Systematic reviews, which summarize and synthesize all the current research in a specific topic, are a crucial component to academia. They are especially important in the biomedical and health sciences, where they synthesize the state of medical evidence and conclude the best course of action for various diseases, pathologies, and treatments. Due to the immense amount of literature that exists, as well as the output rate of research, reviewing abstracts can be a laborious process. Automation may be able to significantly reduce this workload. Of course, such classifications are not easily automated due to the peculiar nature of written language. Machine learning may be able to help. This paper explored the viability and effectiveness of using machine learning modelling to classify abstracts according to specific exclusion/inclusion criteria, as would be done in the first stage of a systematic review. The specific task was performing the classification of deciding whether an abstract is a randomized control trial (RCT) or not, a very common classification made in systematic reviews in the healthcare field. Random training/testing splits of an n=2042 dataset of labelled abstracts were repeatedly created (1000 times in total), with a model trained and tested on each of these instances. A Bayes classifier as well as an SVM classifier were used, and compared to non-machine learning, simplistic approaches to textual classification. An SVM classifier was seen to be highly effective, yielding a 90% accuracy, as well as an F1 score of 0.84, and yielded a potential workload reduction of 70%. This shows that machine learning has the potential to significantly revolutionize the abstract screening process in healthcare systematic reviews.

In this work, we attempt to solve the Hit Song Science problem, which aims to predict which songs will become chart-topping hits. We constructed a dataset with approximately 1.8 million hit and non-hit songs and extracted their audio features using the Spotify Web API. We test four models on our dataset. Our best model was random forest, which was able to predict Billboard song success with 88% accuracy.

Echo State Networks (ESNs) are known for their fast and precise one-shot learning of time series. But they often need good hyper-parameter tuning for best performance. For this good validation is key, but usually, a single validation split is used. In this rather practical contribution we suggest several schemes for cross-validating ESNs and introduce an efficient algorithm for implementing them. The component that dominates the time complexity of the already quite fast ESN training remains constant (does not scale up with $k$) in our proposed method of doing $k$-fold cross-validation. The component that does scale linearly with $k$ starts dominating only in some not very common situations. Thus in many situations $k$-fold cross-validation of ESNs can be done for virtually the same time complexity as a simple single split validation. Space complexity can also remain the same. We also discuss when the proposed validation schemes for ESNs could be beneficial and empirically investigate them on several different real-world datasets.

Machine learning algorithms find frequent application in spatial prediction of biotic and abiotic environmental variables. However, the characteristics of spatial data, especially spatial autocorrelation, are widely ignored. We hypothesize that this is problematic and results in models that can reproduce training data but are unable to make spatial predictions beyond the locations of the training samples. We assume that not only spatial validation strategies but also spatial variable selection is essential for reliable spatial predictions. We introduce two case studies that use remote sensing to predict land cover and the leaf area index for the "Marburg Open Forest", an open research and education site of Marburg University, Germany. We use the machine learning algorithm Random Forests to train models using non-spatial and spatial cross-validation strategies to understand how spatial variable selection affects the predictions. Our findings confirm that spatial cross-validation is essential in preventing overoptimistic model performance. We further show that highly autocorrelated predictors (such as geolocation variables, e.g. latitude, longitude) can lead to considerable overfitting and result in models that can reproduce the training data but fail in making spatial predictions. The problem becomes apparent in the visual assessment of the spatial predictions that show clear artefacts that can be traced back to a misinterpretation of the spatially autocorrelated predictors by the algorithm. Spatial variable selection could automatically detect and remove such variables that lead to overfitting, resulting in reliable spatial prediction patterns and improved statistical spatial model performance. We conclude that in addition to spatial validation, a spatial variable selection must be considered in spatial predictions of ecological data to produce reliable predictions.

--Deep neural networks (DNNs) have demonstrated impressive performance on many challenging machine learning tasks. However, DNNs are vulnerable to adversarial inputs generated by adding maliciously crafted perturbations to the benign inputs. As a growing number of attacks have been reported to generate adversarial inputs of varying sophistication, the defense-attack arms race has been accelerated. MODEF intelligently combines unsupervised model denoising ensemble with supervised model verification ensemble by quantifying model diversity, aiming to boost the robustness of the target model against adversarial examples. Evaluated using eleven representative attacks on popular benchmark datasets, we show that MODEF achieves remarkable defense success rates, compared with existing defense methods, and provides a superior capability of repairing adversarial inputs and making correct predictions with high accuracy in the presence of black-box attacks. The recent advances in deep neural networks (DNNs) have powered numerous applications in different domains due to their outstanding performance compared to traditional machine learning techniques. However, it has been shown that DNNs can be easily fooled by adversarial inputs [1], making them become a double-edged sword as the vulnerability of DNNs to adversarial attacks has posed serious threats to many security-critical applications, such as biometric authentication and autonomous driving. As a number of defenses are being proposed, more attacks of varying sophistication have been put forward, accelerating the defense-attack arms race. Some even argue that designing new attacks requires much less efforts than developing effective defenses. Thus, improving the robustness and defensibility against adversarial attacks is crucial. Adversarial examples are generated by maliciously perturbing benign examples sent to the target DNN model through querying its prediction API, aiming to fool and mislead the target model to misclassify by producing incorrect predictions randomly (untargeted attack) or purposefully (targeted attack).

In many real life situations, including job and loan applications, gatekeepers must make justified, real-time decisions about a person's fitness for a particular opportunity. People on both sides of such decisions have understandable concerns about their fairness, especially when they occur online or algorithmically. In this paper we consider the setting where we try to satisfy approximate fairness in an online decision making process where examples are sampled i.i.d from an underlying distribution. The fairness metric we consider is "equalized odds", which requires that approximately equalized false positive rates and false negative rates across groups. Our work follows from the classical learning from experts scheme and extends the multiplicative weights algorithm by maintaining an estimation for label distribution and keeping separate weights for label classes as well as groups. Our theoretical results show that approximate equalized odds can be achieved without sacrificing much regret from some distributions. We also demonstrate the algorithm on real data sets commonly used by the fairness community.

Late diagnosis and high costs are key factors that negatively impact the care of cancer patients worldwide. Although the availability of biological markers for the diagnosis of cancer type is increasing, costs and reliability of tests currently present a barrier to the adoption of their routine use. There is a pressing need for accurate methods that enable early diagnosis and cover a broad range of cancers. The use of machine learning and RNA-seq expression analysis has shown promise in the classification of cancer type. However, research is inconclusive about which type of machine learning models are optimal. The suitability of five algorithms were assessed for the classification of 17 different cancer types. Each algorithm was fine-tuned and trained on the full array of 18,015 genes per sample, for 4,221 samples (75 % of the dataset). They were then tested with 1,408 samples (25 % of the dataset) for which cancer types were withheld to determine the accuracy of prediction. The results show that ensemble algorithms achieve 100% accuracy in the classification of 14 out of 17 types of cancer. The clustering and classification models, while faster than the ensembles, performed poorly due to the high level of noise in the dataset. When the features were reduced to a list of 20 genes, the ensemble algorithms maintained an accuracy above 95% as opposed to the clustering and classification models.

Recently, many methods to reduce neural networks uncertainty have been proposed. However, most of the techniques used in these solutions usually present severe drawbacks. In this paper, we argue that neural networks low out-of-distribution detection performance is mainly due to the SoftMax loss anisotropy. Therefore, we built an isotropic loss to reduce neural networks uncertainty in a fast, scalable, turnkey, and native approach. Our experiments show that replacing SoftMax with the proposed loss does not affect classification accuracy. Moreover, our proposal overcomes ODIN typically by a large margin while producing usually competitive results against a state-of-the-art Mahalanobis method despite avoiding their limitations. Hence, neural networks uncertainty may be significantly reduced by a simple loss change without relying on special procedures such as data augmentation, adversarial training/validation, ensembles, or additional classification/regression models.

Class imbalance problem is commonly faced while developing machine learning models for real-life issues. Due to this problem, the fitted model tends to be biased towards the majority class data, which leads to lower precision, recall, AUC, F1, G-mean score. Several researches have been done to tackle this problem, most of which employed resampling, i.e. oversampling and undersampling techniques to bring the required balance in the data. In this paper, we propose neural network based algorithms for undersampling. Then we resampled several class imbalanced data using our algorithms and also some other popular resampling techniques. Afterwards we classified these undersampled data using some common classifier. We found out that our resampling approaches outperform most other resampling techniques in terms of both AUC, F1 and G-mean score.

When several predictors have been trained to solve the same classification task, a second level of algorithmic procedure is necessary to reconcile the classifier predictions and deliver a single one. Such a procedure is known as classifier combination, fusion or aggregation. When each individual classifier is trained using the same training algorithm (but under different circumstances) the aggregation procedure is referred to as an ensemble method. When each classifier may be generated by different training algorithms, the aggregation procedure is referred to as a multiple classifier system. In both cases, the set of individual classifiers is called a classifier ensemble. Classifier combination comes either from a choice of the programmer or is imposed by context. In the first case, combination is meant to increase classification performances by either increasing the learning capacity or mitigating 1 arXiv:1908.06475v1