Performance Analysis
Model-based metrics: Sample-efficient estimates of predictive model subpopulation performance
Miller, Andrew C., Gatys, Leon A., Futoma, Joseph, Fox, Emily B.
Machine learning models $-$ now commonly developed to screen, diagnose, or predict health conditions $-$ are evaluated with a variety of performance metrics. An important first step in assessing the practical utility of a model is to evaluate its average performance over an entire population of interest. In many settings, it is also critical that the model makes good predictions within predefined subpopulations. For instance, showing that a model is fair or equitable requires evaluating the model's performance in different demographic subgroups. However, subpopulation performance metrics are typically computed using only data from that subgroup, resulting in higher variance estimates for smaller groups. We devise a procedure to measure subpopulation performance that can be more sample-efficient than the typical subsample estimates. We propose using an evaluation model $-$ a model that describes the conditional distribution of the predictive model score $-$ to form model-based metric (MBM) estimates. Our procedure incorporates model checking and validation, and we propose a computationally efficient approximation of the traditional nonparametric bootstrap to form confidence intervals. We evaluate MBMs on two main tasks: a semi-synthetic setting where ground truth metrics are available and a real-world hospital readmission prediction task. We find that MBMs consistently produce more accurate and lower variance estimates of model performance for small subpopulations.
Machine Learning Approaches for Inferring Liver Diseases and Detecting Blood Donors from Medical Diagnosis
Mostafa, Fahad B., Hasan, Md Easin
For a medical diagnosis, health professionals use different kinds of pathological ways to make a decision for medical reports in terms of patients medical condition. In the modern era, because of the advantage of computers and technologies, one can collect data and visualize many hidden outcomes from them. Statistical machine learning algorithms based on specific problems can assist one to make decisions. Machine learning data driven algorithms can be used to validate existing methods and help researchers to suggest potential new decisions. In this paper, multiple imputation by chained equations was applied to deal with missing data, and Principal Component Analysis to reduce the dimensionality. To reveal significant findings, data visualizations were implemented. We presented and compared many binary classifier machine learning algorithms (Artificial Neural Network, Random Forest, Support Vector Machine) which were used to classify blood donors and non-blood donors with hepatitis, fibrosis and cirrhosis diseases. From the data published in UCI-MLR [1], all mentioned techniques were applied to find one better method to classify blood donors and non-blood donors (hepatitis, fibrosis, and cirrhosis) that can help health professionals in a laboratory to make better decisions. Our proposed ML-method showed better accuracy score (e.g. 98.23% for SVM). Thus, it improved the quality of classification.
Customizable Reference Runtime Monitoring of Neural Networks using Resolution Boxes
Wu, Changshun, Falcone, Yliès, Bensalem, Saddek
We present an approach for the runtime verification of classification systems via data abstraction. Data abstraction relies on the notion of box with a resolution. Boxbased abstraction consists in representing a set of values by its minimal and maximal values in each dimension. We augment boxes with a notion of resolution; this allows to define the notion of clustering coverage, which is intuitively a quantitative metric over boxes that indicates the quality of the abstraction. This allows studying the effect of different clustering parameters on the constructed boxes and estimating an interval of sub-optimal parameters. Moreover, we show how to automatically construct monitors that make use of both the correct and incorrect behaviors of a classification system. This allows checking the size of the monitor abstractions and analysing the separability of the network. Monitors are obtained by combining the sub-monitors of each class of the system placed at some selected layers. Our experiments demonstrate the effectiveness of our clustering coverage estimation and show how to assess the effectiveness and precision of monitors according to the selected clustering parameter and the chosen monitored layers.
Quantum Causal Inference in the Presence of Hidden Common Causes: an Entropic Approach
Javidian, Mohammad Ali, Aggarwal, Vaneet, Jacob, Zubin
Quantum causality is an emerging field of study which has the potential to greatly advance our understanding of quantum systems. One of the most important problems in quantum causality is linked to this prominent aphorism that states correlation does not mean causation. A direct generalization of the existing causal inference techniques to the quantum domain is not possible due to superposition and entanglement. We put forth a new theoretical framework for merging quantum information science and causal inference by exploiting entropic principles. For this purpose, we leverage the concept of conditional density matrices to develop a scalable algorithmic approach for inferring causality in the presence of latent confounders (common causes) in quantum systems. We apply our proposed framework to an experimentally relevant scenario of identifying message senders on quantum noisy links, where it is validated that the input before noise as a latent confounder is the cause of the noisy outputs. We also demonstrate that the proposed approach outperforms the results of classical causal inference even when the variables are classical by exploiting quantum dependence between variables through density matrices rather than joint probability distributions. Thus, the proposed approach unifies classical and quantum causal inference in a principled way. This successful inference on a synthetic quantum dataset can lay the foundations of identifying originators of malicious activity on future multi-node quantum networks.
Explainable Artificial Intelligence Reveals Novel Insight into Tumor Microenvironment Conditions Linked with Better Prognosis in Patients with Breast Cancer
Chakraborty, Debaditya, Ivan, Cristina, Amero, Paola, Khan, Maliha, Rodriguez-Aguayo, Cristian, Başağaoğlu, Hakan, Lopez-Berestein, Gabriel
We investigated the data-driven relationship between features in the tumor microenvironment (TME) and the overall and 5-year survival in triple-negative breast cancer (TNBC) and non-TNBC (NTNBC) patients by using Explainable Artificial Intelligence (XAI) models. We used clinical information from patients with invasive breast carcinoma from The Cancer Genome Atlas and from two studies from the cbioPortal, the PanCanAtlas project and the GDAC Firehose study. In this study, we used a normalized RNA sequencing data-driven cohort from 1,015 breast cancer patients, alive or deceased, from the UCSC Xena data set and performed integrated deconvolution with the EPIC method to estimate the percentage of seven different immune and stromal cells from RNA sequencing data. Novel insights derived from our XAI model showed that CD4+ T cells and B cells are more critical than other TME features for enhanced prognosis for both TNBC and NTNBC patients. Our XAI model revealed the critical inflection points (i.e., threshold fractions) of CD4+ T cells and B cells above or below which 5-year survival rates improve. Subsequently, we ascertained the conditional probabilities of $\geq$ 5-year survival in both TNBC and NTNBC patients under specific conditions inferred from the inflection points. In particular, the XAI models revealed that a B-cell fraction exceeding 0.018 in the TME could ensure 100% 5-year survival for NTNBC patients. The findings from this research could lead to more accurate clinical predictions and enhanced immunotherapies and to the design of innovative strategies to reprogram the TME of breast cancer patients.
Selecting a number of voters for a voting ensemble
For a voting ensemble that selects an odd-sized subset of the ensemble classifiers at random for each example, applies them to the example, and returns the majority vote, we show that any number of voters may minimize the error rate over an out-of-sample distribution. The optimal number of voters depends on the out-of-sample distribution of the number of classifiers in error. To select a number of voters to use, estimating that distribution then inferring error rates for numbers of voters gives lower-variance estimates than directly estimating those error rates.
Knowledge Triggering, Extraction and Storage via Human-Robot Verbal Interaction
Grassi, Lucrezia, Recchiuto, Carmine Tommaso, Sgorbissa, Antonio
This article describes a novel approach to expand in run-time the knowledge base of an Artificial Conversational Agent. A technique for automatic knowledge extraction from the user's sentence and four methods to insert the new acquired concepts in the knowledge base have been developed and integrated into a system that has already been tested for knowledge-based conversation between a social humanoid robot and residents of care homes. The run-time addition of new knowledge allows overcoming some limitations that affect most robots and chatbots: the incapability of engaging the user for a long time due to the restricted number of conversation topics. The insertion in the knowledge base of new concepts recognized in the user's sentence is expected to result in a wider range of topics that can be covered during an interaction, making the conversation less repetitive. Two experiments are presented to assess the performance of the knowledge extraction technique, and the efficiency of the developed insertion methods when adding several concepts in the Ontology.
FCOS3D: Fully Convolutional One-Stage Monocular 3D Object Detection
Wang, Tai, Zhu, Xinge, Pang, Jiangmiao, Lin, Dahua
Monocular 3D object detection is an important task for autonomous driving considering its advantage of low cost. It is much more challenging compared to conventional 2D case due to its inherent ill-posed property, which is mainly reflected on the lack of depth information. Recent progress on 2D detection offers opportunities to better solving this problem. However, it is non-trivial to make a general adapted 2D detector work in this 3D task. In this technical report, we study this problem with a practice built on fully convolutional single-stage detector and propose a general framework FCOS3D. Specifically, we first transform the commonly defined 7-DoF 3D targets to image domain and decouple it as 2D and 3D attributes. Then the objects are distributed to different feature levels with the consideration of their 2D scales and assigned only according to the projected 3D-center for training procedure. Furthermore, the center-ness is redefined with a 2D Guassian distribution based on the 3D-center to fit the 3D target formulation. All of these make this framework simple yet effective, getting rid of any 2D detection or 2D-3D correspondence priors. Our solution achieves 1st place out of all the vision-only methods in the nuScenes 3D detection challenge of NeurIPS 2020. Code and models are released at https://github.com/open-mmlab/mmdetection3d.
Conditional Selective Inference for Robust Regression and Outlier Detection using Piecewise-Linear Homotopy Continuation
Tsukurimichi, Toshiaki, Inatsu, Yu, Duy, Vo Nguyen Le, Takeuchi, Ichiro
In practical data analysis under noisy environment, it is common to first use robust methods to identify outliers, and then to conduct further analysis after removing the outliers. In this paper, we consider statistical inference of the model estimated after outliers are removed, which can be interpreted as a selective inference (SI) problem. To use conditional SI framework, it is necessary to characterize the events of how the robust method identifies outliers. Unfortunately, the existing methods cannot be directly used here because they are applicable to the case where the selection events can be represented by linear/quadratic constraints. In this paper, we propose a conditional SI method for popular robust regressions by using homotopy method. We show that the proposed conditional SI method is applicable to a wide class of robust regression and outlier detection methods and has good empirical performance on both synthetic data and real data experiments.
Discovering Classification Rules for Interpretable Learning with Linear Programming
Akyüz, M. Hakan, Birbil, Ş. İlker
Rules embody a set of if-then statements which include one or more conditions to classify a subset of samples in a dataset. In various applications such classification rules are considered to be interpretable by the decision makers. We introduce two new algorithms for interpretability and learning. Both algorithms take advantage of linear programming, and hence, they are scalable to large data sets. The first algorithm extracts rules for interpretation of trained models that are based on tree/rule ensembles. The second algorithm generates a set of classification rules through a column generation approach. The proposed algorithms return a set of rules along with their optimal weights indicating the importance of each rule for classification. Moreover, our algorithms allow assigning cost coefficients, which could relate to different attributes of the rules, such as; rule lengths, estimator weights, number of false negatives, and so on. Thus, the decision makers can adjust these coefficients to divert the training process and obtain a set of rules that are more appealing for their needs. We have tested the performances of both algorithms on a collection of datasets and presented a case study to elaborate on optimal rule weights. Our results show that a good compromise between interpretability and accuracy can be obtained by the proposed algorithms.