A relational dataset is often analyzed by optimally assigning a label to each element through clustering or ordering. While similar characterizations of a dataset would be achieved by both clustering and ordering methods, the former has been studied much more actively than the latter, particularly for the data represented as graphs. This study fills this gap by investigating methodological relationships between several clustering and ordering methods, focusing on spectral techniques. Furthermore, we evaluate the resulting performance of the clustering and ordering methods. To this end, we propose a measure called the label continuity error, which generically quantifies the degree of consistency between a sequence and partition for a set of elements. Based on synthetic and real-world datasets, we evaluate the extents to which an ordering method identifies a module structure and a clustering method identifies a banded structure.

Recently the Transformer structure has shown good performances in graph learning tasks. However, these Transformer models directly work on graph nodes and may have difficulties learning high-level information. Inspired by the vision transformer, which applies to image patches, we propose a new Transformer-based graph neural network: Patch Graph Transformer (PatchGT). Unlike previous transformer-based models for learning graph representations, PatchGT learns from non-trainable graph patches, not from nodes directly. It can help save computation and improve the model performance. The key idea is to segment a graph into patches based on spectral clustering without any trainable parameters, with which the model can first use GNN layers to learn patch-level representations and then use Transformer to obtain graph-level representations. The architecture leverages the spectral information of graphs and combines the strengths of GNNs and Transformers. Further, we show the limitations of previous hierarchical trainable clusters theoretically and empirically. We also prove the proposed non-trainable spectral clustering method is permutation invariant and can help address the information bottlenecks in the graph. PatchGT achieves higher expressiveness than 1-WL-type GNNs, and the empirical study shows that PatchGT achieves competitive performances on benchmark datasets and provides interpretability to its predictions. The implementation of our algorithm is released at our Github repo: https://github.com/tufts-ml/PatchGT.

Abstract--Performance debugging in production is a fundamental activity in modern service-based systems. The diagnosis of performance issues is often time-consuming, since it requires thorough inspection of large volumes of traces and performance indices. In this paper we present DeLag, a novel automated search-based approach for diagnosing performance issues in service-based systems. DeLag identifies subsets of requests that show, in the combination of their Remote Procedure Call execution times, symptoms of potentially relevant performance issues. We call such symptoms Latency Degradation Patterns. DeLag simultaneously searches for multiple latency degradation patterns while optimizing precision, recall and latency dissimilarity. Experimentation on 700 datasets of requests generated from two microservice-based systems shows that our approach provides better and more stable effectiveness than three state-of-the-art approaches and general purpose machine learning clustering algorithms. DeLag is more effective than all baseline techniques in at least one case study (with p 0.05 and non-negligible effect size). Moreover, DeLag outperforms in terms of efficiency the second and the third most effective baseline techniques on the largest datasets used in our evaluation (up to 22%). In order to support this fastpaced issue, and initial understanding, scoping and localization release cycle, IT organizations often employ several are among the most time-consuming phases during debugging. Unfortunately, frequent software releases often service-based systems [9], [10], [11], [12], [13], [14], [15], the hamper the ability to deliver high quality software [3]. For reduction of the manual effort and the time needed is still example, widely used performance assurance techniques, critical. Also, given the complexity of these systems rely on pattern mining to spot patterns in trace attributes and their workloads [6], it is often unfeasible to proactively (e.g., request size, response size, RPCs execution times) detect performance issues in a testing environment [7].

In online experimentation, appropriate metrics (e.g., purchase) provide strong evidence to support hypotheses and enhance the decision-making process. However, incomplete metrics are frequently occurred in the online experimentation, making the available data to be much fewer than the planned online experiments (e.g., A/B testing). In this work, we introduce the concept of dropout buyers and categorize users with incomplete metric values into two groups: visitors and dropout buyers. For the analysis of incomplete metrics, we propose a clustering-based imputation method using $k$-nearest neighbors. Our proposed imputation method considers both the experiment-specific features and users' activities along their shopping paths, allowing different imputation values for different users. To facilitate efficient imputation of large-scale data sets in online experimentation, the proposed method uses a combination of stratification and clustering. The performance of the proposed method is compared to several conventional methods in both simulation studies and a real online experiment at eBay.

The amount of sequencing data for SARS-CoV-2 is several orders of magnitude larger than any virus. This will continue to grow geometrically for SARS-CoV-2, and other viruses, as many countries heavily finance genomic surveillance efforts. Hence, we need methods for processing large amounts of sequence data to allow for effective yet timely decision-making. Such data will come from heterogeneous sources: aligned, unaligned, or even unassembled raw nucleotide or amino acid sequencing reads pertaining to the whole genome or regions (e.g., spike) of interest. In this work, we propose \emph{ViralVectors}, a compact feature vector generation from virome sequencing data that allows effective downstream analysis. Such generation is based on \emph{minimizers}, a type of lightweight "signature" of a sequence, used traditionally in assembly and read mapping -- to our knowledge, the first use minimizers in this way. We validate our approach on different types of sequencing data: (a) 2.5M SARS-CoV-2 spike sequences (to show scalability); (b) 3K Coronaviridae spike sequences (to show robustness to more genomic variability); and (c) 4K raw WGS reads sets taken from nasal-swab PCR tests (to show the ability to process unassembled reads). Our results show that ViralVectors outperforms current benchmarks in most classification and clustering tasks.

As a way to implement the "right to be forgotten" in machine learning, \textit{machine unlearning} aims to completely remove the contributions and information of the samples to be deleted from a trained model without affecting the contributions of other samples. Recently, many frameworks for machine unlearning have been proposed, and most of them focus on image and text data. To extend machine unlearning to graph data, \textit{GraphEraser} has been proposed. However, a critical issue is that \textit{GraphEraser} is specifically designed for the transductive graph setting, where the graph is static and attributes and edges of test nodes are visible during training. It is unsuitable for the inductive setting, where the graph could be dynamic and the test graph information is invisible in advance. Such inductive capability is essential for production machine learning systems with evolving graphs like social media and transaction networks. To fill this gap, we propose the \underline{{\bf G}}\underline{{\bf U}}ided \underline{{\bf I}}n\underline{{\bf D}}uctiv\underline{{\bf E}} Graph Unlearning framework (GUIDE). GUIDE consists of three components: guided graph partitioning with fairness and balance, efficient subgraph repair, and similarity-based aggregation. Empirically, we evaluate our method on several inductive benchmarks and evolving transaction graphs. Generally speaking, GUIDE can be efficiently implemented on the inductive graph learning tasks for its low graph partition cost, no matter on computation or structure information. The code will be available here: https://github.com/Happy2Git/GUIDE.

With a point matching distance measure which is invariant under translation, rotation and permutation, we learn 2-D point-set ob(cid:173) jects, by clustering noisy point-set images. Unlike traditional clus(cid:173) tering methods which use distance measures that operate on feature vectors - a representation common to most problem domains - this object-based clustering technique employs a distance measure spe(cid:173) cific to a type of object within a problem domain. Formulating the clustering problem as two nested objective functions, we derive optimization dynamics similar to the Expectation-Maximization algorithm used in mixture models.

We present a method for learning, tracking, and recognizing human hand gestures recorded by a conventional CCD camera without any special gloves or other sensors. A view-based representation is used to model aspects of the hand relevant to the trained gestures, and is found using an unsupervised clustering technique. We use normalized correlation net(cid:173) works, with dynamic time warping in the temporal domain, as a distance function for unsupervised clustering. Views are computed separably for space and time dimensions; the distributed response of the combination of these units characterizes the input data with a low dimensional repre(cid:173) sentation. A supervised classification stage uses labeled outputs of the spatio-temporal units as training data.

Data clustering amounts to a combinatorial optimization problem to re(cid:173) duce the complexity of a data representation and to increase its precision. Central and pairwise data clustering are studied in the maximum en(cid:173) tropy framework. For central clustering we derive a set of reestimation equations and a minimization procedure which yields an optimal num(cid:173) ber of clusters, their centers and their cluster probabilities. A meanfield approximation for pairwise clustering is used to estimate assignment probabilities. A se1fconsistent solution to multidimensional scaling and pairwise clustering is derived which yields an optimal embedding and clustering of data points in a d-dimensional Euclidian space.

This paper studies the convergence properties of the well known K-Means clustering algorithm. The K-Means algorithm can be de(cid:173) scribed either as a gradient descent algorithm or by slightly extend(cid:173) ing the mathematics of the EM algorithm to this hard threshold case. We show that the K-Means algorithm actually minimizes the quantization error using the very fast Newton algorithm.