Accuracy
Experimental demonstration of magnetic tunnel junction-based computational random-access memory
Lv, Yang, Zink, Brandon R., Bloom, Robert P., Cılasun, Hüsrev, Khanal, Pravin, Resch, Salonik, Chowdhury, Zamshed, Habiboglu, Ali, Wang, Weigang, Sapatnekar, Sachin S., Karpuczu, Ulya, Wang, Jian-Ping
Conventional computing paradigm struggles to fulfill the rapidly growing demands from emerging applications, especially those for machine intelligence, because much of the power and energy is consumed by constant data transfers between logic and memory modules. A new paradigm, called "computational random-access memory (CRAM)" has emerged to address this fundamental limitation. CRAM performs logic operations directly using the memory cells themselves, without having the data ever leave the memory. The energy and performance benefits of CRAM for both conventional and emerging applications have been well established by prior numerical studies. However, there lacks an experimental demonstration and study of CRAM to evaluate its computation accuracy, which is a realistic and application-critical metrics for its technological feasibility and competitiveness. In this work, a CRAM array based on magnetic tunnel junctions (MTJs) is experimentally demonstrated. First, basic memory operations as well as 2-, 3-, and 5-input logic operations are studied. Then, a 1-bit full adder with two different designs is demonstrated. Based on the experimental results, a suite of modeling has been developed to characterize the accuracy of CRAM computation. Further analysis of scalar addition, multiplication, and matrix multiplication shows promising results. These results are then applied to a complete application: a neural network based handwritten digit classifier, as an example to show the connection between the application performance and further MTJ development. The classifier achieved almost-perfect classification accuracy, with reasonable projections of future MTJ development. With the confirmation of MTJ-based CRAM's accuracy, there is a strong case that this technology will have a significant impact on power- and energy-demanding applications of machine intelligence.
Noninvasive Estimation of Mean Pulmonary Artery Pressure Using MRI, Computer Models, and Machine Learning
Grzeszczyk, Michal K., Satlawa, Tadeusz, Lungu, Angela, Swift, Andrew, Narracott, Andrew, Hose, Rod, Trzcinski, Tomasz, Sitek, Arkadiusz
Pulmonary Hypertension (PH) is a severe disease characterized by an elevated pulmonary artery pressure. The gold standard for PH diagnosis is measurement of mean Pulmonary Artery Pressure (mPAP) during an invasive Right Heart Catheterization. In this paper, we investigate noninvasive approach to PH detection utilizing Magnetic Resonance Imaging, Computer Models and Machine Learning. We show using the ablation study, that physics-informed feature engineering based on models of blood circulation increases the performance of Gradient Boosting Decision Trees-based algorithms for classification of PH and regression of values of mPAP. We compare results of regression (with thresholding of estimated mPAP) and classification and demonstrate that metrics achieved in both experiments are comparable. The predicted mPAP values are more informative to the physicians than the probability of PH returned by classification models. They provide the intuitive explanation of the outcome of the machine learning model (clinicians are accustomed to the mPAP metric, contrary to the PH probability).
Single-Cell RNA-seq Synthesis with Latent Diffusion Model
Wang, Yixuan, Li, Shuangyin, DI, Shimin, Chen, Lei
The single-cell RNA sequencing (scRNA-seq) technology enables researchers to study complex biological systems and diseases with high resolution. The central challenge is synthesizing enough scRNA-seq samples; insufficient samples can impede downstream analysis and reproducibility. While various methods have been attempted in past research, the resulting scRNA-seq samples were often of poor quality or limited in terms of useful specific cell subpopulations. To address these issues, we propose a novel method called Single-Cell Latent Diffusion (SCLD) based on the Diffusion Model. This method is capable of synthesizing large-scale, high-quality scRNA-seq samples, including both 'holistic' or targeted specific cellular subpopulations within a unified framework. A pre-guidance mechanism is designed for synthesizing specific cellular subpopulations, while a post-guidance mechanism aims to enhance the quality of scRNA-seq samples. The SCLD can synthesize large-scale and high-quality scRNA-seq samples for various downstream tasks. Our experimental results demonstrate state-of-the-art performance in cell classification and data distribution distances when evaluated on two scRNA-seq benchmarks. Additionally, visualization experiments show the SCLD's capability in synthesizing specific cellular subpopulations.
Metalearning with Very Few Samples Per Task
Aliakbarpour, Maryam, Bairaktari, Konstantina, Brown, Gavin, Smith, Adam, Ullman, Jonathan
Metalearning and multitask learning are two frameworks for solving a group of related learning tasks more efficiently than we could hope to solve each of the individual tasks on their own. In multitask learning, we are given a fixed set of related learning tasks and need to output one accurate model per task, whereas in metalearning we are given tasks that are drawn i.i.d. from a metadistribution and need to output some common information that can be easily specialized to new, previously unseen tasks from the metadistribution. In this work, we consider a binary classification setting where tasks are related by a shared representation, that is, every task $P$ of interest can be solved by a classifier of the form $f_{P} \circ h$ where $h \in H$ is a map from features to some representation space that is shared across tasks, and $f_{P} \in F$ is a task-specific classifier from the representation space to labels. The main question we ask in this work is how much data do we need to metalearn a good representation? Here, the amount of data is measured in terms of both the number of tasks $t$ that we need to see and the number of samples $n$ per task. We focus on the regime where the number of samples per task is extremely small. Our main result shows that, in a distribution-free setting where the feature vectors are in $\mathbb{R}^d$, the representation is a linear map from $\mathbb{R}^d \to \mathbb{R}^k$, and the task-specific classifiers are halfspaces in $\mathbb{R}^k$, we can metalearn a representation with error $\varepsilon$ using just $n = k+2$ samples per task, and $d \cdot (1/\varepsilon)^{O(k)}$ tasks. Learning with so few samples per task is remarkable because metalearning would be impossible with $k+1$ samples per task, and because we cannot even hope to learn an accurate task-specific classifier with just $k+2$ samples per task.
Data-driven path collective variables
France-Lanord, Arthur, Vroylandt, Hadrien, Salanne, Mathieu, Rotenberg, Benjamin, Saitta, A. Marco, Pietrucci, Fabio
Identifying optimal collective variables to model transformations, using atomic-scale simulations, is a long-standing challenge. We propose a new method for the generation, optimization, and comparison of collective variables, which can be thought of as a data-driven generalization of the path collective variable concept. It consists in a kernel ridge regression of the committor probability, which encodes a transformation's progress. The resulting collective variable is one-dimensional, interpretable, and differentiable, making it appropriate for enhanced sampling simulations requiring biasing. We demonstrate the validity of the method on two different applications: a precipitation model, and the association of Li$^+$ and F$^-$ in water. For the former, we show that global descriptors such as the permutation invariant vector allow to reach an accuracy far from the one achieved \textit{via} simpler, more intuitive variables. For the latter, we show that information correlated with the transformation mechanism is contained in the first solvation shell only, and that inertial effects prevent the derivation of optimal collective variables from the atomic positions only.
Hunting imaging biomarkers in pulmonary fibrosis: Benchmarks of the AIIB23 challenge
Nan, Yang, Xing, Xiaodan, Wang, Shiyi, Tang, Zeyu, Felder, Federico N, Zhang, Sheng, Ledda, Roberta Eufrasia, Ding, Xiaoliu, Yu, Ruiqi, Liu, Weiping, Shi, Feng, Sun, Tianyang, Cao, Zehong, Zhang, Minghui, Gu, Yun, Zhang, Hanxiao, Gao, Jian, Tang, Wen, Yu, Pengxin, Kang, Han, Chen, Junqiang, Lu, Xing, Zhang, Boyu, Mamalakis, Michail, Prinzi, Francesco, Carlini, Gianluca, Cuneo, Lisa, Banerjee, Abhirup, Xing, Zhaohu, Zhu, Lei, Mesbah, Zacharia, Jain, Dhruv, Mayet, Tsiry, Yuan, Hongyu, Lyu, Qing, Wells, Athol, Walsh, Simon LF, Yang, Guang
Airway-related quantitative imaging biomarkers are crucial for examination, diagnosis, and prognosis in pulmonary diseases. However, the manual delineation of airway trees remains prohibitively time-consuming. While significant efforts have been made towards enhancing airway modelling, current public-available datasets concentrate on lung diseases with moderate morphological variations. The intricate honeycombing patterns present in the lung tissues of fibrotic lung disease patients exacerbate the challenges, often leading to various prediction errors. To address this issue, the 'Airway-Informed Quantitative CT Imaging Biomarker for Fibrotic Lung Disease 2023' (AIIB23) competition was organized in conjunction with the official 2023 International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI). The airway structures were meticulously annotated by three experienced radiologists. Competitors were encouraged to develop automatic airway segmentation models with high robustness and generalization abilities, followed by exploring the most correlated QIB of mortality prediction. A training set of 120 high-resolution computerised tomography (HRCT) scans were publicly released with expert annotations and mortality status. The online validation set incorporated 52 HRCT scans from patients with fibrotic lung disease and the offline test set included 140 cases from fibrosis and COVID-19 patients. The results have shown that the capacity of extracting airway trees from patients with fibrotic lung disease could be enhanced by introducing voxel-wise weighted general union loss and continuity loss. In addition to the competitive image biomarkers for prognosis, a strong airway-derived biomarker (Hazard ratio>1.5, p<0.0001) was revealed for survival prognostication compared with existing clinical measurements, clinician assessment and AI-based biomarkers.
A Learning oriented DLP System based on Classification Model
Data is the key asset for organizations and data sharing is lifeline for organization growth; which may lead to data loss. Data leakage is the most critical issue being faced by organizations. In order to mitigate the data leakage issues data leakage prevention systems (DLPSs) are deployed at various levels by the organizations. DLPSs are capable to protect all kind of data i.e. DAR, DIM/DIT, DIU. Statistical analysis, regular expression, data fingerprinting are common approaches exercised in DLP system. Out of these techniques; statistical analysis approach is most appropriate for proposed DLP model of data security. This paper defines a statistical DLP model for document classification. Model uses various statistical approaches like TF-IDF (Term Frequency- Inverse Document Frequency) a renowned term count/weighing function, Vectorization, Gradient boosting document classification etc. to classify the documents before allowing any access to it. Machine learning is used to test and train the model. Proposed model also introduces an extremely efficient and more accurate approach; IGBCA (Improvised Gradient Boosting Classification Algorithm); for document classification, to prevent them from possible data leakage. Results depicts that proposed model can classify documents with high accuracy and on basis of which data can be prevented from being loss.
CLIP as RNN: Segment Countless Visual Concepts without Training Endeavor
Sun, Shuyang, Li, Runjia, Torr, Philip, Gu, Xiuye, Li, Siyang
Existing open-vocabulary image segmentation methods require a fine-tuning step on mask annotations and/or image-text datasets. Mask labels are labor-intensive, which limits the number of categories in segmentation datasets. As a result, the open-vocabulary capacity of pre-trained VLMs is severely reduced after fine-tuning. However, without fine-tuning, VLMs trained under weak image-text supervision tend to make suboptimal mask predictions when there are text queries referring to non-existing concepts in the image. To alleviate these issues, we introduce a novel recurrent framework that progressively filters out irrelevant texts and enhances mask quality without training efforts. The recurrent unit is a two-stage segmenter built upon a VLM with frozen weights. Thus, our model retains the VLM's broad vocabulary space and strengthens its segmentation capability. Experimental results show that our method outperforms not only the training-free counterparts, but also those fine-tuned with millions of additional data samples, and sets new state-of-the-art records for both zero-shot semantic and referring image segmentation tasks. Specifically, we improve the current record by 28.8, 16.0, and 6.9 mIoU on Pascal VOC, COCO Object, and Pascal Context.
Finding Order in Chaos: A Novel Data Augmentation Method for Time Series in Contrastive Learning
Demirel, Berken Utku, Holz, Christian
The success of contrastive learning is well known to be dependent on data augmentation. Although the degree of data augmentations has been well controlled by utilizing pre-defined techniques in some domains like vision, time-series data augmentation is less explored and remains a challenging problem due to the complexity of the data generation mechanism, such as the intricate mechanism involved in the cardiovascular system. Moreover, there is no widely recognized and general time-series augmentation method that can be applied across different tasks. In this paper, we propose a novel data augmentation method for quasi-periodic time-series tasks that aims to connect intra-class samples together, and thereby find order in the latent space. Our method builds upon the well-known mixup technique by incorporating a novel approach that accounts for the periodic nature of non-stationary time-series. Also, by controlling the degree of chaos created by data augmentation, our method leads to improved feature representations and performance on downstream tasks. We evaluate our proposed method on three time-series tasks, including heart rate estimation, human activity recognition, and cardiovascular disease detection. Extensive experiments against state-of-the-art methods show that the proposed approach outperforms prior works on optimal data generation and known data augmentation techniques in the three tasks, reflecting the effectiveness of the presented method. Source code: https://github.com/eth-siplab/Finding_Order_in_Chaos
ThoraX-PriorNet: A Novel Attention-Based Architecture Using Anatomical Prior Probability Maps for Thoracic Disease Classification
Hossain, Md. Iqbal, Zunaed, Mohammad, Ahmed, Md. Kawsar, Hossain, S. M. Jawwad, Hasan, Anwarul, Hasan, Taufiq
Objective: Computer-aided disease diagnosis and prognosis based on medical images is a rapidly emerging field. Many Convolutional Neural Network (CNN) architectures have been developed by researchers for disease classification and localization from chest X-ray images. It is known that different thoracic disease lesions are more likely to occur in specific anatomical regions compared to others. This article aims to incorporate this disease and region-dependent prior probability distribution within a deep learning framework. Methods: We present the ThoraX-PriorNet, a novel attention-based CNN model for thoracic disease classification. We first estimate a disease-dependent spatial probability, i.e., an anatomical prior, that indicates the probability of occurrence of a disease in a specific region in a chest X-ray image. Next, we develop a novel attention-based classification model that combines information from the estimated anatomical prior and automatically extracted chest region of interest (ROI) masks to provide attention to the feature maps generated from a deep convolution network. Unlike previous works that utilize various self-attention mechanisms, the proposed method leverages the extracted chest ROI masks along with the probabilistic anatomical prior information, which selects the region of interest for different diseases to provide attention. Results: The proposed method shows superior performance in disease classification on the NIH ChestX-ray14 dataset compared to existing state-of-the-art methods while reaching an area under the ROC curve (%AUC) of 84.67. Regarding disease localization, the anatomy prior attention method shows competitive performance compared to state-of-the-art methods, achieving an accuracy of 0.80, 0.63, 0.49, 0.33, 0.28, 0.21, and 0.04 with an Intersection over Union (IoU) threshold of 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, and 0.7, respectively.