Accuracy
The unreasonable effectiveness of AI CADe polyp detectors to generalize to new countries
Shor, Joel, Yamano, Hiro-o, Tsurumaru, Daisuke, Intrator, Yotami, Kayama, Hiroki, Ledsam, Joe, Hamabe, Atsushi, Ando, Koji, Ota, Mitsuhiko, Ogino, Haruei, Nakase, Hiroshi, Kobayashi, Kaho, Oki, Eiji, Goldenberg, Roman, Rivlin, Ehud, Takemasa, Ichiro
$\textbf{Background and aims}$: Artificial Intelligence (AI) Computer-Aided Detection (CADe) is commonly used for polyp detection, but data seen in clinical settings can differ from model training. Few studies evaluate how well CADe detectors perform on colonoscopies from countries not seen during training, and none are able to evaluate performance without collecting expensive and time-intensive labels. $\textbf{Methods}$: We trained a CADe polyp detector on Israeli colonoscopy videos (5004 videos, 1106 hours) and evaluated on Japanese videos (354 videos, 128 hours) by measuring the True Positive Rate (TPR) versus false alarms per minute (FAPM). We introduce a colonoscopy dissimilarity measure called "MAsked mediCal Embedding Distance" (MACE) to quantify differences between colonoscopies, without labels. We evaluated CADe on all Japan videos and on those with the highest MACE. $\textbf{Results}$: MACE correctly quantifies that narrow-band imaging (NBI) and chromoendoscopy (CE) frames are less similar to Israel data than Japan whitelight (bootstrapped z-test, |z| > 690, p < $10^{-8}$ for both). Despite differences in the data, CADe performance on Japan colonoscopies was non-inferior to Israel ones without additional training (TPR at 0.5 FAPM: 0.957 and 0.972 for Israel and Japan; TPR at 1.0 FAPM: 0.972 and 0.989 for Israel and Japan; superiority test t > 45.2, p < $10^{-8}$). Despite not being trained on NBI or CE, TPR on those subsets were non-inferior to Japan overall (non-inferiority test t > 47.3, p < $10^{-8}$, $\delta$ = 1.5% for both). $\textbf{Conclusion}$: Differences that prevent CADe detectors from performing well in non-medical settings do not degrade the performance of our AI CADe polyp detector when applied to data from a new country. MACE can help medical AI models internationalize by identifying the most "dissimilar" data on which to evaluate models.
GLOBE-CE: A Translation-Based Approach for Global Counterfactual Explanations
Ley, Dan, Mishra, Saumitra, Magazzeni, Daniele
Counterfactual explanations have been widely studied in explainability, with a range of application dependent methods prominent in fairness, recourse and model understanding. The major shortcoming associated with these methods, however, is their inability to provide explanations beyond the local or instance-level. While many works touch upon the notion of a global explanation, typically suggesting to aggregate masses of local explanations in the hope of ascertaining global properties, few provide frameworks that are both reliable and computationally tractable. Meanwhile, practitioners are requesting more efficient and interactive explainability tools. We take this opportunity to propose Global & Efficient Counterfactual Explanations (GLOBE-CE), a flexible framework that tackles the reliability and scalability issues associated with current state-of-the-art, particularly on higher dimensional datasets and in the presence of continuous features. Furthermore, we provide a unique mathematical analysis of categorical feature translations, utilising it in our method. Experimental evaluation with publicly available datasets and user studies demonstrate that GLOBE-CE performs significantly better than the current state-of-the-art across multiple metrics (e.g., speed, reliability).
A novel multi-layer modular approach for real-time fuzzy-identification of gravitational-wave signals
Barone, Francesco Pio, Dell'Aquila, Daniele, Russo, Marco
Advanced LIGO and Advanced Virgo ground-based interferometers are instruments capable to detect gravitational wave signals exploiting advanced laser interferometry techniques. The underlying data analysis task consists in identifying specific patterns in noisy timeseries, but it is made extremely complex by the incredibly small amplitude of the target signals. In this scenario, the development of effective gravitational wave detection algorithms is crucial. We propose a novel layered framework for real-time detection of gravitational waves inspired by speech processing techniques and, in the present implementation, based on a state-of-the-art machine learning approach involving a hybridization of genetic programming and neural networks. The key aspects of the newly proposed framework are: the well structured, layered approach, and the low computational complexity. The paper describes the basic concepts of the framework and the derivation of the first three layers. Even if the layers are based on models derived using a machine learning approach, the proposed layered structure has a universal nature. Compared to more complex approaches, such as convolutional neural networks, which comprise a parameter set of several tens of MB and were tested exclusively for fixed length data samples, our framework has lower accuracy (e.g., it identifies 45% of low signal-to-noise-ration gravitational wave signals, against 65% of the state-of-the-art, at a false alarm probability of $10^{-2}$), but has a much lower computational complexity and a higher degree of modularity. Furthermore, the exploitation of short-term features makes the results of the new framework virtually independent against time-position of gravitational wave signals, simplifying its future exploitation in real-time multi-layer pipelines for gravitational-wave detection with new generation interferometers.
Prediction of Crash Injury Severity in Florida's Interstate-95
Anik, B M Tazbiul Hassan, Rashid, Md Mobasshir, Ahsan, Md Jamil
Drivers can sustain serious injuries in traffic accidents. In this study, traffic crashes on Florida's Interstate-95 from 2016 to 2021 were gathered, and several classification methods were used to estimate the severity of driver injuries. In the feature selection method, logistic regression was applied. To compare model performances, various model assessment matrices such as accuracy, recall, and area under curve (AUC) were developed. The Adaboost algorithm outperformed the others in terms of recall and AUC. SHAP values were also generated to explain the classification model's results. This analytical study can be used to examine factors that contribute to the severity of driver injuries in crashes.
Fusion of Deep and Shallow Features for Face Kinship Verification
Ouanas, Belabbaci El, Mohammed, Khammari, Ammar, Chouchane, Bessaoudi, Mohcene, Ouamane, Abdelmalik, Gharbi, Akram Abderraouf
Retinex (MSR), which enhances image quality. MSIDA typically performs the projection of the input region tensor into a novel multilinear The objective of kinship verification from face images is to subspace, which results in an increased distance between ascertain the biological relationship between two individuals samples belonging to different classes and a decreased distance by analyzing their faces appearances [1].
Best practices for machine learning in antibody discovery and development
Wossnig, Leonard, Furtmann, Norbert, Buchanan, Andrew, Kumar, Sandeep, Greiff, Victor
Over the past 40 years, the discovery and development of therapeutic antibodies to treat disease has become common practice. However, as therapeutic antibody constructs are becoming more sophisticated (e.g., multi-specifics), conventional approaches to optimisation are increasingly inefficient. Machine learning (ML) promises to open up an in silico route to antibody discovery and help accelerate the development of drug products using a reduced number of experiments and hence cost. Over the past few years, we have observed rapid developments in the field of ML-guided antibody discovery and development (D&D). However, many of the results are difficult to compare or hard to assess for utility by other experts in the field due to the high diversity in the datasets and evaluation techniques and metrics that are across industry and academia. This limitation of the literature curtails the broad adoption of ML across the industry and slows down overall progress in the field, highlighting the need to develop standards and guidelines that may help improve the reproducibility of ML models across different research groups. To address these challenges, we set out in this perspective to critically review current practices, explain common pitfalls, and clearly define a set of method development and evaluation guidelines that can be applied to different types of ML-based techniques for therapeutic antibody D&D. Specifically, we address in an end-to-end analysis, challenges associated with all aspects of the ML process and recommend a set of best practices for each stage.
Towards Reliable Dermatology Evaluation Benchmarks
Gröger, Fabian, Lionetti, Simone, Gottfrois, Philippe, Gonzalez-Jimenez, Alvaro, Groh, Matthew, Daneshjou, Roxana, Consortium, Labelling, Navarini, Alexander A., Pouly, Marc
Benchmark datasets for digital dermatology unwittingly contain inaccuracies that reduce trust in model performance estimates. We propose a resource-efficient data-cleaning protocol to identify issues that escaped previous curation. The protocol leverages an existing algorithmic cleaning strategy and is followed by a confirmation process terminated by an intuitive stopping criterion. Based on confirmation by multiple dermatologists, we remove irrelevant samples and near duplicates and estimate the percentage of label errors in six dermatology image datasets for model evaluation promoted by the International Skin Imaging Collaboration. Along with this paper, we publish revised file lists for each dataset which should be used for model evaluation. Our work paves the way for more trustworthy performance assessment in digital dermatology.
Stethoscope-guided Supervised Contrastive Learning for Cross-domain Adaptation on Respiratory Sound Classification
Kim, June-Woo, Bae, Sangmin, Cho, Won-Yang, Lee, Byungjo, Jung, Ho-Young
Despite the remarkable advances in deep learning technology, achieving satisfactory performance in lung sound classification remains a challenge due to the scarcity of available data. Moreover, the respiratory sound samples are collected from a variety of electronic stethoscopes, which could potentially introduce biases into the trained models. When a significant distribution shift occurs within the test dataset or in a practical scenario, it can substantially decrease the performance. To tackle this issue, we introduce cross-domain adaptation techniques, which transfer the knowledge from a source domain to a distinct target domain. In particular, by considering different stethoscope types as individual domains, we propose a novel stethoscope-guided supervised contrastive learning approach. This method can mitigate any domain-related disparities and thus enables the model to distinguish respiratory sounds of the recording variation of the stethoscope. The experimental results on the ICBHI dataset demonstrate that the proposed methods are effective in reducing the domain dependency and achieving the ICBHI Score of 61.71%, which is a significant improvement of 2.16% over the baseline.
Asset Ownership Identification: Using machine learning to predict enterprise asset ownership
Asset owner identification is an important first step for any information security organization, allowing organizations the ability to identify and detect data breaches and losses, vulnerabilities, possible attack surfaces, and define effective countermeasures. Using existing asset ownership data, the research utilized an assortment of machine learning algorithms to determine the best classification model to predict an asset's owner. The research ran separate analyses for each enumerated team, then ran a 100 iteration Monte Carlo Cross Validation across Adaboost, Logistic Regression, Naive Bayes, Classification and Regression Trees, and Random Forests. Finally, a visualization dashboard was created to help users understand the asset inventory through interactive exploratory data analysis as well as the ability to understand model evaluation metrics including accuracy, sensitivity, and specificity for each model. Overall, Adaboost performed the best across all owners with low testing errors below 5% while Naive Bayes performed the worst. The remaining models performed similarly. The fully qualified domain name (FQDN), Classless Inter-Domain Routing (CIDR) CIDR/16, and location were among the most important features.
Do Text Simplification Systems Preserve Meaning? A Human Evaluation via Reading Comprehension
Agrawal, Sweta, Carpuat, Marine
Automatic text simplification (TS) aims to automate the process of rewriting text to make it easier for people to read. A pre-requisite for TS to be useful is that it should convey information that is consistent with the meaning of the original text. However, current TS evaluation protocols assess system outputs for simplicity and meaning preservation without regard for the document context in which output sentences occur and for how people understand them. In this work, we introduce a human evaluation framework to assess whether simplified texts preserve meaning using reading comprehension questions. With this framework, we conduct a thorough human evaluation of texts by humans and by nine automatic systems. Supervised systems that leverage pre-training knowledge achieve the highest scores on the reading comprehension (RC) tasks amongst the automatic controllable TS systems. However, even the best-performing supervised system struggles with at least 14% of the questions, marking them as "unanswerable'' based on simplified content. We further investigate how existing TS evaluation metrics and automatic question-answering systems approximate the human judgments we obtained.