Pain monitoring is essential to the quality of care for patients undergoing a medical procedure with sedation. An automated mechanism for detecting pain could improve sedation dose titration. Previous studies on facial pain detection have shown the viability of computer vision methods in detecting pain in unoccluded faces. However, the faces of patients undergoing procedures are often partially occluded by medical devices and face masks. A previous preliminary study on pain detection on artificially occluded faces has shown a feasible approach to detect pain from a narrow band around the eyes. This study has collected video data from masked faces of 14 patients undergoing procedures in an interventional radiology department and has trained a deep learning model using this dataset. The model was able to detect expressions of pain accurately and, after causal temporal smoothing, achieved an average precision (AP) of 0.72 and an area under the receiver operating characteristic curve (AUC) of 0.82. These results outperform baseline models and show viability of computer vision approaches for pain detection of masked faces during procedural sedation. Cross-dataset performance is also examined when a model is trained on a publicly available dataset and tested on the sedation videos. The ways in which pain expressions differ in the two datasets are qualitatively examined.

The asteroidal main belt is crossed by a web of mean-motion and secular resonances, that occur when there is a commensurability between fundamental frequencies of the asteroids and planets. Traditionally, these objects were identified by visual inspection of the time evolution of their resonant argument, which is a combination of orbital elements of the asteroid and the perturbing planet(s). Since the population of asteroids affected by these resonances is, in some cases, of the order of several thousand, this has become a taxing task for a human observer. Recent works used Convolutional Neural Networks (CNN) models to perform such task automatically. In this work, we compare the outcome of such models with those of some of the most advanced and publicly available CNN architectures, like the VGG, Inception and ResNet. The performance of such models is first tested and optimized for overfitting issues, using validation sets and a series of regularization techniques like data augmentation, dropout, and batch normalization. The three best-performing models were then used to predict the labels of larger testing databases containing thousands of images. The VGG model, with and without regularizations, proved to be the most efficient method to predict labels of large datasets. Since the Vera C. Rubin observatory is likely to discover up to four million new asteroids in the next few years, the use of these models might become quite valuable to identify populations of resonant minor bodies.

The compositionality and sparsity of high-throughput sequencing data poses a challenge for regression and classification. However, in microbiome research in particular, conditional modeling is an essential tool to investigate relationships between phenotypes and the microbiome. Existing techniques are often inadequate: they either rely on extensions of the linear log-contrast model (which adjusts for compositionality, but is often unable to capture useful signals), or they are based on black-box machine learning methods (which may capture useful signals, but ignore compositionality in downstream analyses). We propose KernelBiome, a kernel-based nonparametric regression and classification framework for compositional data. It is tailored to sparse compositional data and is able to incorporate prior knowledge, such as phylogenetic structure. KernelBiome captures complex signals, including in the zero-structure, while automatically adapting model complexity. We demonstrate on par or improved predictive performance compared with state-of-the-art machine learning methods. Additionally, our framework provides two key advantages: (i) We propose two novel quantities to interpret contributions of individual components and prove that they consistently estimate average perturbation effects of the conditional mean, extending the interpretability of linear log-contrast models to nonparametric models. (ii) We show that the connection between kernels and distances aids interpretability and provides a data-driven embedding that can augment further analysis. Finally, we apply the KernelBiome framework to two public microbiome studies and illustrate the proposed model analysis. KernelBiome is available as an open-source Python package at https://github.com/shimenghuang/KernelBiome.

Among current anchor-based detectors, a positive anchor box will be intuitively assigned to the object that overlaps it the most. The assigned label to each anchor will directly determine the optimization direction of the corresponding prediction box, including the direction of box regression and category prediction. In our practice of crowded object detection, however, the results show that a positive anchor does not always regress toward the object that overlaps it the most when multiple objects overlap. We name it anchor drift. The anchor drift reflects that the anchor-object matching relation, which is determined by the degree of overlap between anchors and objects, is not always optimal. Conflicts between the fixed matching relation and learned experience in the past training process may cause ambiguous predictions and thus raise the false-positive rate. In this paper, a simple but efficient adaptive two-stage anchor assignment (TSAA) method is proposed. It utilizes the final prediction boxes rather than the fixed anchors to calculate the overlap degree with objects to determine which object to regress for each anchor. The participation of the prediction box makes the anchor-object assignment mechanism adaptive. Extensive experiments are conducted on three classic detectors RetinaNet, Faster-RCNN and YOLOv3 on CrowdHuman and COCO to evaluate the effectiveness of TSAA. The results show that TSAA can significantly improve the detectors' performance without additional computational costs or network structure changes.

Linguistic anomalies detectable in spontaneous speech have shown promise for various clinical applications including screening for dementia and other forms of cognitive impairment. The feasibility of deploying automated tools that can classify language samples obtained from speech in large-scale clinical settings depends on the ability to capture and automatically transcribe the speech for subsequent analysis. However, the impressive performance of self-supervised learning (SSL) automatic speech recognition (ASR) models with curated speech data is not apparent with challenging speech samples from clinical settings. One of the key questions for successfully applying ASR models for clinical applications is whether imperfect transcripts they generate provide sufficient information for downstream tasks to operate at an acceptable level of accuracy. In this study, we examine the relationship between the errors produced by several deep learning ASR systems and their impact on the downstream task of dementia classification. One of our key findings is that, paradoxically, ASR systems with relatively high error rates can produce transcripts that result in better downstream classification accuracy than classification based on verbatim transcripts.

In this paper, we present a novel approach to adapt a sequence-to-sequence Transformer-Transducer ASR system to the keyword spotting (KWS) task. We achieve this by replacing the keyword in the text transcription with a special token and training the system to detect the token in an audio stream. At inference time, we create a decision function inspired by conventional KWS approaches, to make our approach more suitable for the KWS task. Furthermore, we introduce a specific keyword spotting loss by adapting the sequence-discriminative Minimum Bayes-Risk training technique. We find that our approach significantly outperforms ASR based KWS systems. When compared with a conventional keyword spotting system, our proposal has similar performance while bringing the advantages and flexibility of sequence-to-sequence training. Additionally, when combined with the conventional KWS system, our approach can improve the performance at any operation point.

We introduce a family of interpretable machine learning models, with two broad additions: Linearised Additive Models (LAMs) which replace the ubiquitous logistic link function in General Additive Models (GAMs); and SubscaleHedge, an expert advice algorithm for combining base models trained on subsets of features called subscales. LAMs can augment any additive binary classification model equipped with a sigmoid link function. Moreover, they afford direct global and local attributions of additive components to the model output in probability space. We argue that LAMs and SubscaleHedge improve the interpretability of their base algorithms. Using rigorous null-hypothesis significance testing on a broad suite of financial modelling data, we show that our algorithms do not suffer from large performance penalties in terms of ROC-AUC and calibration.

In the past few years, Artificial Intelligence (AI) has garnered attention from various industries including financial services (FS). AI has made a positive impact in financial services by enhancing productivity and improving risk management. While AI can offer efficient solutions, it has the potential to bring unintended consequences. One such consequence is the pronounced effect of AI-related unfairness and attendant fairness-related harms. These fairness-related harms could involve differential treatment of individuals; for example, unfairly denying a loan to certain individuals or groups of individuals. In this paper, we focus on identifying and mitigating individual unfairness and leveraging some of the recently published techniques in this domain, especially as applicable to the credit adjudication use case. We also investigate the extent to which techniques for achieving individual fairness are effective at achieving group fairness. Our main contribution in this work is functionalizing a two-step training process which involves learning a fair similarity metric from a group sense using a small portion of the raw data and training an individually "fair" classifier using the rest of the data where the sensitive features are excluded. The key characteristic of this two-step technique is related to its flexibility, i.e., the fair metric obtained in the first step can be used with any other individual fairness algorithms in the second step. Furthermore, we developed a second metric (distinct from the fair similarity metric) to determine how fairly a model is treating similar individuals. We use this metric to compare a "fair" model against its baseline model in terms of their individual fairness value. Finally, some experimental results corresponding to the individual unfairness mitigation techniques are presented.

Personal data collected at scale promises to improve decision-making and accelerate innovation. However, sharing and using such data raises serious privacy concerns. A promising solution is to produce synthetic data, artificial records to share instead of real data. Since synthetic records are not linked to real persons, this intuitively prevents classical re-identification attacks. However, this is insufficient to protect privacy. We here present TAPAS, a toolbox of attacks to evaluate synthetic data privacy under a wide range of scenarios. These attacks include generalizations of prior works and novel attacks. We also introduce a general framework for reasoning about privacy threats to synthetic data and showcase TAPAS on several examples.

Chest X-ray (CXR) datasets hosted on Kaggle, though useful from a data science competition standpoint, have limited utility in clinical use because of their narrow focus on diagnosing one specific disease. In real-world clinical use, multiple diseases need to be considered since they can co-exist in the same patient. In this work, we demonstrate how federated learning (FL) can be used to make these toy CXR datasets from Kaggle clinically useful. Specifically, we train a single FL classification model (`global`) using two separate CXR datasets -- one annotated for presence of pneumonia and the other for presence of pneumothorax (two common and life-threatening conditions) -- capable of diagnosing both. We compare the performance of the global FL model with models trained separately on both datasets (`baseline`) for two different model architectures. On a standard, naive 3-layer CNN architecture, the global FL model achieved AUROC of 0.84 and 0.81 for pneumonia and pneumothorax, respectively, compared to 0.85 and 0.82, respectively, for both baseline models (p>0.05). Similarly, on a pretrained DenseNet121 architecture, the global FL model achieved AUROC of 0.88 and 0.91 for pneumonia and pneumothorax, respectively, compared to 0.89 and 0.91, respectively, for both baseline models (p>0.05). Our results suggest that FL can be used to create global `meta` models to make toy datasets from Kaggle clinically useful, a step forward towards bridging the gap from bench to bedside.