The adoption of machine learning in applications where it is crucial to ensure fairness and accountability has led to a large number of model proposals in the literature, largely formulated as optimisation problems with constraints reducing or eliminating the effect of sensitive attributes on the response. While this approach is very flexible from a theoretical perspective, the resulting models are somewhat black-box in nature: very little can be said about their statistical properties, what are the best practices in their applied use, and how they can be extended to problems other than those they were originally designed for. Furthermore, the estimation of each model requires a bespoke implementation involving an appropriate solver which is less than desirable from a software engineering perspective. In this paper, we describe the fairml R package which implements our previous work (Scutari, Panero, and Proissl 2022) and related models in the literature. fairml is designed around classical statistical models (generalised linear models) and penalised regression results (ridge regression) to produce fair models that are interpretable and whose properties are well-known. The constraint used to enforce fairness is orthogonal to model estimation, making it possible to mix-and-match the desired model family and fairness definition for each application. Furthermore, fairml provides facilities for model estimation, model selection and validation including diagnostic plots.

Breast cancer is one of the most threatening diseases in women's life; thus, the early and accurate diagnosis plays a key role in reducing the risk of death in a patient's life. Mammography stands as the reference technique for breast cancer screening; nevertheless, many countries still lack access to mammograms due to economic, social, and cultural issues. Latest advances in computational tools, infrared cameras and devices for bio-impedance quantification, have given a chance to emerge other reference techniques like thermography, infrared thermography, electrical impedance tomography and biomarkers found in blood tests, therefore being faster, reliable and cheaper than other methods. In the last two decades, the techniques mentioned above have been considered as parallel and extended approaches for breast cancer diagnosis, as well many authors concluded that false positives and false negatives rates are significantly reduced. Moreover, when a screening method works together with a computational technique, it generate a "computer-aided diagnosis" system. The present work aims to review the last breakthroughs about the three techniques mentioned earlier, suggested machine learning techniques for breast cancer diagnosis, thus, describing the benefits of some methods in relation with other ones, such as, logistic regression, decision trees, random forest, deep and convolutional neural networks. With this, we studied several hyper-parameters optimization approaches with parzen tree optimizers to improve the performance of baseline models. An exploratory data analysis for each database and a benchmark of convolutional neural networks for the database of thermal images are presented.

This paper discusses the impact of the Internet on modern trading and the importance of data generated from these transactions for organizations to improve their marketing efforts. The paper uses the example of Divar, an online marketplace for buying and selling products and services in Iran, and presents a competition to predict the percentage of a car sales ad that would be published on the Divar website. Since the dataset provides a rich source of Persian text data, the authors use the Hazm library, a Python library designed for processing Persian text, and two state-of-the-art language models, mBERT and ParsBERT, to analyze it. The paper's primary objective is to compare the performance of mBERT and ParsBERT on the Divar dataset. The authors provide some background on data mining, Persian language, and the two language models, examine the dataset's composition and statistical features, and provide details on their fine-tuning and training configurations for both approaches. They present the results of their analysis and highlight the strengths and weaknesses of the two language models when applied to Persian text data. The paper offers valuable insights into the challenges and opportunities of working with low-resource languages such as Persian and the potential of advanced language models like BERT for analyzing such data. The paper also explains the data mining process, including steps such as data cleaning and normalization techniques. Finally, the paper discusses the types of machine learning problems, such as supervised, unsupervised, and reinforcement learning, and the pattern evaluation techniques, such as confusion matrix. Overall, the paper provides an informative overview of the use of language models and data mining techniques for analyzing text data in low-resource languages, using the example of the Divar dataset.

Computational text phenotyping is the practice of identifying patients with certain disorders and traits from clinical notes. Rare diseases are challenging to be identified due to few cases available for machine learning and the need for data annotation from domain experts. We propose a method using ontologies and weak supervision, with recent pre-trained contextual representations from Bi-directional Transformers (e.g. BERT). The ontology-based framework includes two steps: (i) Text-to-UMLS, extracting phenotypes by contextually linking mentions to concepts in Unified Medical Language System (UMLS), with a Named Entity Recognition and Linking (NER+L) tool, SemEHR, and weak supervision with customised rules and contextual mention representation; (ii) UMLS-to-ORDO, matching UMLS concepts to rare diseases in Orphanet Rare Disease Ontology (ORDO). The weakly supervised approach is proposed to learn a phenotype confirmation model to improve Text-to-UMLS linking, without annotated data from domain experts. We evaluated the approach on three clinical datasets, MIMIC-III discharge summaries, MIMIC-III radiology reports, and NHS Tayside brain imaging reports from two institutions in the US and the UK, with annotations. The improvements in the precision were pronounced (by over 30% to 50% absolute score for Text-to-UMLS linking), with almost no loss of recall compared to the existing NER+L tool, SemEHR. Results on radiology reports from MIMIC-III and NHS Tayside were consistent with the discharge summaries. The overall pipeline processing clinical notes can extract rare disease cases, mostly uncaptured in structured data (manually assigned ICD codes). We discuss the usefulness of the weak supervision approach and propose directions for future studies.

Deep Neural Networks (DNNs) are vulnerable to adversarial examples, while adversarial attack models, e.g., DeepFool, are on the rise and outrunning adversarial example detection techniques. This paper presents a new adversarial example detector that outperforms state-of-the-art detectors in identifying the latest adversarial attacks on image datasets. Specifically, we propose to use sentiment analysis for adversarial example detection, qualified by the progressively manifesting impact of an adversarial perturbation on the hidden-layer feature maps of a DNN under attack. Accordingly, we design a modularized embedding layer with the minimum learnable parameters to embed the hidden-layer feature maps into word vectors and assemble sentences ready for sentiment analysis. Extensive experiments demonstrate that the new detector consistently surpasses the state-of-the-art detection algorithms in detecting the latest attacks launched against ResNet and Inception neutral networks on the CIFAR-10, CIFAR-100 and SVHN datasets. The detector only has about 2 million parameters, and takes shorter than 4.6 milliseconds to detect an adversarial example generated by the latest attack models using a Tesla K80 GPU card.

Birds are important indicators for monitoring both biodiversity and habitat health; they also play a crucial role in ecosystem management. Decline in bird populations can result in reduced eco-system services, including seed dispersal, pollination and pest control. Accurate and long-term monitoring of birds to identify species of concern while measuring the success of conservation interventions is essential for ecologists. However, monitoring is time consuming, costly and often difficult to manage over long durations and at meaningfully large spatial scales. Technology such as camera traps, acoustic monitors and drones provide methods for non-invasive monitoring. There are two main problems with using camera traps for monitoring: a) cameras generate many images, making it difficult to process and analyse the data in a timely manner; and b) the high proportion of false positives hinders the processing and analysis for reporting. In this paper, we outline an approach for overcoming these issues by utilising deep learning for real-time classi-fication of bird species and automated removal of false positives in camera trap data. Images are classified in real-time using a Faster-RCNN architecture. Images are transmitted over 3/4G cam-eras and processed using Graphical Processing Units (GPUs) to provide conservationists with key detection metrics therefore removing the requirement for manual observations. Our models achieved an average sensitivity of 88.79%, a specificity of 98.16% and accuracy of 96.71%. This demonstrates the effectiveness of using deep learning for automatic bird monitoring.

Motivation: Machine learning methods can be used to support scientific discovery in healthcare-related research fields. However, these methods can only be reliably used if they can be trained on high-quality and curated datasets. Currently, no such dataset for the exploration of Plasmodium falciparum protein antigen candidates exists. The parasite Plasmodium falciparum causes the infectious disease malaria. Thus, identifying potential antigens is of utmost importance for the development of antimalarial drugs and vaccines. Since exploring antigen candidates experimentally is an expensive and time-consuming process, applying machine learning methods to support this process has the potential to accelerate the development of drugs and vaccines, which are needed for fighting and controlling malaria. Results: We developed PlasmoFAB, a curated benchmark that can be used to train machine learning methods for the exploration of Plasmodium falciparum protein antigen candidates. We combined an extensive literature search with domain expertise to create high-quality labels for Plasmodium falciparum specific proteins that distinguish between antigen candidates and intracellular proteins. Additionally, we used our benchmark to compare different well-known prediction models and available protein localization prediction services on the task of identifying protein antigen candidates. We show that available general-purpose services are unable to provide sufficient performance on identifying protein antigen candidates and are outperformed by our models that were trained on this tailored data. Availability: PlasmoFAB is publicly available on Zenodo with DOI 10.5281/zenodo.7433087. Furthermore, all scripts that were used in the creation of PlasmoFAB and the training and evaluation of machine learning models are open source and publicly available on GitHub here: https://github.com/msmdev/PlasmoFAB.

We study the challenging task of malware recognition on both known and novel unknown malware families, called malware open-set recognition (MOSR). Previous works usually assume the malware families are known to the classifier in a close-set scenario, i.e., testing families are the subset or at most identical to training families. However, novel unknown malware families frequently emerge in real-world applications, and as such, require to recognize malware instances in an open-set scenario, i.e., some unknown families are also included in the test-set, which has been rarely and non-thoroughly investigated in the cyber-security domain. One practical solution for MOSR may consider jointly classifying known and detecting unknown malware families by a single classifier (e.g., neural network) from the variance of the predicted probability distribution on known families. However, conventional well-trained classifiers usually tend to obtain overly high recognition probabilities in the outputs, especially when the instance feature distributions are similar to each other, e.g., unknown v.s. known malware families, and thus dramatically degrades the recognition on novel unknown malware families. In this paper, we propose a novel model that can conservatively synthesize malware instances to mimic unknown malware families and support a more robust training of the classifier. Moreover, we also build a new large-scale malware dataset, named MAL-100, to fill the gap of lacking large open-set malware benchmark dataset. Experimental results on two widely used malware datasets and our MAL-100 demonstrate the effectiveness of our model compared with other representative methods.

We employ Natural Language Processing techniques to analyse 377808 English song lyrics from the "Two Million Song Database" corpus, focusing on the expression of sexism across five decades (1960-2010) and the measurement of gender biases. Using a sexism classifier, we identify sexist lyrics at a larger scale than previous studies using small samples of manually annotated popular songs. Furthermore, we reveal gender biases by measuring associations in word embeddings learned on song lyrics. We find sexist content to increase across time, especially from male artists and for popular songs appearing in Billboard charts. Songs are also shown to contain different language biases depending on the gender of the performer, with male solo artist songs containing more and stronger biases. This is the first large scale analysis of this type, giving insights into language usage in such an influential part of popular culture.

Deep neural networks (DNNs) with a step-by-step introduction of inputs, which is constructed by imitating the somatosensory system in human body, known as SpinalNet have been implemented in this work on a Galaxy Zoo dataset. The input segmentation in SpinalNet has enabled the intermediate layers to take some of the inputs as well as output of preceding layers thereby reducing the amount of the collected weights in the intermediate layers. As a result of these, the authors of SpinalNet reported to have achieved in most of the DNNs they tested, not only a remarkable cut in the error but also in the large reduction of the computational costs. Having applied it to the Galaxy Zoo dataset, we are able to classify the different classes and/or sub-classes of the galaxies. Thus, we have obtained higher classification accuracies of 98.2, 95 and 82 percents between elliptical and spirals, between these two and irregulars, and between 10 sub-classes of galaxies, respectively.