Accuracy
Towards Robust Multimodal Physiological Foundation Models: Handling Arbitrary Missing Modalities
Jiang, Wei-Bang, Fu, Xi, Ding, Yi, Guan, Cuntai
Multimodal physiological signals, such as EEG, ECG, EOG, and EMG, are crucial for healthcare and brain-computer interfaces. While existing methods rely on specialized architectures and dataset-specific fusion strategies, they struggle to learn universal representations that generalize across datasets and handle missing modalities at inference time. To address these issues, we propose PhysioOmni, a foundation model for multimodal physiological signal analysis that models both homogeneous and heterogeneous features to decouple multimodal signals and extract generic representations while maintaining compatibility with arbitrary missing modalities. PhysioOmni trains a decoupled multimodal tokenizer, enabling masked signal pre-training via modality-invariant and modality-specific objectives. To ensure adaptability to diverse and incomplete modality combinations, the pre-trained encoders undergo resilient fine-tuning with prototype alignment on downstream datasets. Extensive experiments on four downstream tasks, emotion recognition, sleep stage classification, motor prediction, and mental workload detection, demonstrate that PhysioOmni achieves state-of-the-art performance while maintaining strong robustness to missing modalities. Our code and model weights will be released.
Stable Vision Concept Transformers for Medical Diagnosis
Hu, Lijie, Lai, Songning, Hua, Yuan, Yang, Shu, Zhang, Jingfeng, Wang, Di
Transparency is a paramount concern in the medical field, prompting researchers to delve into the realm of explainable AI (XAI). Among these XAI methods, Concept Bottleneck Models (CBMs) aim to restrict the model's latent space to human-understandable high-level concepts by generating a conceptual layer for extracting conceptual features, which has drawn much attention recently. However, existing methods rely solely on concept features to determine the model's predictions, which overlook the intrinsic feature embeddings within medical images. To address this utility gap between the original models and concept-based models, we propose Vision Concept Transformer (VCT). Furthermore, despite their benefits, CBMs have been found to negatively impact model performance and fail to provide stable explanations when faced with input perturbations, which limits their application in the medical field. To address this faithfulness issue, this paper further proposes the Stable Vision Concept Transformer (SVCT) based on VCT, which leverages the vision transformer (ViT) as its backbone and incorporates a conceptual layer. SVCT employs conceptual features to enhance decision-making capabilities by fusing them with image features and ensures model faithfulness through the integration of Denoised Diffusion Smoothing. Comprehensive experiments on four medical datasets demonstrate that our VCT and SVCT maintain accuracy while remaining interpretable compared to baselines. Furthermore, even when subjected to perturbations, our SVCT model consistently provides faithful explanations, thus meeting the needs of the medical field.
EMBER2024 -- A Benchmark Dataset for Holistic Evaluation of Malware Classifiers
Joyce, Robert J., Miller, Gideon, Roth, Phil, Zak, Richard, Zaresky-Williams, Elliott, Anderson, Hyrum, Raff, Edward, Holt, James
A lack of accessible data has historically restricted malware analysis research, and practitioners have relied heavily on datasets provided by industry sources to advance. Existing public datasets are limited by narrow scope - most include files targeting a single platform, have labels supporting just one type of malware classification task, and make no effort to capture the evasive files that make malware detection difficult in practice. We present EMBER2024, a new dataset that enables holistic evaluation of malware classifiers. Created in collaboration with the authors of EMBER2017 and EMBER2018, the EMBER2024 dataset includes hashes, metadata, feature vectors, and labels for more than 3.2 million files from six file formats. Our dataset supports the training and evaluation of machine learning models on seven malware classification tasks, including malware detection, malware family classification, and malware behavior identification. EMBER2024 is the first to include a collection of malicious files that initially went undetected by a set of antivirus products, creating a "challenge" set to assess classifier performance against evasive malware. This work also introduces EMBER feature version 3, with added support for several new feature types. We are releasing the EMBER2024 dataset to promote reproducibility and empower researchers in the pursuit of new malware research topics.
NIMO: a Nonlinear Interpretable MOdel
Xu, Shijian, Negri, Marcello Massimo, Roth, Volker
Neural networks (NNs) have achieved tremendous success over the past decade, yet they are still extremely difficult to interpret. In contrast, linear models are less expressive but offer inherent interpretability. Linear coefficients are interpretable as the marginal effect of a feature on the prediction, assuming all other features are kept fixed. To combine the benefits of both approaches, we introduce NIMO (Nonlinear Interpretable MOdel). The key idea is to define a model where the NN is designed to learn nonlinear corrections to the linear model predictions, while also maintaining the original interpretability of the linear coefficients. Relevantly, we develop an optimization algorithm based on profile likelihood that elegantly allows for optimizing over the NN parameters while updating the linear coefficients analytically. By relying on adaptive ridge regression we can easily incorporate sparsity constraints as well. We show empirically that we can recover the underlying linear coefficients while significantly improving the predictive accuracy. Compared to other hybrid interpretable approaches, our model is the only one that actually maintains the same interpretability of linear coefficients as in linear models. We also achieve higher performance on various regression and classification settings.
Comparative performance of ensemble models in predicting dental provider types: insights from fee-for-service data
Al-Batah, Mohammad Subhi, Alqaraleh, Muhyeeddin, Alzboon, Mowafaq Salem, Alourani, Abdullah
Dental provider classification plays a crucial role in optimizing healthcare resource allocation and policy planning. Effective categorization of providers, such as standard rendering providers and safety net clinic (SNC) providers, enhances service delivery to underserved populations. This study aimed to evaluate the performance of machine learning models in classifying dental providers using a 2018 dataset. A dataset of 24,300 instances with 20 features was analyzed, including beneficiary and service counts across fee-for-service (FFS), Geographic Managed Care, and Pre-Paid Health Plans. Providers were categorized by delivery system and patient age groups (0-20 and 21+). Despite 38.1% missing data, multiple machine learning algorithms were tested, including k-Nearest Neighbors (kNN), Decision Trees, Support Vector Machines (SVM), Stochastic Gradient Descent (SGD), Random Forest, Neural Networks, and Gradient Boosting. A 10-fold cross-validation approach was applied, and models were evaluated using AUC, classification accuracy (CA), F1-score, precision, and recall. Neural Networks achieved the highest AUC (0.975) and CA (94.1%), followed by Random Forest (AUC: 0.948, CA: 93.0%). These models effectively handled imbalanced data and complex feature interactions, outperforming traditional classifiers like Logistic Regression and SVM. Advanced machine learning techniques, particularly ensemble and deep learning models, significantly enhance dental workforce classification. Their integration into healthcare analytics can improve provider identification and resource distribution, benefiting underserved populations.
Recent Advances in Medical Image Classification
Medical image classification is crucial for diagnosis and treatment, benefiting significantly from advancements in artificial intelligence. The paper reviews recent progress in the field, focusing on three levels of solutions: basic, specific, and applied. It highlights advances in traditional methods using deep learning models like Convolutional Neural Networks and Vision Transformers, as well as state-of-the-art approaches with Vision Language Models. These models tackle the issue of limited labeled data, and enhance and explain predictive results through Explainable Artificial Intelligence.
A Comprehensive Study on Medical Image Segmentation using Deep Neural Networks
Over the past decade, Medical Image Segmentation (MIS) using Deep Neural Networks (DNNs) has achieved significant performance improvements and holds great promise for future developments. This paper presents a comprehensive study on MIS based on DNNs. Intelligent Vision Systems are often evaluated based on their output levels, such as Data, Information, Knowledge, Intelligence, and Wisdom (DIKIW),and the state-of-the-art solutions in MIS at these levels are the focus of research. Additionally, Explainable Artificial Intelligence (XAI) has become an important research direction, as it aims to uncover the "black box" nature of previous DNN architectures to meet the requirements of transparency and ethics. The study emphasizes the importance of MIS in disease diagnosis and early detection, particularly for increasing the survival rate of cancer patients through timely diagnosis. XAI and early prediction are considered two important steps in the journey from "intelligence" to "wisdom." Additionally, the paper addresses existing challenges and proposes potential solutions to enhance the efficiency of implementing DNN-based MIS.
Evaluation of LLMs in Speech is Often Flawed: Test Set Contamination in Large Language Models for Speech Recognition
Tseng, Yuan, Parcollet, Titouan, van Dalen, Rogier, Zhang, Shucong, Bhattacharya, Sourav
Recent work suggests that large language models (LLMs) can improve performance of speech tasks compared to existing systems. To support their claims, results on LibriSpeech and Common Voice are often quoted. However, this work finds that a substantial amount of the LibriSpeech and Common Voice evaluation sets appear in public LLM pretraining corpora. This calls into question the reliability of findings drawn from these two datasets. To measure contamination impact, LLMs trained with/without contamination are compared. A contaminated LLM is more likely to generate test sentences it has seen during training. Then, speech recognisers based on LLMs are compared. They show only subtle error rate differences if the LLM is contaminated, but assign significantly higher probabilities to transcriptions seen during LLM training. Results show that LLM outputs can be biased by tiny amounts of data contamination, highlighting the importance of evaluating LLM-based speech systems with held-out data.
Breaking the Cloak! Unveiling Chinese Cloaked Toxicity with Homophone Graph and Toxic Lexicon
Ma, Xuchen, Yu, Jianxiang, Shao, Wenming, Pang, Bo, Li, Xiang
Social media platforms have experienced a significant rise in toxic content, including abusive language and discriminatory remarks, presenting growing challenges for content moderation. Some users evade censorship by deliberately disguising toxic words through homophonic cloak, which necessitates the task of unveiling cloaked toxicity. Existing methods are mostly designed for English texts, while Chinese cloaked toxicity unveiling has not been solved yet. To tackle the issue, we propose C$^2$TU, a novel training-free and prompt-free method for Chinese cloaked toxic content unveiling. It first employs substring matching to identify candidate toxic words based on Chinese homo-graph and toxic lexicon. Then it filters those candidates that are non-toxic and corrects cloaks to be their corresponding toxicities. Specifically, we develop two model variants for filtering, which are based on BERT and LLMs, respectively. For LLMs, we address the auto-regressive limitation in computing word occurrence probability and utilize the full semantic contexts of a text sequence to reveal cloaked toxic words. Extensive experiments demonstrate that C$^2$TU can achieve superior performance on two Chinese toxic datasets. In particular, our method outperforms the best competitor by up to 71% on the F1 score and 35% on accuracy, respectively. Our code and data are available at https://github.com/XDxc-cuber/C2TU-Chinese-cloaked-toxicity-unveiling.
Surgeons vs. Computer Vision: A comparative analysis on surgical phase recognition capabilities
Mezzina, Marco, De Backer, Pieter, Vercauteren, Tom, Blaschko, Matthew, Mottrie, Alexandre, Tuytelaars, Tinne
Purpose: Automated Surgical Phase Recognition (SPR) uses Artificial Intelligence (AI) to segment the surgical workflow into its key events, functioning as a building block for efficient video review, surgical education as well as skill assessment. Previous research has focused on short and linear surgical procedures and has not explored if temporal context influences experts' ability to better classify surgical phases. This research addresses these gaps, focusing on Robot-Assisted Partial Nephrectomy (RAPN) as a highly non-linear procedure. Methods: Urologists of varying expertise were grouped and tasked to indicate the surgical phase for RAPN on both single frames and video snippets using a custom-made web platform. Participants reported their confidence levels and the visual landmarks used in their decision-making. AI architectures without and with temporal context as trained and benchmarked on the Cholec80 dataset were subsequently trained on this RAPN dataset. Results: Video snippets and presence of specific visual landmarks improved phase classification accuracy across all groups. Surgeons displayed high confidence in their classifications and outperformed novices, who struggled discriminating phases. The performance of the AI models is comparable to the surgeons in the survey, with improvements when temporal context was incorporated in both cases. Conclusion: SPR is an inherently complex task for expert surgeons and computer vision, where both perform equally well when given the same context. Performance increases when temporal information is provided. Surgical tools and organs form the key landmarks for human interpretation and are expected to shape the future of automated SPR.