Single-cell RNA sequencing (scRNA-seq) is a fast growing approach to measure the genome-wide transcriptome of many individual cells in parallel, but results in noisy data with many dropout events. Existing methods to learn molecular signatures from bulk transcriptomic data may therefore not be adapted to scRNA-seq data, in order to automatically classify individual cells into predefined classes. We propose a new method called DropLasso to learn a molecular signature from scRNA-seq data. DropLasso extends the dropout regularisation technique, popular in neural network training, to esti- mate sparse linear models. It is well adapted to data corrupted by dropout noise, such as scRNA-seq data, and we clarify how it relates to elastic net regularisation. We provide promising results on simulated and real scRNA-seq data, suggesting that DropLasso may be better adapted than standard regularisa- tions to infer molecular signatures from scRNA-seq data.

Large-scale regression problems where both the number of variables, $p$, and the number of observations, $n$, may be large and in the order of millions or more, are becoming increasingly more common. Typically the data are sparse: only a fraction of a percent of the entries in the design matrix are non-zero. Nevertheless, often the only computationally feasible approach is to perform dimension reduction to obtain a new design matrix with far fewer columns and then work with this compressed data. $b$-bit min-wise hashing (Li and Konig, 2011) is a promising dimension reduction scheme for sparse matrices which produces a set of random features such that regression on the resulting design matrix approximates a kernel regression with the resemblance kernel. In this work, we derive bounds on the prediction error of such regressions. For both linear and logistic models we show that the average prediction error vanishes asymptotically as long as $q \|\beta^*\|_2^2 /n \rightarrow 0$, where $q$ is the average number of non-zero entries in each row of the design matrix and $\beta^*$ is the coefficient of the linear predictor. We also show that ordinary least squares or ridge regression applied to the reduced data can in fact allow us fit more flexible models. We obtain non-asymptotic prediction error bounds for interaction models and for models where an unknown row normalisation must be applied in order for the signal to be linear in the predictors.

We consider the problem of detecting out-of-distribution images in neural networks. We propose ODIN, a simple and effective method that does not require any change to a pre-trained neural network. Our method is based on the observation that using temperature scaling and adding small perturbations to the input can separate the softmax score distributions between in-and out-of-distribution images, allowing for more effective detection. We show in a series of experiments that ODIN is compatible with diverse network architectures and datasets. It consistently outperforms the baseline approach (Hendrycks & Gimpel, 2017) by a large margin, establishing a new state-of-the-art performance on this task. For example, ODIN reduces the false positive rate from the baseline 34.7% to 4.3% on the DenseNet (applied to CIFAR-10 and Tiny-ImageNet) when the true positive rate is 95%.

This paper proposes an agent with particle swarm optimization (PSO) based on a Fuzzy Markup Language (FML) for students learning performance evaluation and educational applications, and the proposed agent is according to the response data from a conventional test and an item response theory. First, we apply a GS-based parameter estimation mechanism to estimate the items parameters according to the response data, and then to compare its results with those of an IRT-based Bayesian parameter estimation mechanism. In addition, we propose a static-IRT test assembly mechanism to assemble a form for the conventional test. The presented FML-based dynamic assessment mechanism infers the probability of making a correct response to the item for a student with various abilities. Moreover, this paper also proposes a novel PFML learning mechanism for optimizing the parameters between items and students. Finally, we adopt a K-fold cross validation mechanism to evaluate the performance of the proposed agent. Experimental results show that the novel PFML learning mechanism for the parameter estimation and learning optimization performs favorably. We believe the proposed PFML will be a reference for education research and pedagogy and an important co-learning mechanism for future human-machine educational applications.

Android devices are growing exponentially and are connected through the internet accessing billion of online websites. The popularity of these devices encourages malware developer to penetrate the market with malicious apps to annoy and disrupt the victim. Although, for the detection of malicious apps different approaches are discussed. However, proposed approaches are not suffice to detect the advanced malware to limit/prevent the damages. In this, very few approaches are based on opcode occurrence to classify the malicious apps. Therefore, this paper investigates the five classifiers using opcodes occurrence as the prominent features for the detection of malicious apps. For the analysis, we use WEKA tool and found that FT detection accuracy ( 79.27%) is best among the investigated classifiers. However, true positives rate i.e. malware detection rate is highest ( 99.91%) by RF and fluctuate least with the different number of prominent features compared to other studied classifiers. The analysis shows that overall accuracy is majorly affected by the false positives of the classifier.

We address the problem of algorithmic fairness: ensuring that sensitive variables do not unfairly influence the outcome of a classifier. We present an approach based on empirical risk minimization, which incorporates a fairness constraint into the learning problem. It encourages the conditional risk of the learned classifier to be approximately constant with respect to the sensitive variable. We derive both risk and fairness bounds that support the statistical consistency of our approach. We specify our approach to kernel methods and observe that the fairness requirement implies an orthogonality constraint which can be easily added to these methods. We further observe that for linear models the constraint translates into a simple data preprocessing step. Experiments indicate that the method is empirically effective and performs favorably against state-of-the-art approaches.

For fast and energy-efficient deployment of trained deep neural networks on resource-constrained embedded hardware, each learned weight parameter should ideally be represented and stored using a single bit. Error-rates usually increase when this requirement is imposed. Here, we report large improvements in error rates on multiple datasets, for deep convolutional neural networks deployed with 1-bit-per-weight. Using wide residual networks as our main baseline, our approach simplifies existing methods that binarize weights by applying the sign function in training; we apply scaling factors for each layer with constant unlearned values equal to the layer-specific standard deviations used for initialization. For CIFAR-10, CIFAR-100 and ImageNet, and models with 1-bit-per-weight requiring less than 10 MB of parameter memory, we achieve error rates of 3.9%, 18.5% and 26.0% / 8.5% (Top-1 / Top-5) respectively. We also considered MNIST, SVHN and ImageNet32, achieving 1-bit-per-weight test results of 0.27%, 1.9%, and 41.3% / 19.1% respectively. For CIFAR, our error rates halve previously reported values, and are within about 1% of our error-rates for the same network with full-precision weights. For networks that overfit, we also show significant improvements in error rate by not learning batch normalization scale and offset parameters. This applies to both full precision and 1-bit-per-weight networks. Using a warm-restart learning-rate schedule, we found that training for 1-bit-per-weight is just as fast as full-precision networks, with better accuracy than standard schedules, and achieved about 98%-99% of peak performance in just 62 training epochs for CIFAR-10/100. For full training code and trained models in MATLAB, Keras and PyTorch see https://github.com/McDonnell-Lab/1-bit-per-weight/ .

The problem of detecting whether a test sample is from in-distribution (i.e., training distribution by a classifier) or out-of-distribution sufficiently different from it arises in many real-world machine learning applications. However, the state-of-art deep neural networks are known to be highly overconfident in their predictions, i.e., do not distinguish in- and out-of-distributions. Recently, to handle this issue, several threshold-based detectors have been proposed given pre-trained neural classifiers. However, the performance of prior works highly depends on how to train the classifiers since they only focus on improving inference procedures. In this paper, we develop a novel training method for classifiers so that such inference algorithms can work better. In particular, we suggest two additional terms added to the original loss (e.g., cross entropy). The first one forces samples from out-of-distribution less confident by the classifier and the second one is for (implicitly) generating most effective training samples for the first one. In essence, our method jointly trains both classification and generative neural networks for out-of-distribution. We demonstrate its effectiveness using deep convolutional neural networks on various popular image datasets.

Classification is one of the most widely used instances of supervised learning, with applications in numerous fields including spam detection, Fan et al. (2016); computer vision, Chen (2015); and genomics, Zhou et al. (2005). In recent years, the field has experienced an enormous growth becoming a major research area in statistics and machine learning, Efron and Hastie (2016). Most efforts in classification have focused on obtaining more accurate algorithms which, however, largely ignore a relevant issue in many applications: the presence of adversaries who actively manipulate the data to fool the classifier so as to attain a benefit. As an example, when a spammer makes the classifier think that a spam is legit, he may profit by selling the information he gets from the victim. In such contexts, as classification algorithms improve, adversaries usually become smarter when making attacks.

In this work we present a novel system for generation of virtual PET images using CT scans. We combine a fully convolutional network (FCN) with a conditional generative adversarial network (GAN) to generate simulated PET data from given input CT data. The synthesized PET can be used for false-positive reduction in lesion detection solutions. Clinically, such solutions may enable lesion detection and drug treatment evaluation in a CT-only environment, thus reducing the need for the more expensive and radioactive PET/CT scan. Our dataset includes 60 PET/CT scans from Sheba Medical center. We used 23 scans for training and 37 for testing. Different schemes to achieve the synthesized output were qualitatively compared. Quantitative evaluation was conducted using an existing lesion detection software, combining the synthesized PET as a false positive reduction layer for the detection of malignant lesions in the liver. Current results look promising showing a 28% reduction in the average false positive per case from 2.9 to 2.1. The suggested solution is comprehensive and can be expanded to additional body organs, and different modalities.