Co-occurrence network inference algorithms have significantly advanced our understanding of microbiome communities. However, these algorithms typically analyze microbial associations within samples collected from a single environmental niche, often capturing only static snapshots rather than dynamic microbial processes. Previous studies have commonly grouped samples from different environmental niches together without fully considering how microbial communities adapt their associations when faced with varying ecological conditions. Our study addresses this limitation by explicitly investigating both spatial and temporal dynamics of microbial communities. We analyzed publicly available microbiome abundance data across multiple locations and time points, to evaluate algorithm performance in predicting microbial associations using our proposed Same-All Cross-validation (SAC) framework. SAC evaluates algorithms in two distinct scenarios: training and testing within the same environmental niche (Same), and training and testing on combined data from multiple environmental niches (All). To overcome the limitations of conventional algorithms, we propose fuser, an algorithm that, while not entirely new in machine learning, is novel for microbiome community network inference. It retains subsample-specific signals while simultaneously sharing relevant information across environments during training. Unlike standard approaches that infer a single generalized network from combined data, fuser generates distinct, environment-specific predictive networks. Our results demonstrate that fuser achieves comparable predictive performance to existing algorithms such as glmnet when evaluated within homogeneous environments (Same), and notably reduces test error compared to baseline algorithms in cross-environment (All) scenarios.

Effective personalized learning in computer science education depends on accurately modeling what students know and what they need to learn. While Knowledge Components (KCs) provide a foundation for such modeling, automated KC extraction from student code is inherently challenging due to insufficient explainability of discovered KCs and the open-endedness of programming problems with significant structural variability across student solutions and complex interactions among programming concepts. In this work, we propose a novel, explainable framework for automated KC discovery through pattern-based KCs: recurring structural patterns within student code that capture the specific programming patterns and language constructs that students must master. Toward this, we train a Variational Autoencoder to generate important representative patterns from student code guided by an explainable, attention-based code representation model that identifies important correct and incorrect pattern implementations from student code. These patterns are then clustered to form pattern-based KCs. We evaluate our KCs using two well-established methods informed by Cognitive Science: learning curve analysis and Deep Knowledge Tracing (DKT). Experimental results demonstrate meaningful learning trajectories and significant improvements in DKT predictive performance over traditional KT methods. This work advances knowledge modeling in CS education by providing an automated, scalable, and explainable framework for identifying granular code patterns and algorithmic constructs, essential for student learning.

Modeling clinical time-series data is hampered by the challenge of capturing latent, time-varying dependencies among features. State-of-the-art approaches often rely on black-box mechanisms or simple aggregation, failing to explicitly model how the influence of one clinical variable propagates through others over time. We propose $\textbf{Chain-of-Influence (CoI)}$, an interpretable deep learning framework that constructs an explicit, time-unfolded graph of feature interactions. CoI leverages a multi-level attention architecture: first, a temporal attention layer identifies critical time points in a patient's record; second, a cross-feature attention layer models the directed influence from features at these time points to subsequent features. This design enables the tracing of influence pathways, providing a granular audit trail that shows how any feature at any time contributes to the final prediction, both directly and through its influence on other variables. We evaluate CoI on mortality and disease progression tasks using the MIMIC-IV dataset and a private chronic kidney disease cohort. Our framework significantly outperforms existing methods in predictive accuracy. More importantly, through case studies, we show that CoI can uncover clinically meaningful, patient-specific patterns of disease progression that are opaque to other models, offering unprecedented transparency into the temporal and cross-feature dependencies that inform clinical decision-making.

Adaptive experiments improve efficiency by adjusting treatment assignments based on past outcomes, but this adaptivity breaks the i.i.d. assumptions that underpins classical asymptotics. At the same time, many questions of interest are distributional, extending beyond average effects. Kernel treatment effects (KTE) provide a flexible framework by representing counterfactual outcome distributions in an RKHS and comparing them via kernel distances. We present the first kernel-based framework for distributional inference under adaptive data collection. Our method combines doubly robust scores with variance stabilization to ensure asymptotic normality via a Hilbert-space martingale CLT, and introduces a sample-fitted stabilized test with valid type-I error. Experiments show it is well calibrated and effective for both mean shifts and higher-moment differences, outperforming adaptive baselines limited to scalar effects.

Twelve-lead electrocardiograms (ECGs) are the clinical gold standard for cardiac diagnosis, providing comprehensive spatial coverage of the heart necessary to detect conditions such as myocardial infarction (MI). However, their lack of portability limits continuous and large-scale use. Three-lead ECG systems are widely used in wearable devices due to their simplicity and mobility, but they often fail to capture pathologies in unmeasured regions. To address this, we propose WearECG, a Variational Autoencoder (VAE) method that reconstructs twelve-lead ECGs from three leads: II, V1, and V5. Our model includes architectural improvements to better capture temporal and spatial dependencies in ECG signals. We evaluate generation quality using MSE, MAE, and Frechet Inception Distance (FID), and assess clinical validity via a Turing test with expert cardiologists. To further validate diagnostic utility, we fine-tune ECGFounder, a large-scale pretrained ECG model, on a multi-label classification task involving over 40 cardiac conditions, including six different myocardial infarction locations, using both real and generated signals. Experiments on the MIMIC dataset show that our method produces physiologically realistic and diagnostically informative signals, with robust performance in downstream tasks. This work demonstrates the potential of generative modeling for ECG reconstruction and its implications for scalable, low-cost cardiac screening.

The conventional approaches treat it as a simple binary classification task without statistical guarantees. A recent approach is designed to control the false discovery rate (FDR), but its guarantees rely on strong, easily violated assumptions. In this paper, we introduce Provable Training Data Identification (PTDI), a rigorous method that identifies a set of training data with strict false discovery rate (FDR) control. Specifically, our method computes p-values for each data point using a set of known unseen data, and then constructs a conservative estimator for the data usage proportion of the test set, which allows us to scale these p-values. Our approach then selects the final set of training data by identifying all points whose scaled p-values fall below a data-dependent threshold. This entire procedure enables the discovery of training data with provable, strict FDR control and significantly boosted power. Extensive experiments across a wide range of models (LLMs and VLMs), and datasets demonstrate that PTDI strictly controls the FDR and achieves higher power. These concerns raise the importance of identifying a specific, well-defined set of data allegedly used in training. To resolve such high-stakes disputes, claims must be supported by credible evidence that strictly controls the risk of false positives. This underscores the need for methods that provide rigorous statistical guarantees for identifying training data.

Objectives: Timely and accurate detection of colorectal polyps plays a crucial role in diagnosing and preventing colorectal cancer, a major cause of mortality worldwide. This study introduces a new, lightweight, and efficient framework for polyp detection that combines the Local Outlier Factor (LOF) algorithm for filtering noisy data with the YOLO-v11n deep learning model. Study design: An experimental study leveraging deep learning and outlier removal techniques across multiple public datasets. Methods: The proposed approach was tested on five diverse and publicly available datasets: CVC-ColonDB, CVC-ClinicDB, Kvasir-SEG, ETIS, and EndoScene. Since these datasets originally lacked bounding box annotations, we converted their segmentation masks into suitable detection labels. To enhance the robustness and generalizability of our model, we apply 5-fold cross-validation and remove anomalous samples using the LOF method configured with 30 neighbors and a contamination ratio of 5%. Cleaned data are then fed into YOLO-v11n, a fast and resource-efficient object detection architecture optimized for real-time applications. We train the model using a combination of modern augmentation strategies to improve detection accuracy under diverse conditions. Results: Our approach significantly improves polyp localization performance, achieving a precision of 95.83%, recall of 91.85%, F1-score of 93.48%, mAP@0.5 of 96.48%, and mAP@0.5:0.95 of 77.75%. Compared to previous YOLO-based methods, our model demonstrates enhanced accuracy and efficiency. Conclusions: These results suggest that the proposed method is well-suited for real-time colonoscopy support in clinical settings. Overall, the study underscores how crucial data preprocessing and model efficiency are when designing effective AI systems for medical imaging.

Federated Learning (FL) enables the training of machine learning models across decentralized clients while preserving data privacy. However, the presence of anomalous or corrupted clients - such as those with faulty sensors or non representative data distributions - can significantly degrade model performance. Detecting such clients without accessing raw data remains a key challenge. We propose WAFFLE (Wavelet and Fourier representations for Federated Learning) a detection algorithm that labels malicious clients {\it before training}, using locally computed compressed representations derived from either the Wavelet Scattering Transform (WST) or the Fourier Transform. Both approaches provide low-dimensional, task-agnostic embeddings suitable for unsupervised client separation. A lightweight detector, trained on a distillated public dataset, performs the labeling with minimal communication and computational overhead. While both transforms enable effective detection, WST offers theoretical advantages, such as non-invertibility and stability to local deformations, that make it particularly well-suited to federated scenarios. Experiments on benchmark datasets show that our method improves detection accuracy and downstream classification performance compared to existing FL anomaly detection algorithms, validating its effectiveness as a pre-training alternative to online detection strategies.

The application of AI in psychiatric diagnosis faces significant challenges, including the subjective nature of mental health assessments, symptom overlap across disorders, and privacy constraints limiting data availability. To address these issues, we present MoodAngels, the first specialized multi-agent framework for mood disorder diagnosis. Our approach combines granular-scale analysis of clinical assessments with a structured verification process, enabling more accurate interpretation of complex psychiatric data. Complementing this framework, we introduce MoodSyn, an open-source dataset of 1,173 synthetic psychiatric cases that preserves clinical validity while ensuring patient privacy. Experimental results demonstrate that MoodAngels outperforms conventional methods, with our baseline agent achieving 12.3% higher accuracy than GPT-4o on real-world cases, and our full multi-agent system delivering further improvements. Evaluation in the MoodSyn dataset demonstrates exceptional fidelity, accurately reproducing both the core statistical patterns and complex relationships present in the original data while maintaining strong utility for machine learning applications. Together, these contributions provide both an advanced diagnostic tool and a critical research resource for computational psychiatry, bridging important gaps in AI-assisted mental health assessment.

Personalizing jargon detection and explanation is essential for making technical documents accessible to readers with diverse disciplinary backgrounds. However, tailoring models to individual users typically requires substantial annotation efforts and computational resources due to user-specific finetuning. To address this, we present a systematic study of personalized jargon detection, focusing on methods that are both efficient and scalable for real-world deployment. We explore two personalization strategies: (1) lightweight finetuning using Low-Rank Adaptation (LoRA) on open-source models, and (2) personalized prompting, which tailors model behavior at inference time without retaining. To reflect realistic constraints, we also investigate semi-supervised approaches that combine limited annotated data with self-supervised learning from users' publications. Our personalized LoRA model outperforms GPT-4 with contextual prompting by 21.4% in F1 score and exceeds the best performing oracle baseline by 8.3%. Remarkably, our method achieves comparable performance using only 10% of the annotated training data, demonstrating its practicality for resource-constrained settings. Our study offers the first work to systematically explore efficient, low-resource personalization of jargon detection using open-source language models, offering a practical path toward scalable, user-adaptive NLP system.