Clustering
Testing hypotheses via orthogonalization
Dharamshi, Ameer, Zou, Runjia, Witten, Daniela
Classical hypothesis testing frameworks break down in contemporary settings in which null hypotheses are increasingly abstract, the same data are used to both generate and test hypotheses, and minimal assumptions about the underlying data are made. In this work, we propose a new framework for conducting valid hypothesis tests in broad contexts. We propose to add and subtract external noise generated from a symmetric shift-family to our data, $X$, to partition it into two pieces, $X^{(1)}$ and $X^{(2)}$. We provide a generic strategy for orthogonalizing $X^{(2)}$ against $X^{(1)}$ under the null hypothesis $H_0$, then show that testing whether the orthogonalization was successful provides a valid test of $H_0$ under mild assumptions. Remarkably, this framework extends naturally to the post-selection inference setting: we simply select a hypothesis on $X^{(1)}$, then perform orthogonalization under the selected null. As our approach neither requires pre-specification of the selection mechanism, nor is restricted to a small class of data-generating distributions, it dramatically expands the settings for which valid post-selection inference can be conducted. We showcase the flexibility of our proposal in several case studies involving challenging pre-specified null hypotheses and post-selection inference scenarios.
Improving Patient Subtyping on Longitudinal Data using Representations from Mamba-based Architecture
Mottalib, Md Mozaharul, Beheshti, Rahmatollah
Effective sub-typing (also known as grouping or clustering) of patients using their electronic health record (EHR) data can greatly inform precision medicine efforts. However, subtyping temporal EHR datasets is known to be challenging due to inherent EHR issues, including complexity and irregularity. In this study, we propose a self-supervised Mamba-based model that learns effective EHR representations and enables enhanced patient subtyping. We evaluate the proposed model on public and private real-world EHR datasets to classify the data based on the available labels and subtype patients based on the representations learned from the model. Through an extensive set of experiments, we demonstrate that our model's design choices lead to better performance compared to competitive baseline models for prediction. Moreover, we evaluate several clustering techniques to demonstrate that our findings offer valuable insights into subtyping patients based on temporal records from EHR models\footnote{Our implementations are available at https://github.com/healthylaife/triplet_mamba.
Hierarchical Partial-Order Models for Ranking
Li, Dongqing, Nicholls, Geoff K., Lee, Jeong Eun, Chuxuan, null, Jiang, null
Rank aggregation combines information from ordered lists ranking items by preference. Classical parametric models for such data, including the Mallows and Plackett-Luce models, assume the orders concentrate around one or more complete consensus rankings. Recent work relaxes the total-order assumption by allowing the consensus structure to be a partial order (poset), allowing for incomparabilities in preferences. However, in many applications preference data exhibit group structure. We introduce hierarchical partial order (HPO) models, which extend poset-based models to accommodate grouped data through a hierarchy of latent posets. This framework, which parallels mixture model extensions of the Mallows and Plackett-Luce models, enables principled sharing of information across groups while preserving partial-order structure. We show that the Plackett-Luce model and its hierarchical variants are special cases of HPO-models. We develop a hierarchical clustering extension (HCPO) for unsupervised clustering in settings where group labels are unknown. Bayesian inference for the latent poset hierarchy is performed using Markov chain Monte Carlo methods. Experiments on synthetic and real-world datasets, including pairwise acoustic preference data and LLM agent traces, demonstrate that the proposed HPO and HCPO models outperform existing approaches in both predictive performance and structural interpretability.
Ultrametric Cluster Hierarchies: IWant'em All!
Hierarchical clustering is a powerful tool for exploratory data analysis, organizing data into a tree of clusterings from which a partition can be chosen. This paper generalizes these ideas by proving that, for any reasonable hierarchy, one can optimally solve any center-based clustering objective over it (such as k-means). Moreover, these solutions can be found exceedingly quickly and are themselves necessarily hierarchical. Thus, given a cluster tree, we show that one can quickly access a plethora of new, equally meaningful hierarchies. Just as in standard hierarchical clustering, one can then choose any desired partition from these new hierarchies. We conclude by verifying the utility of our proposed techniques across datasets, hierarchies, and partitioning schemes.
Accelerating data-driven algorithm selection for combinatorial partitioning problems
Data-driven algorithm selection is a powerful approach for choosing effective heuristics for computational problems. It operates by evaluating a set of candidate algorithms on a collection of representative training instances and selecting the one with the best empirical performance. However, running each algorithm on every training instance is computationally expensive, making scalability a central challenge. In practice, a common workaround is to evaluate algorithms on smaller proxy instances derived from the original inputs. However, this practice has remained largely ad hoc and lacked theoretical grounding. We provide the first theoretical foundations for this practice by formalizing the notion of size generalization: predicting an algorithm's performance on a large instance by evaluating it on a smaller, representative instance, subsampled from the original instance. We provide size generalization guarantees for three widely used clustering algorithms (single-linkage, k-means++, and Gonzalez's k-centers heuristic) and two canonical max-cut algorithms (Goemans-Williamson and Greedy). We characterize the subsample size sufficient to ensure that performance on the subsample reflects performance on the full instance, and our experiments support these findings.
Discovering Opinion Intervals from Conflicts in Signed Graphs
Peter Blohm, Florian Chen, Aristides Gionis, Stefan Neumann
Online social media provide a platform for people to discuss current events and exchange opinions with their peers. While interactions are predominantly positive, in recent years, there has been a lot of research to understand the conflicts in social networks and how they are based on different views and opinions. In this paper, we ask whether the conflicts in a network reveal a small and interpretable set of prevalent opinion ranges that explain the users' interactions. More precisely, we consider signed graphs, where the edge signs indicate positive and negative interactions of node pairs, and our goal is to infer opinion intervals that are consistent with the edge signs.
Joint Hierarchical Representation Learning of Samples and Features via Informed Tree-Wasserstein Distance
Yet, most existing approaches for hierarchical representation learning consider only one mode at a time. In this work, we propose an unsupervised method for jointly learning hierarchical representations of samples and features via TreeWasserstein Distance (TWD). Our method alternates between the two data modes. It first constructs a tree for one mode, then computes a TWD for the other mode based on that tree, and finally uses the resulting TWD to build the second mode's tree.
Confidence-Aware With Prototype Alignment for Partial Multi-label Learning
Label prototype learning has emerged as an effective paradigm in Partial MultiLabel Learning (PML), providing a distinctive framework for modeling structured representations of label semantics while naturally filtering noise through prototypebased label confidence estimation. However, existing prototype-based methods face a critical limitation: class prototypes are the biased estimates due to noisy candidate labels, particularly when positive samples are scarce. To this end, we first propose a mutually class prototype alignment strategy bypassing noise interference by introducing two different transformation matrices, which makes the class prototypes learned by the fuzzy clustering and candidate label set mutually alignment for correcting themselves. Such alignment is also passed on to the fuzzy memberships label in turn. In addition, to eliminate noise interference in the candidate label set during the classifier learning, we use the learned permutation matrix to transform the fuzzy memberships label for learning a label reliability indicator matrix accompanied by the candidate label set. This makes the label reliability indicator matrix absolutely prevent the occurrence of numerical values located in non-label and simultaneously eliminate the introduction of incorrect label as much as possible.
Optimal Graph Clustering without Edge Density Signals
This paper establishes the theoretical limits of graph clustering under the PopularityAdjusted Block Model (PABM), addressing limitations of existing models. In contrast to the Stochastic Block Model (SBM), which assumes uniform vertex degrees, and to the Degree-Corrected Block Model (DCBM), which applies uniform degree corrections across clusters, PABM introduces separate popularity parameters for intra-and inter-cluster connections. Our main contribution is the characterization of the optimal error rate for clustering under PABM, which provides novel insights on clustering hardness: we demonstrate that unlike SBM and DCBM, cluster recovery remains possible in PABM even when traditional edge-density signals vanish, provided intra-and inter-cluster popularity coefficients differ. This highlights a dimension of degree heterogeneity captured by PABM but overlooked by DCBM: local differences in connectivity patterns can enhance cluster separability independently of global edge densities. Finally, because PABM exhibits a richer structure, its expected adjacency matrix has rank between k and k2, where k is the number of clusters. As a result, spectral embeddings based on the top k eigenvectors may fail to capture important structural information. Our numerical experiments on both synthetic and real datasets confirm that spectral clustering algorithms incorporating k2 eigenvectors outperform traditional spectral approaches.
Shape-Informed Clustering of Multi-Dimensional Functional Data via Deep Functional Autoencoders
We introduce FAEclust, a novel functional autoencoder framework for cluster analysis of multi-dimensional functional data, data that are random realizations of vector-valued random functions. Our framework features a universal-approximator encoder that captures complex nonlinear interdependencies among component functions, and a universal-approximator decoder capable of accurately reconstructing both Euclidean and manifold-valued functional data. Stability and robustness are enhanced through innovative regularization strategies applied to functional weights and biases. Additionally, we incorporate a clustering loss into the network's training objective, promoting the learning of latent representations that are conducive to effective clustering. A key innovation is our shape-informed clustering objective, ensuring that the clustering results are resistant to phase variations in the functions. We establish the universal approximation property of our non-linear decoder and validate the effectiveness of our model through extensive experiments.