making it difficult to systematically assess and compare DGC methods. To address these limitations, we introduce DGCBench, the first comprehensive and unified benchmark for DGC methods. It evaluates 12 state-ofthe-art DGC methods across 12 datasets from diverse domains and scales, spanning 6 critical dimensions: discriminability, effectiveness, scalability, efficiency, stability, and robustness. Additionally, we develop PyDGC, an open-source Python library that standardizes the DGC training and evaluation paradigm. Through systematic experiments, we reveal persistent limitations in existing methods, specifically regarding the homophily bottleneck, training instability, vulnerability to perturbations, efficiency plateau, scalability challenges, and poor discriminability, thereby offering actionable insights for future research. We hope that DGCBench, PyDGC, and our analyses will collectively accelerate the progress in the DGC community.


Variational Supervised Contrastive Learning

Neural Information Processing Systems

Contrastive learning has proven to be highly efficient and adaptable in shaping representation spaces across diverse modalities by pulling similar samples together and pushing dissimilar ones apart. However, two key limitations persist: (1) Without explicit regulation of the embedding distribution, semantically related instances can inadvertently be pushed apart unless complementary signals guide pair selection, and (2) excessive reliance on large in-batch negatives and tailored augmentations hinders generalization. To address these limitations, we propose Variational Supervised Contrastive Learning (VarCon), which reformulates supervised contrastive learning as variational inference over latent class variables and maximizes a posterior-weighted evidence lower bound (ELBO) that replaces exhaustive pair-wise comparisons for efficient class-aware matching and grants fine-grained control over intra-class dispersion in the embedding space. Trained exclusively on image data, our experiments on CIFAR-10, CIFAR-100, ImageNet100, and ImageNet-1K show that VarCon (1) achieves state-of-the-art performance for contrastive learning frameworks, reaching 79.36% Top-1 accuracy on ImageNet1K and 78.29% on CIFAR-100 with a ResNet-50 encoder while converging in just 200 epochs; (2) yields substantially clearer decision boundaries and semantic organization in the embedding space, as evidenced by KNN classification, hierarchical clustering results, and transfer-learning assessments; and (3) demonstrates superior performance in few-shot learning than supervised baseline and superior robustness across various augmentation strategies.


You Can Trust Your Clustering Model: A Parameter-free Self-Boosting Plug-in for Deep Clustering

Neural Information Processing Systems

Recent deep clustering models have produced impressive clustering performance. However, a common issue with existing methods is the disparity between global and local feature structures. While local structures typically show strong consistency and compactness within class samples, global features often present intertwined boundaries and poorly separated clusters. Motivated by this observation, we propose DCBoost, a parameter-free plug-in designed to enhance the global feature structures of current deep clustering models. By harnessing reliable local structural cues, our method aims to elevate clustering performance effectively. Specifically, we first identify high-confidence samples through adaptive k-nearest neighborsbased consistency filtering, aiming to select a sufficient number of samples with high label reliability to serve as trustworthy anchors for self-supervision. Subsequently, these samples are utilized to compute a discriminative loss, which promotes both intra-class compactness and inter-class separability, to guide network optimization. Extensive experiments across various benchmark datasets showcase that our DCBoost significantly improves the clustering performance of diverse existing deep clustering models. Notably, our method improves the performance of current state-of-the-art baselines (e.g., ProPos) by more than 3% on average and amplifies the silhouette coefficient by over 7 .


Cluster LOCO: Feature Importance For Interpreting Clusters

arXiv.org Machine Learning

Clustering is widely used for exploratory analysis and scientific discovery, driving insights from market segmentation to biological data analysis, but its outputs can be difficult to interpret, audit, and reproduce as modern datasets become increasingly large and complex. Reliable use of clustering requires understanding which features drive the discovered structure, yet feature-level explanations for clustering remain scarce compared with methods in supervised learning. Furthermore, existing clustering feature importance scores are often tied to specific algorithms and data assumptions. To address these challenges, we propose Cluster LOCO (Leave-One-Covariate-Out), a family of model-agnostic feature importance scores for clustering. Cluster LOCO is built on feature occlusion and clustering generalizability, defined as whether cluster labels learned on one subset of the data can be accurately predicted on held-out samples. For any chosen clustering algorithm, Cluster LOCO quantifies a feature's importance by measuring how much its removal degrades generalizability. We first introduce Cluster LOCO-Split, which relies on data splitting, and then extend it to Cluster LOCO-MP, a minipatch ensemble-based version designed for large-scale data. Across synthetic simulations and an application to cell-type discovery in single-cell transcriptomics, we show that Cluster LOCO more reliably recovers informative features than existing clustering feature importance methods.


An Efficient Local Search Approach for Polarized Community Discovery in Signed Networks

Neural Information Processing Systems

Signed networks, where edges are labeled as positive or negative to represent friendly or antagonistic interactions, provide a natural framework for analyzing polarization, trust, and conflict in social systems. Detecting meaningful group structures in such networks is crucial for understanding online discourse, political divisions, and trust dynamics. A key challenge is to identify communities that are internally cohesive and externally antagonistic, while allowing for neutral or unaligned vertices. In this paper, we propose a method for identifying k polarized communities that addresses a major limitation of prior methods: their tendency to produce highly size-imbalanced solutions. We introduce a novel optimization objective that avoids such imbalance. In addition, it is well known that approximation algorithms based on local search are highly effective for clustering signed networks when neutral vertices are not allowed. We build on this idea and design the first local search algorithm that extends to the setting with neutral vertices while scaling to large networks. By connecting our approach to block-coordinate Frank-Wolfe optimization, we prove a linear convergence rate, enabled by the structure of our objective. Experiments on real-world and synthetic datasets demonstrate that our method consistently outperforms state-of-the-art baselines in solution quality, while remaining competitive in computational efficiency.


Deep Taxonomic Networks for Unsupervised Hierarchical Prototype Discovery

Neural Information Processing Systems

Inspired by the human ability to learn and organize knowledge into hierarchical taxonomies with prototypes, this paper addresses key limitations in current deep hierarchical clustering methods. Existing methods often tie the structure to the number of classes and underutilize the rich prototype information available at intermediate hierarchical levels. We introduce deep taxonomic networks, a novel deep latent variable approach designed to bridge these gaps. Our method optimizes a large latent taxonomic hierarchy, specifically a complete binary tree structured mixture-of-Gaussian prior within a variational inference framework, to automatically discover taxonomic structures and associated prototype clusters directly from unlabeled data without assuming true label sizes. We analytically show that optimizing the ELBO of our method encourages the discovery of hierarchical relationships among prototypes. Empirically, our learned models demonstrate strong hierarchical clustering performance, outperforming baselines across diverse image classification datasets using our novel evaluation mechanism that leverages prototype clusters discovered at all hierarchical levels. Qualitative results further reveal that deep taxonomic networks discover rich and interpretable hierarchical taxonomies, capturing both coarse-grained semantic categories and fine-grained visual distinctions.


Optimal Graph Clustering without Edge Density Signals

Neural Information Processing Systems

This paper establishes the theoretical limits of graph clustering under the Popularity-Adjusted Block Model (PABM), addressing limitations of existing models. In contrast to the Stochastic Block Model (SBM), which assumes uniform vertex degrees, and to the Degree-Corrected Block Model (DCBM), which applies uniform degree corrections across clusters, PABM introduces separate popularity parameters for intra-and inter-cluster connections. Our main contribution is the characterization of the optimal error rate for clustering under PABM, which provides novel insights on clustering hardness: we demonstrate that unlike SBM and DCBM, cluster recovery remains possible in PABM even when traditional edge-density signals vanish, provided intra-and inter-cluster popularity coefficients differ. This highlights a dimension of degree heterogeneity captured by PABM but overlooked by DCBM: local differences in connectivity patterns can enhance cluster separability independently of global edge densities. Finally, because PABM exhibits a richer structure, its expected adjacency matrix has rank between $k$ and $k^2$, where $k$ is the number of clusters. As a result, spectral embeddings based on the top $k$ eigenvectors may fail to capture important structural information. Our numerical experiments on both synthetic and real datasets confirm that spectral clustering algorithms incorporating $k^2$ eigenvectors outperform traditional spectral approaches.


Incomplete Multi-view Deep Clustering with Data Imputation and Alignment

Neural Information Processing Systems

Incomplete multi-view deep clustering is an emerging research hot-pot to incorporate data information of multiple sources or modalities when parts of them are missing. Most of existing approaches encode the available data observations into multiple view-specific latent representations and subsequently integrate them for the next clustering task. However, they ignore that the latent representations are unique to a fixed set of data samples in all views. Meanwhile, the pair-wise similarities of missing data observations are also failed to utilize in latent representation learning sufficiently, leading to unsatisfactory clustering performance. To address these issues, we propose an incomplete multi-view deep clustering method with data imputation and alignment.