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Hypercomplex Neural Architectures for Multi-View Breast Cancer Classification

arXiv.org Artificial Intelligence

Traditionally, deep learning methods for breast cancer classification perform a single-view analysis. However, radiologists simultaneously analyze all four views that compose a mammography exam, owing to the correlations contained in mammography views, which present crucial information for identifying tumors. In light of this, some studies have started to propose multi-view methods. Nevertheless, in such existing architectures, mammogram views are processed as independent images by separate convolutional branches, thus losing correlations among them. To overcome such limitations, in this paper we propose a novel approach for multi-view breast cancer classification based on parameterized hypercomplex neural networks. Thanks to hypercomplex algebra properties, our networks are able to model, and thus leverage, existing correlations between the different views that comprise a mammogram, thus mimicking the reading process performed by clinicians. The proposed methods are able to handle the information of a patient altogether without breaking the multi-view nature of the exam. We define architectures designed to process two-view exams, namely PHResNets, and four-view exams, i.e., PHYSEnet and PHYBOnet. Through an extensive experimental evaluation conducted with publicly available datasets, we demonstrate that our proposed models clearly outperform real-valued counterparts and also state-of-the-art methods, proving that breast cancer classification benefits from the proposed multi-view architectures. We also assess the method's robustness beyond mammogram analysis by considering different benchmarks, as well as a finer-scaled task such as segmentation. Full code and pretrained models for complete reproducibility of our experiments are freely available at: https://github.com/ispamm/PHBreast.


FairRoad: Achieving Fairness for Recommender Systems with Optimized Antidote Data

arXiv.org Artificial Intelligence

Today, recommender systems have played an increasingly important role in shaping our experiences of digital environments and social interactions. However, as recommender systems become ubiquitous in our society, recent years have also witnessed significant fairness concerns for recommender systems. Specifically, studies have shown that recommender systems may inherit or even amplify biases from historical data, and as a result, provide unfair recommendations. To address fairness risks in recommender systems, most of the previous approaches to date are focused on modifying either the existing training data samples or the deployed recommender algorithms, but unfortunately with limited degrees of success. In this paper, we propose a new approach called fair recommendation with optimized antidote data (FairRoad), which aims to improve the fairness performances of recommender systems through the construction of a small and carefully crafted antidote dataset. Toward this end, we formulate our antidote data generation task as a mathematical optimization problem, which minimizes the unfairness of the targeted recommender systems while not disrupting the deployed recommendation algorithms. Extensive experiments show that our proposed antidote data generation algorithm significantly improve the fairness of recommender systems with a small amounts of antidote data.


FNDaaS: Content-agnostic Detection of Fake News sites

arXiv.org Artificial Intelligence

Automatic fake news detection is a challenging problem in misinformation spreading, and it has tremendous real-world political and social impacts. Past studies have proposed machine learning-based methods for detecting such fake news, focusing on different properties of the published news articles, such as linguistic characteristics of the actual content, which however have limitations due to the apparent language barriers. Departing from such efforts, we propose FNDaaS, the first automatic, content-agnostic fake news detection method, that considers new and unstudied features such as network and structural characteristics per news website. This method can be enforced as-a-Service, either at the ISP-side for easier scalability and maintenance, or user-side for better end-user privacy. We demonstrate the efficacy of our method using data crawled from existing lists of 637 fake and 1183 real news websites, and by building and testing a proof of concept system that materializes our proposal. Our analysis of data collected from these websites shows that the vast majority of fake news domains are very young and appear to have lower time periods of an IP associated with their domain than real news ones. By conducting various experiments with machine learning classifiers, we demonstrate that FNDaaS can achieve an AUC score of up to 0.967 on past sites, and up to 77-92% accuracy on newly-flagged ones.


A Sandbox Tool to Bias(Stress)-Test Fairness Algorithms

arXiv.org Artificial Intelligence

Motivated by the growing importance of reducing unfairness in ML predictions, Fair-ML researchers have presented an extensive suite of algorithmic 'fairness-enhancing' remedies. Most existing algorithms, however, are agnostic to the sources of the observed unfairness. As a result, the literature currently lacks guiding frameworks to specify conditions under which each algorithmic intervention can potentially alleviate the underpinning cause of unfairness. To close this gap, we scrutinize the underlying biases (e.g., in the training data or design choices) that cause observational unfairness. We present the conceptual idea and a first implementation of a bias-injection sandbox tool to investigate fairness consequences of various biases and assess the effectiveness of algorithmic remedies in the presence of specific types of bias. We call this process the bias(stress)-testing of algorithmic interventions. Unlike existing toolkits, ours provides a controlled environment to counterfactually inject biases in the ML pipeline. This stylized setup offers the distinct capability of testing fairness interventions beyond observational data and against an unbiased benchmark. In particular, we can test whether a given remedy can alleviate the injected bias by comparing the predictions resulting after the intervention in the biased setting with true labels in the unbiased regime-that is, before any bias injection. We illustrate the utility of our toolkit via a proof-of-concept case study on synthetic data. Our empirical analysis showcases the type of insights that can be obtained through our simulations.


Agnostic Learning for Packing Machine Stoppage Prediction in Smart Factories

arXiv.org Artificial Intelligence

The cyber-physical convergence is opening up new business opportunities for industrial operators. The need for deep integration of the cyber and the physical worlds establishes a rich business agenda towards consolidating new system and network engineering approaches. This revolution would not be possible without the rich and heterogeneous sources of data, as well as the ability of their intelligent exploitation, mainly due to the fact that data will serve as a fundamental resource to promote Industry 4.0. One of the most fruitful research and practice areas emerging from this data-rich, cyber-physical, smart factory environment is the data-driven process monitoring field, which applies machine learning methodologies to enable predictive maintenance applications. In this paper, we examine popular time series forecasting techniques as well as supervised machine learning algorithms in the applied context of Industry 4.0, by transforming and preprocessing the historical industrial dataset of a packing machine's operational state recordings (real data coming from the production line of a manufacturing plant from the food and beverage domain). In our methodology, we use only a single signal concerning the machine's operational status to make our predictions, without considering other operational variables or fault and warning signals, hence its characterization as ``agnostic''. In this respect, the results demonstrate that the adopted methods achieve a quite promising performance on three targeted use cases.


Mixed Supervision of Histopathology Improves Prostate Cancer Classification from MRI

arXiv.org Artificial Intelligence

Non-invasive prostate cancer detection from MRI has the potential to revolutionize patient care by providing early detection of clinically-significant disease (ISUP grade group >= 2), but has thus far shown limited positive predictive value. To address this, we present an MRI-based deep learning method for predicting clinically significant prostate cancer applicable to a patient population with subsequent ground truth biopsy results ranging from benign pathology to ISUP grade group~5. Specifically, we demonstrate that mixed supervision via diverse histopathological ground truth improves classification performance despite the cost of reduced concordance with image-based segmentation. That is, where prior approaches have utilized pathology results as ground truth derived from targeted biopsies and whole-mount prostatectomy to strongly supervise the localization of clinically significant cancer, our approach also utilizes weak supervision signals extracted from nontargeted systematic biopsies with regional localization to improve overall performance. Our key innovation is performing regression by distribution rather than simply by value, enabling use of additional pathology findings traditionally ignored by deep learning strategies. We evaluated our model on a dataset of 973 (testing n=160) multi-parametric prostate MRI exams collected at UCSF from 2015-2018 followed by MRI/ultrasound fusion (targeted) biopsy and systematic (nontargeted) biopsy of the prostate gland, demonstrating that deep networks trained with mixed supervision of histopathology can significantly exceed the performance of the Prostate Imaging-Reporting and Data System (PI-RADS) clinical standard for prostate MRI interpretation.


Fairness Reprogramming

arXiv.org Artificial Intelligence

Despite a surge of recent advances in promoting machine Learning (ML) fairness, the existing mainstream approaches mostly require retraining or finetuning the entire weights of the neural network to meet the fairness criteria. However, this is often infeasible in practice for those large-scale trained models due to large computational and storage costs, low data efficiency, and model privacy issues. In this paper, we propose a new generic fairness learning paradigm, called FairReprogram, which incorporates the model reprogramming technique. Specifically, FairReprogram considers the case where models can not be changed and appends to the input a set of perturbations, called the fairness trigger, which is tuned towards the fairness criteria under a min-max formulation. We further introduce an information-theoretic framework that explains why and under what conditions fairness goals can be achieved using the fairness trigger. We show both theoretically and empirically that the fairness trigger can effectively obscure demographic biases in the output prediction of fixed ML models by providing false demographic information that hinders the model from utilizing the correct demographic information to make the prediction. Extensive experiments on both NLP and CV datasets demonstrate that our method can achieve better fairness improvements than retraining-based methods with far less data dependency under two widely-used fairness criteria. Codes are available at https://github.com/UCSB-NLP-Chang/Fairness-Reprogramming.git.


Mortality Prediction Models with Clinical Notes Using Sparse Attention at the Word and Sentence Levels

arXiv.org Artificial Intelligence

Intensive Care in-hospital mortality prediction has various clinical applications. Neural prediction models, especially when capitalising on clinical notes, have been put forward as improvement on currently existing models. However, to be acceptable these models should be performant and transparent. This work studies different attention mechanisms for clinical neural prediction models in terms of their discrimination and calibration. Specifically, we investigate sparse attention as an alternative to dense attention weights in the task of in-hospital mortality prediction from clinical notes. We evaluate the attention mechanisms based on: i) local self-attention over words in a sentence, and ii) global self-attention with a transformer architecture across sentences. We demonstrate that the sparse mechanism approach outperforms the dense one for the local self-attention in terms of predictive performance with a publicly available dataset, and puts higher attention to prespecified relevant directive words. The performance at the sentence level, however, deteriorates as sentences including the influential directive words tend to be dropped all together.


Privacy-Preserving Collaborative Learning through Feature Extraction

arXiv.org Artificial Intelligence

We propose a framework in which multiple entities collaborate to build a machine learning model while preserving privacy of their data. The approach utilizes feature embeddings from shared/per-entity feature extractors transforming data into a feature space for cooperation between entities. We propose two specific methods and compare them with a baseline method. In Shared Feature Extractor (SFE) Learning, the entities use a shared feature extractor to compute feature embeddings of samples. In Locally Trained Feature Extractor (LTFE) Learning, each entity uses a separate feature extractor and models are trained using concatenated features from all entities. As a baseline, in Cooperatively Trained Feature Extractor (CTFE) Learning, the entities train models by sharing raw data. Secure multi-party algorithms are utilized to train models without revealing data or features in plain text. We investigate the trade-offs among SFE, LTFE, and CTFE in regard to performance, privacy leakage (using an off-the-shelf membership inference attack), and computational cost. LTFE provides the most privacy, followed by SFE, and then CTFE. Computational cost is lowest for SFE and the relative speed of CTFE and LTFE depends on network architecture. CTFE and LTFE provide the best accuracy. We use MNIST, a synthetic dataset, and a credit card fraud detection dataset for evaluations.


A complete guide on logistic regression with gene expression data: training the model

#artificialintelligence

In this second part of the article, I will explain how to train a logistic model and how to evaluate it. Here you will find the corresponding Colab Notebook with all the code shown here and used for the images. The dataset used in this tutorial is obtained from Warnat-Herresthal et al. They collected and re-analyzed many datasets from leukemia. The dataset and microarray techniques are presented in detail in the previous tutorial.