Time series analysis has emerged as an important tool for improving patient diagnosis and management in healthcare applications. However, these applications commonly face two critical challenges: time misalignment and data sparsity. Traditional approaches address these issues through a two-step process of imputation followed by prediction. We propose MAGIC (Multi-tAsk Gaussian Process for Imputation and Classification), a novel unified framework that simultaneously performs class-informed missing value imputation and label prediction within a hierarchical multi-task Gaussian process coupled with functional logistic regression. To handle intractable likelihood components, MAGIC employs Taylor expansion approximations with bounded error analysis, and parameter estimation is performed using EM algorithm with block coordinate optimization supported by convergence analysis. We validate MAGIC through two healthcare applications: prediction of post-traumatic headache improvement following mild traumatic brain injury and prediction of in-hospital mortality within 48 hours after ICU admission. In both applications, MAGIC achieves superior predictive accuracy compared to existing methods. The ability to generate real-time and accurate predictions with limited samples facilitates early clinical assessment and treatment planning, enabling healthcare providers to make more informed treatment decisions.

Spike-and-wave discharges (SWDs) are the electroencephalographic hallmark of absence epilepsy, yet their manual identification in multi-day recordings remains labour-intensive and error-prone. We present a lightweight hybrid pipeline that couples analytical features with a shallow artificial neural network (ANN) for accurate, patient-specific SWD detection in long-term, monopolar EEG. A two-sided moving-average (MA) filter first suppresses the high-frequency components of normal background activity. The residual signal is then summarised by the mean and the standard deviation of its normally distributed samples, yielding a compact, two-dimensional feature vector for every 20s window. These features are fed to a single-hidden-layer ANN trained via back-propagation to classify each window as SWD or non-SWD. The method was evaluated on 780 channels sampled at 256 Hz from 12 patients, comprising 392 annotated SWD events. It correctly detected 384 events (sensitivity: 98%) while achieving a specificity of 96.2 % and an overall accuracy of 97.2%. Because feature extraction is analytic, and the classifier is small, the pipeline runs in real-time and requires no manual threshold tuning. These results indicate that normal-distribution descriptors combined with a modest ANN provide an effective and computationally inexpensive solution for automated SWD screening in extended EEG recordings.

Infectious diseases continue to pose a serious threat to public health, underscoring the urgent need for effective computational approaches to screen novel anti-infective agents. Oligopeptides have emerged as promising candidates in antimicrobial research due to their structural simplicity, high bioavailability, and low susceptibility to resistance. Despite their potential, computational models specifically designed to predict associations between oligopeptides and infectious diseases remain scarce. This study introduces a prompt-guided graph-based contrastive learning framework (PGCLODA) to uncover potential associations. A tripartite graph is constructed with oligopeptides, microbes, and diseases as nodes, incorporating both structural and semantic information. To preserve critical regions during contrastive learning, a prompt-guided graph augmentation strategy is employed to generate meaningful paired views. A dual encoder architecture, integrating Graph Convolutional Network (GCN) and Transformer, is used to jointly capture local and global features. The fused embeddings are subsequently input into a multilayer perceptron (MLP) classifier for final prediction. Experimental results on a benchmark dataset indicate that PGCLODA consistently outperforms state-of-the-art models in AUROC, AUPRC, and accuracy. Ablation and hyperparameter studies confirm the contribution of each module. Case studies further validate the generalization ability of PGCLODA and its potential to uncover novel, biologically relevant associations. These findings offer valuable insights for mechanism-driven discovery and oligopeptide-based drug development. The source code of PGCLODA is available online at https://github.com/jjnlcode/PGCLODA.

Background and Aims: Large language models (LLMs) have shown remarkable generalization and transfer capabilities by learning from vast corpora of text and web data. Their semantic representations allow cross-task knowledge transfer and reasoning, offering promising opportunities for data-scarce and heterogeneous domains such as clinical medicine. Yet, in diagnostic tasks like sarcopenia, major challenges remain: interpretability, transparency, and deployment efficiency. Traditional machine learning (TML) models provide stable performance and feature-level attribution, ensuring traceable and auditable decision logic, but lack semantic breadth. Conversely, LLMs enable flexible inference but often function as opaque predictors. Existing integration strategies remain shallow, rarely embedding the structured reasoning of TML into LLM inference. Methods: Using sarcopenia diagnosis as a case study, SHapley Additive exPlanations (SHAP) were extracted from a baseline XGBoost model and transformed into structured, LLM-compatible representations. An actor-critic reinforcement learning (RL) strategy guided the LLM to reason over these SHAP-based inputs, producing calibrated rationales and refined decision rules. The distilled reasoning was consolidated into a structured knowledge repository and deployed via retrieval-augmented generation (RAG) for case-based inference. Results: (Omitted here.) Conclusion: By coupling SHAP-derived statistical evidence with reinforcement-trained LLM reasoning, CANDLE mitigates the interpretability-performance trade-off, enhances predictive accuracy, and preserves high decision consistency. The framework offers a scalable approach to knowledge assetization of TML models, enabling interpretable, reproducible, and clinically aligned decision support in sarcopenia and potentially broader medical domains.

The large language models (LLMs) are able to generate high-quality texts in multiple languages. Such texts are often not recognizable by humans as generated, and therefore present a potential of LLMs for misuse (e.g., plagiarism, spams, disinformation spreading). An automated detection is able to assist humans to indicate the machine-generated texts; however, its robustness to out-of-distribution data is still challenging. This notebook describes our mdok approach in robust detection, based on fine-tuning smaller LLMs for text classification. It is applied to both subtasks of Voight-Kampff Generative AI Detection 2025, providing remarkable performance (1st rank) in both, the binary detection as well as the multiclass classification of various cases of human-AI collaboration.

Vision-Language Models (VLMs) have demonstrated strong capabilities in aligning visual and textual modalities, enabling a wide range of applications in multimodal understanding and generation. While they excel in zero-shot and transfer learning scenarios, VLMs remain susceptible to misclassification, often yielding confident yet incorrect predictions. This limitation poses a significant risk in safety-critical domains, where erroneous predictions can lead to severe consequences. In this work, we introduce TrustVLM, a training-free framework designed to address the critical challenge of estimating when VLM's predictions can be trusted. Motivated by the observed modality gap in VLMs and the insight that certain concepts are more distinctly represented in the image embedding space, we propose a novel confidence-scoring function that leverages this space to improve misclassification detection. We rigorously evaluate our approach across 17 diverse datasets, employing 4 architectures and 2 VLMs, and demonstrate state-of-the-art performance, with improvements of up to 51.87% in AURC, 9.14% in AUROC, and 32.42% in FPR95 compared to existing baselines. By improving the reliability of the model without requiring retraining, TrustVLM paves the way for safer deployment of VLMs in real-world applications. The code is available at https://github.com/EPFL-IMOS/TrustVLM.

Open benchmarks are essential for evaluating and advancing large language models, offering reproducibility and transparency. However, their accessibility makes them likely targets of test set contamination. In this work, we introduce DyePack, a framework that leverages backdoor attacks to identify models that used benchmark test sets during training, without requiring access to the loss, logits, or any internal details of the model. Like how banks mix dye packs with their money to mark robbers, DyePack mixes backdoor samples with the test data to flag models that trained on it. We propose a principled design incorporating multiple backdoors with stochastic targets, enabling exact false positive rate (FPR) computation when flagging every model. This provably prevents false accusations while providing strong evidence for every detected case of contamination. We evaluate DyePack on five models across three datasets, covering both multiple-choice and open-ended generation tasks. For multiple-choice questions, it successfully detects all contaminated models with guaranteed FPRs as low as 0.000073% on MMLU-Pro and 0.000017% on Big-Bench-Hard using eight backdoors. For open-ended generation tasks, it generalizes well and identifies all contaminated models on Alpaca with a guaranteed false positive rate of just 0.127% using six backdoors.

Recent advances in generative world models have enabled classical safe control methods, such as Hamilton-Jacobi (HJ) reachability, to generalize to complex robotic systems operating directly from high-dimensional sensor observations. However, obtaining comprehensive coverage of all safety-critical scenarios during world model training is extremely challenging. As a result, latent safety filters built on top of these models may miss novel hazards and even fail to prevent known ones, overconfidently misclassifying risky out-of-distribution (OOD) situations as safe. To address this, we introduce an uncertainty-aware latent safety filter that proactively steers robots away from both known and unseen failures. Our key idea is to use the world model's epistemic uncertainty as a proxy for identifying unseen potential hazards. We propose a principled method to detect OOD world model predictions by calibrating an uncertainty threshold via conformal prediction. By performing reachability analysis in an augmented state space-spanning both the latent representation and the epistemic uncertainty-we synthesize a latent safety filter that can reliably safeguard arbitrary policies from both known and unseen safety hazards. In simulation and hardware experiments on vision-based control tasks with a Franka manipulator, we show that our uncertainty-aware safety filter preemptively detects potential unsafe scenarios and reliably proposes safe, in-distribution actions. Video results can be found on the project website at https://cmu-intentlab.github.io/UNISafe

Secure monitoring and dynamic control in an IIoT environment are major requirements for current development goals. We believe that dynamic, secure monitoring of the IIoT environment can be achieved through integration with the Software-Defined Network (SDN) and Digital Twin (DT) paradigms. The current literature lacks implementation details for SDN-based DT and time-aware intelligent model training for short-term anomaly detection against IIoT threats. Therefore, we have proposed a novel framework for short-term anomaly detection that uses an SDN-based DT. Using a comprehensive dataset, time-aware labeling of features, and a comprehensive evaluation of various machine learning models, we propose a novel SD-TWIN-based anomaly detection algorithm. According to the performance of a new real-time SD-TWIN deployment, the GPU- accelerated LightGBM model is particularly effective, achieving a balance of high recall and strong classification performance.

Advances in genomic medicine accelerate the identi cation of mutations in disease-associated genes, but the pathogenicity of many mutations remains unknown, hindering their use in diagnostics and clinical decision-making. Predictive AI models are generated to combat this issue, but current tools display low accuracy when tested against functionally validated datasets. We show that integrating detailed conformational data extracted from molecular dynamics simulations (MDS) into advanced AI-based models increases their predictive power. We carry out an exhaustive mutational analysis of the disease gene PMM2 and subject structural models of each variant to MDS. AI models trained on this dataset outperform existing tools when predicting the known pathogenicity of mutations. Our best performing model, a neuronal networks model, also predicts the pathogenicity of several PMM2 mutations currently considered of unknown signi cance. We believe this model helps alleviate the burden of unknown variants in genomic medicine.