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Construction of embedded fMRI resting state functional connectivity networks using manifold learning

arXiv.org Artificial Intelligence

We construct embedded functional connectivity networks (FCN) from benchmark resting-state functional magnetic resonance imaging (rsfMRI) data acquired from patients with schizophrenia and healthy controls based on linear and nonlinear manifold learning algorithms, namely, Multidimensional Scaling (MDS), Isometric Feature Mapping (ISOMAP) and Diffusion Maps. Furthermore, based on key global graph-theoretical properties of the embedded FCN, we compare their classification potential using machine learning techniques. We also assess the performance of two metrics that are widely used for the construction of FCN from fMRI, namely the Euclidean distance and the lagged cross-correlation metric. We show that the FCN constructed with Diffusion Maps and the lagged cross-correlation metric outperform the other combinations.


CSNE: Conditional Signed Network Embedding

arXiv.org Machine Learning

Signed networks are mathematical structures that encode positive and negative relations between entities such as friend/foe or trust/distrust. Recently, several papers studied the construction of useful low-dimensional representations (embeddings) of these networks for the prediction of missing relations or signs. Existing embedding methods for sign prediction generally enforce different notions of status or balance theories in their optimization function. These theories, however, are often inaccurate or incomplete, which negatively impacts method performance. In this context, we introduce conditional signed network embedding (CSNE). Our probabilistic approach models structural information about the signs in the network separately from fine-grained detail. Structural information is represented in the form of a prior, while the embedding itself is used for capturing fine-grained information. These components are then integrated in a rigorous manner. CSNE's accuracy depends on the existence of sufficiently powerful structural priors for modelling signed networks, currently unavailable in the literature. Thus, as a second main contribution, which we find to be highly valuable in its own right, we also introduce a novel approach to construct priors based on the Maximum Entropy (MaxEnt) principle. These priors can model the \emph{polarity} of nodes (degree to which their links are positive) as well as signed \emph{triangle counts} (a measure of the degree structural balance holds to in a network). Experiments on a variety of real-world networks confirm that CSNE outperforms the state-of-the-art on the task of sign prediction. Moreover, the MaxEnt priors on their own, while less accurate than full CSNE, achieve accuracies competitive with the state-of-the-art at very limited computational cost, thus providing an excellent runtime-accuracy trade-off in resource-constrained situations.


Fair Inputs and Fair Outputs: The Incompatibility of Fairness in Privacy and Accuracy

arXiv.org Machine Learning

Fairness concerns about algorithmic decision-making systems have been mainly focused on the outputs (e.g., the accuracy of a classifier across individuals or groups). However, one may additionally be concerned with fairness in the inputs. In this paper, we propose and formulate two properties regarding the inputs of (features used by) a classifier. In particular, we claim that fair privacy (whether individuals are all asked to reveal the same information) and need-to-know (whether users are only asked for the minimal information required for the task at hand) are desirable properties of a decision system. We explore the interaction between these properties and fairness in the outputs (fair prediction accuracy). We show that for an optimal classifier these three properties are in general incompatible, and we explain what common properties of data make them incompatible. Finally we provide an algorithm to verify if the trade-off between the three properties exists in a given dataset, and use the algorithm to show that this trade-off is common in real data.


Immunity Passports and the Perils of Conferring Coronavirus Status

The New Yorker

In January, a Swedish entrepreneur named Joakim Hultin co-founded Sidehide, a new digital app intended to streamline hotel reservations. Weeks later, some of the first confirmed cases of COVID-19 were reported in Europe. Almost instantly, Hultin told me, "demand stopped." Before the pandemic, Sidehide was working with a London-based company called Onfido, which uses artificial intelligence and facial recognition to verify identities. Hultin learned that Onfido had created a way for users to upload a serology test to a private server and use facial biometric data to unlock the data and display the results.


Data Mining with Big Data in Intrusion Detection Systems: A Systematic Literature Review

arXiv.org Artificial Intelligence

Cloud computing has become a powerful and indispensable technology for complex, high performance and scalable computation. The exponential expansion in the deployment of cloud technology has produced a massive amount of data from a variety of applications, resources and platforms. In turn, the rapid rate and volume of data creation has begun to pose significant challenges for data management and security. The design and deployment of intrusion detection systems (IDS) in the big data setting has, therefore, become a topic of importance. In this paper, we conduct a systematic literature review (SLR) of data mining techniques (DMT) used in IDS-based solutions through the period 2013-2018. We employed criterion-based, purposive sampling identifying 32 articles, which constitute the primary source of the present survey. After a careful investigation of these articles, we identified 17 separate DMTs deployed in an IDS context. This paper also presents the merits and disadvantages of the various works of current research that implemented DMTs and distributed streaming frameworks (DSF) to detect and/or prevent malicious attacks in a big data environment.


Insider Threat Detection with AI Using Tensorflow and RapidMiner Studio

#artificialintelligence

This technical article will teach you how to pre-process data, create your own neural networks, and train and evaluate models using the US-CERT's simulated insider threat dataset. The methods and solutions are designed for non-domain experts; particularly cyber security professionals. We will start our journey with the raw data provided by the dataset and provide examples of different pre-processing methods to get it "ready" for the AI solution to ingest. We will ultimately create models that can be re-used for additional predictions based on security events. Throughout the article, I will also point out the applicability and return on investment depending on your existing Information Security program in the enterprise. Note: To use and replicate the pre-processed data and steps we use, prepare to spend 1โ€“2 hours on this page. Stay with me and try not to fall asleep during the data pre-processing portion. What many tutorials don't state is that if you're starting from scratch; data pre-processing takes up to 90% of your time when doing projects like these. The author provides these methods, insights, and recommendations *as is* and makes no claim of warranty.


Fitting Laplacian Regularized Stratified Gaussian Models

arXiv.org Machine Learning

We consider the problem of jointly estimating multiple related zero-mean Gaussian distributions from data. We propose to jointly estimate these covariance matrices using Laplacian regularized stratified model fitting, which includes loss and regularization terms for each covariance matrix, and also a term that encourages the different covariances matrices to be close. This method `borrows strength' from the neighboring covariances, to improve its estimate. With well chosen hyper-parameters, such models can perform very well, especially in the low data regime. We propose a distributed method that scales to large problems, and illustrate the efficacy of the method with examples in finance, radar signal processing, and weather forecasting.


A Neural Network Looks at Leonardo's(?) Salvator Mundi

arXiv.org Artificial Intelligence

We use convolutional neural networks (CNNs) to analyze authorship questions surrounding the works of Leonardo da Vinci -- in particular, Salvator Mundi, the world's most expensive painting and among the most controversial. Trained on the works of an artist under study and visually comparable works of other artists, our system can identify likely forgeries and shed light on attribution controversies. Leonardo's few extant paintings test the limits of our system and require corroborative techniques of testing and analysis.


Repurpose Open Data to Discover Therapeutics for COVID-19 using Deep Learning

arXiv.org Machine Learning

There have been more than 850,000 confirmed cases and over 48,000 deaths from the human coronavirus disease 2019 (COVID-19) pandemic, caused by novel severe acute respiratory syndrome coronavirus (SARS-CoV-2), in the United States alone. However, there are currently no proven effective medications against COVID-19. Drug repurposing offers a promising way for the development of prevention and treatment strategies for COVID-19. This study reports an integrative, network-based deep learning methodology to identify repurposable drugs for COVID-19 (termed CoV-KGE). Specifically, we built a comprehensive knowledge graph that includes 15 million edges across 39 types of relationships connecting drugs, diseases, genes, pathways, and expressions, from a large scientific corpus of 24 million PubMed publications. Using Amazon AWS computing resources, we identified 41 repurposable drugs (including indomethacin, toremifene and niclosamide) whose therapeutic association with COVID-19 were validated by transcriptomic and proteomic data in SARS-CoV-2 infected human cells and data from ongoing clinical trials. While this study, by no means recommends specific drugs, it demonstrates a powerful deep learning methodology to prioritize existing drugs for further investigation, which holds the potential of accelerating therapeutic development for COVID-19.


Your Ultimate Data Science Statistics & Mathematics Cheat Sheet

#artificialintelligence

Classifier metrics are metrics used to evaluate the performance of machine learning classifiers -- models that put each training example into one of several discrete categories. Confusion Matrix is a matrix used to indicate a classifier's predictions on labels. It contains four cells, each corresponding to one combination of a predicted true or false and an actual true or false. Many classifier metrics are based on the confusion matrix, so it's helpful to keep an image of it stored in your mind. Sensitivity/Recall is the number of positives that were accurately predicted.