Performance Analysis
Non-Imaging Medical Data Synthesis for Trustworthy AI: A Comprehensive Survey
Xing, Xiaodan, Wu, Huanjun, Wang, Lichao, Stenson, Iain, Yong, May, Del Ser, Javier, Walsh, Simon, Yang, Guang
Data quality is the key factor for the development of trustworthy AI in healthcare. A large volume of curated datasets with controlled confounding factors can help improve the accuracy, robustness and privacy of downstream AI algorithms. However, access to good quality datasets is limited by the technical difficulty of data acquisition and large-scale sharing of healthcare data is hindered by strict ethical restrictions. Data synthesis algorithms, which generate data with a similar distribution as real clinical data, can serve as a potential solution to address the scarcity of good quality data during the development of trustworthy AI. However, state-of-the-art data synthesis algorithms, especially deep learning algorithms, focus more on imaging data while neglecting the synthesis of non-imaging healthcare data, including clinical measurements, medical signals and waveforms, and electronic healthcare records (EHRs). Thus, in this paper, we will review the synthesis algorithms, particularly for non-imaging medical data, with the aim of providing trustworthy AI in this domain. This tutorial-styled review paper will provide comprehensive descriptions of non-imaging medical data synthesis on aspects including algorithms, evaluations, limitations and future research directions.
EMaP: Explainable AI with Manifold-based Perturbations
Vu, Minh N., Mai, Huy Q., Thai, My T.
In the last few years, many explanation methods based on the perturbations of input data have been introduced to improve our understanding of decisions made by black-box models. The goal of this work is to introduce a novel perturbation scheme so that more faithful and robust explanations can be obtained. Our study focuses on the impact of perturbing directions on the data topology. We show that perturbing along the orthogonal directions of the input manifold better preserves the data topology, both in the worst-case analysis of the discrete Gromov-Hausdorff distance and in the average-case analysis via persistent homology. From those results, we introduce EMaP algorithm, realizing the orthogonal perturbation scheme. Our experiments show that EMaP not only improves the explainers' performance but also helps them overcome a recently-developed attack against perturbation-based methods.
Introspective Learning : A Two-Stage Approach for Inference in Neural Networks
Prabhushankar, Mohit, AlRegib, Ghassan
In this paper, we advocate for two stages in a neural network's decision making process. The first is the existing feed-forward inference framework where patterns in given data are sensed and associated with previously learned patterns. The second stage is a slower reflection stage where we ask the network to reflect on its feed-forward decision by considering and evaluating all available choices. Together, we term the two stages as introspective learning. We use gradients of trained neural networks as a measurement of this reflection. A simple three-layered Multi Layer Perceptron is used as the second stage that predicts based on all extracted gradient features. We perceptually visualize the post-hoc explanations from both stages to provide a visual grounding to introspection. For the application of recognition, we show that an introspective network is 4% more robust and 42% less prone to calibration errors when generalizing to noisy data. We also illustrate the value of introspective networks in downstream tasks that require generalizability and calibration including active learning, out-of-distribution detection, and uncertainty estimation. Finally, we ground the proposed machine introspection to human introspection for the application of image quality assessment.
AdaCC: Cumulative Cost-Sensitive Boosting for Imbalanced Classification
Iosifidis, Vasileios, Papadopoulos, Symeon, Rosenhahn, Bodo, Ntoutsi, Eirini
Class imbalance poses a major challenge for machine learning as most supervised learning models might exhibit bias towards the majority class and under-perform in the minority class. Cost-sensitive learning tackles this problem by treating the classes differently, formulated typically via a user-defined fixed misclassification cost matrix provided as input to the learner. Such parameter tuning is a challenging task that requires domain knowledge and moreover, wrong adjustments might lead to overall predictive performance deterioration. In this work, we propose a novel cost-sensitive boosting approach for imbalanced data that dynamically adjusts the misclassification costs over the boosting rounds in response to model's performance instead of using a fixed misclassification cost matrix. Our method, called AdaCC, is parameter-free as it relies on the cumulative behavior of the boosting model in order to adjust the misclassification costs for the next boosting round and comes with theoretical guarantees regarding the training error. Experiments on 27 real-world datasets from different domains with high class imbalance demonstrate the superiority of our method over 12 state-of-the-art cost-sensitive boosting approaches exhibiting consistent improvements in different measures, for instance, in the range of [0.3%-28.56%] for AUC, [3.4%-21.4%] for balanced accuracy, [4.8%-45%] for gmean and [7.4%-85.5%] for recall.
Non-Hyperaemic Assessment of Coronary Ischaemia – Application of Machine Learning Techniques
James N Cameron and Andrea Comella contributed equally to this work. Hyperaemic and non-hyperaemic pressure ratios (NHPR) are routinely used to identify significant coronary lesions. Machine Learning (ML) techniques may help better understand these indices and guide future practice. This study assessed the ability of a purpose-built ML algorithm to classify coronary ischaemia during non-hyperaemia compared with the existing gold-standard technique (Fractional flow reserve, FFR). Further, it investigated whether ML could identify components of coronary and aortic pressure cycles indicative of ischaemia. FFR measurements were obtained from the right coronary artery (13), left anterior descending (46), left circumflex (11), left main (1), obtuse marginal (2) and diagonal (4).
Operationalizing Machine Learning: An Interview Study
Shankar, Shreya, Garcia, Rolando, Hellerstein, Joseph M., Parameswaran, Aditya G.
Organizations rely on machine learning engineers (MLEs) to operationalize ML, i.e., deploy and maintain ML pipelines in production. The process of operationalizing ML, or MLOps, consists of a continual loop of (i) data collection and labeling, (ii) experimentation to improve ML performance, (iii) evaluation throughout a multi-staged deployment process, and (iv) monitoring of performance drops in production. When considered together, these responsibilities seem staggering -- how does anyone do MLOps, what are the unaddressed challenges, and what are the implications for tool builders? We conducted semi-structured ethnographic interviews with 18 MLEs working across many applications, including chatbots, autonomous vehicles, and finance. Our interviews expose three variables that govern success for a production ML deployment: Velocity, Validation, and Versioning. We summarize common practices for successful ML experimentation, deployment, and sustaining production performance. Finally, we discuss interviewees' pain points and anti-patterns, with implications for tool design.
BayesBeat: Reliable Atrial Fibrillation Detection from Noisy Photoplethysmography Data
Das, Sarkar Snigdha Sarathi, Shanto, Subangkar Karmaker, Rahman, Masum, Islam, Md. Saiful, Rahman, Atif, Masud, Mohammad Mehedy, Ali, Mohammed Eunus
Smartwatches or fitness trackers have garnered a lot of popularity as potential health tracking devices due to their affordable and longitudinal monitoring capabilities. To further widen their health tracking capabilities, in recent years researchers have started to look into the possibility of Atrial Fibrillation (AF) detection in real-time leveraging photoplethysmography (PPG) data, an inexpensive sensor widely available in almost all smartwatches. A significant challenge in AF detection from PPG signals comes from the inherent noise in the smartwatch PPG signals. In this paper, we propose a novel deep learning based approach, BayesBeat that leverages the power of Bayesian deep learning to accurately infer AF risks from noisy PPG signals, and at the same time provides an uncertainty estimate of the prediction. Extensive experiments on two publicly available dataset reveal that our proposed method BayesBeat outperforms the existing state-of-the-art methods. Moreover, BayesBeat is substantially more efficient having 40-200X fewer parameters than state-of-the-art baseline approaches making it suitable for deployment in resource constrained wearable devices.
IoT Data Analytics in Dynamic Environments: From An Automated Machine Learning Perspective
With the wide spread of sensors and smart devices in recent years, the data generation speed of the Internet of Things (IoT) systems has increased dramatically. In IoT systems, massive volumes of data must be processed, transformed, and analyzed on a frequent basis to enable various IoT services and functionalities. Machine Learning (ML) approaches have shown their capacity for IoT data analytics. However, applying ML models to IoT data analytics tasks still faces many difficulties and challenges, specifically, effective model selection, design/tuning, and updating, which have brought massive demand for experienced data scientists. Additionally, the dynamic nature of IoT data may introduce concept drift issues, causing model performance degradation. To reduce human efforts, Automated Machine Learning (AutoML) has become a popular field that aims to automatically select, construct, tune, and update machine learning models to achieve the best performance on specified tasks. In this paper, we conduct a review of existing methods in the model selection, tuning, and updating procedures in the area of AutoML in order to identify and summarize the optimal solutions for every step of applying ML algorithms to IoT data analytics. To justify our findings and help industrial users and researchers better implement AutoML approaches, a case study of applying AutoML to IoT anomaly detection problems is conducted in this work. Lastly, we discuss and classify the challenges and research directions for this domain.
AiM: Taking Answers in Mind to Correct Chinese Cloze Tests in Educational Applications
Zhang, Yusen, Li, Zhongli, Zhou, Qingyu, Liu, Ziyi, Li, Chao, Ma, Mina, Cao, Yunbo, Liu, Hongzhi
To automatically correct handwritten assignments, the traditional approach is to use an OCR model to recognize characters and compare them to answers. The OCR model easily gets confused on recognizing handwritten Chinese characters, and the textual information of the answers is missing during the model inference. However, teachers always have these answers in mind to review and correct assignments. In this paper, we focus on the Chinese cloze tests correction and propose a multimodal approach (named AiM). The encoded representations of answers interact with the visual information of students' handwriting. Instead of predicting 'right' or 'wrong', we perform the sequence labeling on the answer text to infer which answer character differs from the handwritten content in a fine-grained way. We take samples of OCR datasets as the positive samples for this task, and develop a negative sample augmentation method to scale up the training data. Experimental results show that AiM outperforms OCR-based methods by a large margin. Extensive studies demonstrate the effectiveness of our multimodal approach.
Active Learning for Computationally Efficient Distribution of Binary Evolution Simulations
Rocha, Kyle Akira, Andrews, Jeff J., Berry, Christopher P. L., Doctor, Zoheyr, Katsaggelos, Aggelos K., Pérez, Juan Gabriel Serra, Marchant, Pablo, Kalogera, Vicky, Coughlin, Scott, Bavera, Simone S., Dotter, Aaron, Fragos, Tassos, Kovlakas, Konstantinos, Misra, Devina, Xing, Zepei, Zapartas, Emmanouil
Binary stars undergo a variety of interactions and evolutionary phases, critical for predicting and explaining observed properties. Binary population synthesis with full stellar-structure and evolution simulations are computationally expensive requiring a large number of mass-transfer sequences. The recently developed binary population synthesis code POSYDON incorporates grids of MESA binary star simulations which are then interpolated to model large-scale populations of massive binaries. The traditional method of computing a high-density rectilinear grid of simulations is not scalable for higher-dimension grids, accounting for a range of metallicities, rotation, and eccentricity. We present a new active learning algorithm, psy-cris, which uses machine learning in the data-gathering process to adaptively and iteratively select targeted simulations to run, resulting in a custom, high-performance training set. We test psy-cris on a toy problem and find the resulting training sets require fewer simulations for accurate classification and regression than either regular or randomly sampled grids. We further apply psy-cris to the target problem of building a dynamic grid of MESA simulations, and we demonstrate that, even without fine tuning, a simulation set of only $\sim 1/4$ the size of a rectilinear grid is sufficient to achieve the same classification accuracy. We anticipate further gains when algorithmic parameters are optimized for the targeted application. We find that optimizing for classification only may lead to performance losses in regression, and vice versa. Lowering the computational cost of producing grids will enable future versions of POSYDON to cover more input parameters while preserving interpolation accuracies.