Performance Analysis
Can I trust my fake data -- A comprehensive quality assessment framework for synthetic tabular data in healthcare
Vallevik, Vibeke Binz, Babic, Aleksandar, Marshall, Serena Elizabeth, Elvatun, Severin, Brøgger, Helga, Alagaratnam, Sharmini, Edwin, Bjørn, Veeraragavan, Narasimha Raghavan, Befring, Anne Kjersti, Nygård, Jan Franz
Ensuring safe adoption of AI tools in healthcare hinges on access to sufficient data for training, testing and validation. In response to privacy concerns and regulatory requirements, using synthetic data has been suggested. Synthetic data is created by training a generator on real data to produce a dataset with similar statistical properties. Competing metrics with differing taxonomies for quality evaluation have been suggested, resulting in a complex landscape. Optimising quality entails balancing considerations that make the data fit for use, yet relevant dimensions are left out of existing frameworks. We performed a comprehensive literature review on the use of quality evaluation metrics on SD within the scope of tabular healthcare data and SD made using deep generative methods. Based on this and the collective team experiences, we developed a conceptual framework for quality assurance. The applicability was benchmarked against a practical case from the Dutch National Cancer Registry. We present a conceptual framework for quality assurance of SD for AI applications in healthcare that aligns diverging taxonomies, expands on common quality dimensions to include the dimensions of Fairness and Carbon footprint, and proposes stages necessary to support real-life applications. Building trust in synthetic data by increasing transparency and reducing the safety risk will accelerate the development and uptake of trustworthy AI tools for the benefit of patients. Despite the growing emphasis on algorithmic fairness and carbon footprint, these metrics were scarce in the literature review. The overwhelming focus was on statistical similarity using distance metrics while sequential logic detection was scarce. A consensus-backed framework that includes all relevant quality dimensions can provide assurance for safe and responsible real-life applications of SD.
Graph-Informed Neural Networks for Sparse Grid-Based Discontinuity Detectors
Della Santa, Francesco, Pieraccini, Sandra
Detecting discontinuity interfaces of discontinuous functions is a challenging task with significant implications across various scientific and engineering applications. Identifying these interfaces is particularly critical for functions with a high-dimensional domain, as their discontinuities can significantly influence the behavior of numerical methods and simulations; for example, within the realm of uncertainty quantification, where the smoothness of the target function plays a fundamental role in the use of stochastic collocation methods. Specifically, the knowledge of discontinuity interfaces enables the partitioning of the function domain into regions of smoothness, a crucial factor in improving the performance of numerical methods (e.g., see [17]). Other examples of discontinuity detection applications include signal processing, nonlinear partial differential equation (PDE) simulations, investigations of phase transitions in physical systems [14], and change-point analyses in geology or biology, to name a few [30]. The central objective of most discontinuity detection methods is to identify the position of discontinuities in the function domain using function evaluations on sets of points. Over the last few decades, progresses has been made in discontinuity detection, leading to the development of various algorithms. Notable works, such as [3, 2, 16, 35], have introduced significant contributions in this field. In particular, [3] introduced a polynomial annihilation edge detection method designed for piece-wise smooth functions with low-dimensional domains (n 2). This method identifies discontinuous interfaces by reconstructing jump functions based on a set of function evaluations.
Tissue Cross-Section and Pen Marking Segmentation in Whole Slide Images
Lucassen, Ruben T., Blokx, Willeke A. M., Veta, Mitko
Tissue segmentation is a routine preprocessing step to reduce the computational cost of whole slide image (WSI) analysis by excluding background regions. Traditional image processing techniques are commonly used for tissue segmentation, but often require manual adjustments to parameter values for atypical cases, fail to exclude all slide and scanning artifacts from the background, and are unable to segment adipose tissue. Pen marking artifacts in particular can be a potential source of bias for subsequent analyses if not removed. In addition, several applications require the separation of individual cross-sections, which can be challenging due to tissue fragmentation and adjacent positioning. To address these problems, we develop a convolutional neural network for tissue and pen marking segmentation using a dataset of 200 H&E stained WSIs. For separating tissue cross-sections, we propose a novel post-processing method based on clustering predicted centroid locations of the cross-sections in a 2D histogram. On an independent test set, the model achieved a mean Dice score of 0.981$\pm$0.033 for tissue segmentation and a mean Dice score of 0.912$\pm$0.090 for pen marking segmentation. The mean absolute difference between the number of annotated and separated cross-sections was 0.075$\pm$0.350. Our results demonstrate that the proposed model can accurately segment H&E stained tissue cross-sections and pen markings in WSIs while being robust to many common slide and scanning artifacts. The model with trained model parameters and post-processing method are made publicly available as a Python package called SlideSegmenter.
Beyond Accuracy-Fairness: Stop evaluating bias mitigation methods solely on between-group metrics
Goethals, Sofie, Calders, Toon, Martens, David
Artificial Intelligence (AI) finds widespread applications across various domains, sparking concerns about fairness in its deployment. While fairness in AI remains a central concern, the prevailing discourse often emphasizes outcome-based metrics without a nuanced consideration of the differential impacts within subgroups. Bias mitigation techniques do not only affect the ranking of pairs of instances across sensitive groups, but often also significantly affect the ranking of instances within these groups. Such changes are hard to explain and raise concerns regarding the validity of the intervention. Unfortunately, these effects largely remain under the radar in the accuracy-fairness evaluation framework that is usually applied. This paper challenges the prevailing metrics for assessing bias mitigation techniques, arguing that they do not take into account the changes within-groups and that the resulting prediction labels fall short of reflecting real-world scenarios. We propose a paradigm shift: initially, we should focus on generating the most precise ranking for each subgroup. Following this, individuals should be chosen from these rankings to meet both fairness standards and practical considerations.
Classification of Radiologically Isolated Syndrome and Clinically Isolated Syndrome with Machine-Learning Techniques
Mato-Abad, V, Labiano-Fontcuberta, A, Rodriguez-Yanez, S, Garcia-Vazquez, R, Munteanu, CR, Andrade-Garda, J, Domingo-Santos, A, Sanchez-Seco, V Galan, Aladro, Y, Martinez-Gines, ML, Ayuso, L, Benito-Leon, J
Background and purpose: The unanticipated detection by magnetic resonance imaging (MRI) in the brain of asymptomatic subjects of white matter lesions suggestive of multiple sclerosis (MS) has been named radiologically isolated syndrome (RIS). As the difference between early MS [i.e. clinically isolated syndrome (CIS)] and RIS is the occurrence of a clinical event, it is logical to improve detection of the subclinical form without interfering with MRI as there are radiological diagnostic criteria for that. Our objective was to use machine-learning classification methods to identify morphometric measures that help to discriminate patients with RIS from those with CIS. Methods: We used a multimodal 3-T MRI approach by combining MRI biomarkers (cortical thickness, cortical and subcortical grey matter volume, and white matter integrity) of a cohort of 17 patients with RIS and 17 patients with CIS for single-subject level classification. Results: The best proposed models to predict the diagnosis of CIS and RIS were based on the Naive Bayes, Bagging and Multilayer Perceptron classifiers using only three features: the left rostral middle frontal gyrus volume and the fractional anisotropy values in the right amygdala and right lingual gyrus. The Naive Bayes obtained the highest accuracy [overall classification, 0.765; area under the receiver operating characteristic (AUROC), 0.782]. Conclusions: A machine-learning approach applied to multimodal MRI data may differentiate between the earliest clinical expressions of MS (CIS and RIS) with an accuracy of 78%. Keywords: Bagging; Multilayer Perceptron; Naive Bayes classifier; clinically isolated syndrome; diffusion tensor imaging; machine-learning; magnetic resonance imaging; multiple sclerosis; radiologically isolated syndrome.
Between Lines of Code: Unraveling the Distinct Patterns of Machine and Human Programmers
Shi, Yuling, Zhang, Hongyu, Wan, Chengcheng, Gu, Xiaodong
Large language models have catalyzed an unprecedented wave in code generation. While achieving significant advances, they blur the distinctions between machine-and human-authored source code, causing integrity and authenticity issues of software artifacts. Previous methods such as DetectGPT have proven effective in discerning machine-generated texts, but they do not identify and harness the unique patterns of machine-generated code. Thus, its applicability falters when applied to code. In this paper, we carefully study the specific patterns that characterize machine and human-authored code. Through a rigorous analysis of code attributes such as length, lexical diversity, and naturalness, we expose unique pat-terns inherent to each source. We particularly notice that the structural segmentation of code is a critical factor in identifying its provenance. Based on our findings, we propose a novel machine-generated code detection method called DetectCodeGPT, which improves DetectGPT by capturing the distinct structural patterns of code. Diverging from conventional techniques that depend on external LLMs for perturbations, DetectCodeGPT perturbs the code corpus by strategically inserting spaces and newlines, ensuring both efficacy and efficiency. Experiment results show that our approach significantly outperforms state-of-the-art techniques in detecting machine-generated code.
Fine-tuning and Utilization Methods of Domain-specific LLMs
Recent releases of pre-trained Large Language Models (LLMs) have gained considerable traction, yet research on fine-tuning and employing domain-specific LLMs remains scarce. This study investigates approaches for fine-tuning and leveraging domain-specific LLMs, highlighting trends in LLMs, foundational models, and methods for domain-specific pre-training. Focusing on the financial sector, it details dataset selection, preprocessing, model choice, and considerations crucial for LLM fine-tuning in finance. Addressing the unique characteristics of financial data, the study explores the construction of domain-specific vocabularies and considerations for security and regulatory compliance. In the practical application of LLM fine-tuning, the study outlines the procedure and implementation for generating domain-specific LLMs in finance. Various financial cases, including stock price prediction, sentiment analysis of financial news, automated document processing, research, information extraction, and customer service enhancement, are exemplified. The study explores the potential of LLMs in the financial domain, identifies limitations, and proposes directions for improvement, contributing valuable insights for future research. Ultimately, it advances natural language processing technology in business, suggesting proactive LLM utilization in financial services across industries.
Graph Neural Networks based Log Anomaly Detection and Explanation
Li, Zhong, Shi, Jiayang, van Leeuwen, Matthijs
Event logs are widely used to record the status of high-tech systems, making log anomaly detection important for monitoring those systems. Most existing log anomaly detection methods take a log event count matrix or log event sequences as input, exploiting quantitative and/or sequential relationships between log events to detect anomalies. Unfortunately, only considering quantitative or sequential relationships may result in low detection accuracy. To alleviate this problem, we propose a graph-based method for unsupervised log anomaly detection, dubbed Logs2Graphs, which first converts event logs into attributed, directed, and weighted graphs, and then leverages graph neural networks to perform graph-level anomaly detection. Specifically, we introduce One-Class Digraph Inception Convolutional Networks, abbreviated as OCDiGCN, a novel graph neural network model for detecting graph-level anomalies in a collection of attributed, directed, and weighted graphs. By coupling the graph representation and anomaly detection steps, OCDiGCN can learn a representation that is especially suited for anomaly detection, resulting in a high detection accuracy. Importantly, for each identified anomaly, we additionally provide a small subset of nodes that play a crucial role in OCDiGCN's prediction as explanations, which can offer valuable cues for subsequent root cause diagnosis. Experiments on five benchmark datasets show that Logs2Graphs performs at least on par with state-of-the-art log anomaly detection methods on simple datasets while largely outperforming state-of-the-art log anomaly detection methods on complicated datasets.
RAW: A Robust and Agile Plug-and-Play Watermark Framework for AI-Generated Images with Provable Guarantees
Xian, Xun, Wang, Ganghua, Bi, Xuan, Srinivasa, Jayanth, Kundu, Ashish, Hong, Mingyi, Ding, Jie
Safeguarding intellectual property and preventing potential misuse of AI-generated images are of paramount importance. This paper introduces a robust and agile plug-and-play watermark detection framework, dubbed as RAW. As a departure from traditional encoder-decoder methods, which incorporate fixed binary codes as watermarks within latent representations, our approach introduces learnable watermarks directly into the original image data. Subsequently, we employ a classifier that is jointly trained with the watermark to detect the presence of the watermark. The proposed framework is compatible with various generative architectures and supports on-the-fly watermark injection after training. By incorporating state-of-the-art smoothing techniques, we show that the framework provides provable guarantees regarding the false positive rate for misclassifying a watermarked image, even in the presence of certain adversarial attacks targeting watermark removal. Experiments on a diverse range of images generated by state-of-the-art diffusion models reveal substantial performance enhancements compared to existing approaches. For instance, our method demonstrates a notable increase in AUROC, from 0.48 to 0.82, when compared to state-of-the-art approaches in detecting watermarked images under adversarial attacks, while maintaining image quality, as indicated by closely aligned FID and CLIP scores.
Subgroup analysis methods for time-to-event outcomes in heterogeneous randomized controlled trials
Perrin, Valentine, Noiry, Nathan, Loiseau, Nicolas, Nowak, Alex
Non-significant randomized control trials can hide subgroups of good responders to experimental drugs, thus hindering subsequent development. Identifying such heterogeneous treatment effects is key for precision medicine and many post-hoc analysis methods have been developed for that purpose. While several benchmarks have been carried out to identify the strengths and weaknesses of these methods, notably for binary and continuous endpoints, similar systematic empirical evaluation of subgroup analysis for time-to-event endpoints are lacking. This work aims to fill this gap by evaluating several subgroup analysis algorithms in the context of time-to-event outcomes, by means of three different research questions: Is there heterogeneity? What are the biomarkers responsible for such heterogeneity? Who are the good responders to treatment? In this context, we propose a new synthetic and semi-synthetic data generation process that allows one to explore a wide range of heterogeneity scenarios with precise control on the level of heterogeneity. We provide an open source Python package, available on Github, containing our generation process and our comprehensive benchmark framework. We hope this package will be useful to the research community for future investigations of heterogeneity of treatment effects and subgroup analysis methods benchmarking.