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Latent Diffusion Models with Image-Derived Annotations for Enhanced AI-Assisted Cancer Diagnosis in Histopathology

arXiv.org Artificial Intelligence

Artificial Intelligence (AI) based image analysis has an immense potential to support diagnostic histopathology, including cancer diagnostics. However, developing supervised AI methods requires large-scale annotated datasets. A potentially powerful solution is to augment training data with synthetic data. Latent diffusion models, which can generate high-quality, diverse synthetic images, are promising. However, the most common implementations rely on detailed textual descriptions, which are not generally available in this domain. This work proposes a method that constructs structured textual prompts from automatically extracted image features. We experiment with the PCam dataset, composed of tissue patches only loosely annotated as healthy or cancerous. We show that including image-derived features in the prompt, as opposed to only healthy and cancerous labels, improves the Fr\'echet Inception Distance (FID) from 178.8 to 90.2. We also show that pathologists find it challenging to detect synthetic images, with a median sensitivity/specificity of 0.55/0.55. Finally, we show that synthetic data effectively trains AI models.


Fast Decision Boundary based Out-of-Distribution Detector

arXiv.org Artificial Intelligence

Efficient and effective Out-of-Distribution (OOD) detection is essential for the safe deployment of AI in latency-critical applications. Recently, studies have revealed that detecting OOD based on feature space information can be highly effective. Despite their effectiveness, however, exiting feature space OOD methods may incur non-negligible computational overhead, given their reliance on auxiliary models built from training features. In this paper, we aim to obviate auxiliary models to optimize computational efficiency while leveraging the rich information embedded in the feature space. We investigate from the novel perspective of decision boundaries and propose to detect OOD using the feature distance to decision boundaries. To minimize the cost of measuring the distance, we introduce an efficient closed-form estimation, analytically proven to tightly lower bound the distance. We observe that ID features tend to reside further from the decision boundaries than OOD features. Our observation aligns with the intuition that models tend to be more decisive on ID samples, considering that distance to decision boundaries quantifies model uncertainty. From our understanding, we propose a hyperparameter-free, auxiliary model-free OOD detector. Our OOD detector matches or surpasses the effectiveness of state-of-the-art methods across extensive experiments. Meanwhile, our OOD detector incurs practically negligible overhead in inference latency. Overall, we significantly enhance the efficiency-effectiveness trade-off in OOD detection.


Extrapolated cross-validation for randomized ensembles

arXiv.org Machine Learning

Ensemble methods such as bagging and random forests are ubiquitous in various fields, from finance to genomics. Despite their prevalence, the question of the efficient tuning of ensemble parameters has received relatively little attention. This paper introduces a cross-validation method, ECV (Extrapolated Cross-Validation), for tuning the ensemble and subsample sizes in randomized ensembles. Our method builds on two primary ingredients: initial estimators for small ensemble sizes using out-of-bag errors and a novel risk extrapolation technique that leverages the structure of prediction risk decomposition. By establishing uniform consistency of our risk extrapolation technique over ensemble and subsample sizes, we show that ECV yields $\delta$-optimal (with respect to the oracle-tuned risk) ensembles for squared prediction risk. Our theory accommodates general ensemble predictors, only requires mild moment assumptions, and allows for high-dimensional regimes where the feature dimension grows with the sample size. As a practical case study, we employ ECV to predict surface protein abundances from gene expressions in single-cell multiomics using random forests. In comparison to sample-split cross-validation and $K$-fold cross-validation, ECV achieves higher accuracy avoiding sample splitting. At the same time, its computational cost is considerably lower owing to the use of the risk extrapolation technique. Additional numerical results validate the finite-sample accuracy of ECV for several common ensemble predictors under a computational constraint on the maximum ensemble size.


Machine-Learned Exclusion Limits without Binning

arXiv.org Machine Learning

Machine-Learned Likelihoods (MLL) combines machine-learning classification techniques with likelihood-based inference tests to estimate the experimental sensitivity of high-dimensional data sets. We extend the MLL method by including Kernel Density Estimators (KDE) to avoid binning the classifier output to extract the resulting one-dimensional signal and background probability density functions. We first test our method on toy models generated with multivariate Gaussian distributions, where the true probability distribution functions are known. Later, we apply the method to two cases of interest at the LHC: a search for exotic Higgs bosons, and a $Z'$ boson decaying into lepton pairs. In contrast to physical-based quantities, the typical fluctuations of the ML outputs give non-smooth probability distributions for pure-signal and pure-background samples. The non-smoothness is propagated into the density estimation due to the good performance and flexibility of the KDE method. We study its impact on the final significance computation, and we compare the results using the average of several independent ML output realizations, which allows us to obtain smoother distributions. We conclude that the significance estimation turns out to be not sensible to this issue.


Context-Aware Stress Monitoring using Wearable and Mobile Technologies in Everyday Settings

arXiv.org Artificial Intelligence

Daily monitoring of stress is a critical component of maintaining optimal physical and mental health. Physiological signals and contextual information have recently emerged as promising indicators for detecting instances of heightened stress. Nonetheless, developing a real-time monitoring system that utilizes both physiological and contextual data to anticipate stress levels in everyday settings while also gathering stress labels from participants represents a significant challenge. We present a monitoring system that objectively tracks daily stress levels by utilizing both physiological and contextual data in a daily-life environment. Additionally, we have integrated a smart labeling approach to optimize the ecological momentary assessment (EMA) collection, which is required for building machine learning models for stress detection. We propose a three-tier Internet-of-Things-based system architecture to address the challenges. We utilized a cross-validation technique to accurately estimate the performance of our stress models. We achieved the F1-score of 70\% with a Random Forest classifier using both PPG and contextual data, which is considered an acceptable score in models built for everyday settings. Whereas using PPG data alone, the highest F1-score achieved is approximately 56\%, emphasizing the significance of incorporating both PPG and contextual data in stress detection tasks.


A wearable Gait Assessment Method for Lumbar Disc Herniation Based on Adaptive Kalman Filtering

arXiv.org Artificial Intelligence

Lumbar disc herniation (LDH) is a prevalent orthopedic condition in clinical practice. Inertial measurement unit sensors (IMUs) are an effective tool for monitoring and assessing gait impairment in patients with lumbar disc herniation (LDH). However, the current gait assessment of LDH focuses solely on single-source acceleration signal data, without considering the diversity of sensor data. It also overlooks the individual differences in motor function deterioration between the healthy and affected lower limbs in patients with LDH. To address this issue, we developed an LDH gait feature model that relies on multi-source adaptive Kalman data fusion of acceleration and angular velocity. We utilized an adaptive Kalman data fusion algorithm for acceleration and angular velocity to estimate the attitude angle and segment the gait phase. Two Inertial Measurement Units (IMUs) were used to analyze the gait characteristics of patients with lumbar disc issues and healthy individuals. This analysis included 12 gait characteristics, such as gait spatiotemporal parameters, kinematic parameters, and expansibility index numbers. Statistical methods were employed to analyze the characteristic model and confirm the biological differences between the healthy affected side of LDH and healthy subjects. Finally, a classifier based on feature engineering was utilized to classify the gait patterns of the affected side of patients with lumbar disc disease and healthy subjects. This approach achieved a classification accuracy of 95.50%, enhancing the recognition of LDH and healthy gait patterns. It also provided effective gait feature sets and methods for assessing LDH clinically.


Self-Evaluation Improves Selective Generation in Large Language Models

arXiv.org Artificial Intelligence

Safe deployment of large language models (LLMs) may benefit from a reliable method for assessing their generated content to determine when to abstain or to selectively generate. While likelihood-based metrics such as perplexity are widely employed, recent research has demonstrated the limitations of using sequence-level probability estimates given by LLMs as reliable indicators of generation quality. Conversely, LLMs have demonstrated strong calibration at the token level, particularly when it comes to choosing correct answers in multiple-choice questions or evaluating true/false statements. In this work, we reformulate open-ended generation tasks into token-level prediction tasks, and leverage LLMs' superior calibration at the token level. We instruct an LLM to self-evaluate its answers, employing either a multi-way comparison or a point-wise evaluation approach, with the option to include a ``None of the above'' option to express the model's uncertainty explicitly. We benchmark a range of scoring methods based on self-evaluation and evaluate their performance in selective generation using TruthfulQA and TL;DR. Through experiments with PaLM-2 and GPT-3, we demonstrate that self-evaluation based scores not only improve accuracy, but also correlate better with the overall quality of generated content.


Efficient speech detection in environmental audio using acoustic recognition and knowledge distillation

arXiv.org Artificial Intelligence

The ongoing biodiversity crisis, driven by factors such as land-use change and global warming, emphasizes the need for effective ecological monitoring methods. Acoustic monitoring of biodiversity has emerged as an important monitoring tool. Detecting human voices in soundscape monitoring projects is useful both for analysing human disturbance and for privacy filtering. Despite significant strides in deep learning in recent years, the deployment of large neural networks on compact devices poses challenges due to memory and latency constraints. Our approach focuses on leveraging knowledge distillation techniques to design efficient, lightweight student models for speech detection in bioacoustics. In particular, we employed the MobileNetV3-Small-Pi model to create compact yet effective student architectures to compare against the larger EcoVAD teacher model, a well-regarded voice detection architecture in eco-acoustic monitoring. The comparative analysis included examining various configurations of the MobileNetV3-Small-Pi derived student models to identify optimal performance. Additionally, a thorough evaluation of different distillation techniques was conducted to ascertain the most effective method for model selection. Our findings revealed that the distilled models exhibited comparable performance to the EcoVAD teacher model, indicating a promising approach to overcoming computational barriers for real-time ecological monitoring.


Reliability in Semantic Segmentation: Can We Use Synthetic Data?

arXiv.org Artificial Intelligence

Assessing the reliability of perception models to covariate shifts and out-of-distribution (OOD) detection is crucial for safety-critical applications such as autonomous vehicles. By nature of the task, however, the relevant data is difficult to collect and annotate. In this paper, we challenge cutting-edge generative models to automatically synthesize data for assessing reliability in semantic segmentation. By fine-tuning Stable Diffusion, we perform zero-shot generation of synthetic data in OOD domains or inpainted with OOD objects. Synthetic data is employed to provide an initial assessment of pretrained segmenters, thereby offering insights into their performance when confronted with real edge cases. Through extensive experiments, we demonstrate a high correlation between the performance on synthetic data and the performance on real OOD data, showing the validity approach. Furthermore, we illustrate how synthetic data can be utilized to enhance the calibration and OOD detection capabilities of segmenters.


WIT-UAS: A Wildland-fire Infrared Thermal Dataset to Detect Crew Assets From Aerial Views

arXiv.org Artificial Intelligence

We present the Wildland-fire Infrared Thermal (WIT-UAS) dataset for long-wave infrared sensing of crew and vehicle assets amidst prescribed wildland fire environments. While such a dataset is crucial for safety monitoring in wildland fire applications, to the authors' awareness, no such dataset focusing on assets near fire is publicly available. Presumably, this is due to the barrier to entry of collaborating with fire management personnel. We present two related data subsets: WIT-UAS-ROS consists of full ROS bag files containing sensor and robot data of UAS flight over the fire, and WIT-UAS-Image contains hand-labeled long-wave infrared (LWIR) images extracted from WIT-UAS-ROS. Our dataset is the first to focus on asset detection in a wildland fire environment. We show that thermal detection models trained without fire data frequently detect false positives by classifying fire as people. By adding our dataset to training, we show that the false positive rate is reduced significantly. Yet asset detection in wildland fire environments is still significantly more challenging than detection in urban environments, due to dense obscuring trees, greater heat variation, and overbearing thermal signal of the fire. We publicize this dataset to encourage the community to study more advanced models to tackle this challenging environment. The dataset, code and pretrained models are available at \url{https://github.com/castacks/WIT-UAS-Dataset}.