Chest X-ray (CXR) imaging remains one of the most widely used diagnostic tools for detecting pulmonary diseases such as tuberculosis (TB) and pneumonia. Recent advances in deep learning, particularly Vision Transformers (ViTs), have shown strong potential for automated medical image analysis. However, most ViT architectures are pretrained on natural images and require three-channel inputs, while CXR scans are inherently grayscale. To address this gap, we propose RepViT-CXR, a channel replication strategy that adapts single-channel CXR images into a ViT-compatible format without introducing additional information loss. We evaluate RepViT-CXR on three benchmark datasets. On the TB-CXR dataset,our method achieved an accuracy of 99.9% and an AUC of 99.9%, surpassing prior state-of-the-art methods such as Topo-CXR (99.3% accuracy, 99.8% AUC). For the Pediatric Pneumonia dataset, RepViT-CXR obtained 99.0% accuracy, with 99.2% recall, 99.3% precision, and an AUC of 99.0%, outperforming strong baselines including DCNN and VGG16. On the Shenzhen TB dataset, our approach achieved 91.1% accuracy and an AUC of 91.2%, marking a performance improvement over previously reported CNN-based methods. These results demonstrate that a simple yet effective channel replication strategy allows ViTs to fully leverage their representational power on grayscale medical imaging tasks. RepViT-CXR establishes a new state of the art for TB and pneumonia detection from chest X-rays, showing strong potential for deployment in real-world clinical screening systems.

Distributed and federated learning are essential paradigms for training models across decentralized data sources while preserving privacy, yet communication overhead remains a major bottleneck. This dissertation explores strategies to improve communication efficiency, focusing on model compression, local training, and personalization. We establish a unified framework for biased and unbiased compression operators with convergence guarantees, then propose adaptive local training strategies that incorporate personalization to accelerate convergence and mitigate client drift. In particular, Scafflix balances global and personalized objectives, achieving superior performance under both IID and non-IID settings. We further introduce privacy-preserving pruning frameworks that optimize sparsity while minimizing communication costs, with Cohort-Squeeze leveraging hierarchical aggregation to reduce cross-device overhead. Finally, SymWanda, a symmetric post-training pruning method, enhances robustness under high sparsity and maintains accuracy without retraining. Extensive experiments on benchmarks and large-scale language models demonstrate favorable trade-offs among accuracy, convergence, and communication, offering theoretical and practical insights for scalable, efficient distributed learning.

Solving complex partial differential equations is vital in the physical sciences, but often requires computationally expensive numerical methods. Reduced-order models (ROMs) address this by exploiting dimensionality reduction to create fast approximations. While modern ROMs can solve parameterized families of PDEs, their predictive power degrades over long time horizons. We address this by (1) introducing a flexible, high-order, yet inexpensive finite-difference scheme and (2) proposing a Rollout loss that trains ROMs to make accurate predictions over arbitrary time horizons. We demonstrate our approach on the 2D Burgers equation.

Artifacts in electroencephalography (EEG) -- muscle, eye movement, electrode, chewing, and shiver -- confound automated analysis yet are costly to label at scale. We study whether modern generative models can synthesize realistic, label-aware artifact segments suitable for augmentation and stress-testing. Using the TUH EEG Artifact (TUAR) corpus, we curate subject-wise splits and fixed-length multi-channel windows (e.g., 250 samples) with preprocessing tailored to each model (per-window min-max for adversarial training; per-recording/channel $z$-score for diffusion). We compare a conditional WGAN-GP with a projection discriminator to a 1D denoising diffusion model with classifier-free guidance, and evaluate along three axes: (i) fidelity via Welch band-power deltas ($Δδ,\ Δθ,\ Δα,\ Δβ$), channel-covariance Frobenius distance, autocorrelation $L_2$, and distributional metrics (MMD/PRD); (ii) specificity via class-conditional recovery with lightweight $k$NN/classifiers; and (iii) utility via augmentation effects on artifact recognition. In our setting, WGAN-GP achieves closer spectral alignment and lower MMD to real data, while both models exhibit weak class-conditional recovery, limiting immediate augmentation gains and revealing opportunities for stronger conditioning and coverage. We release a reproducible pipeline -- data manifests, training configurations, and evaluation scripts -- to establish a baseline for EEG artifact synthesis and to surface actionable failure modes for future work.

This paper presents a novel, mathematically rigorous framework for autoencoder-type deep neural networks that combines optimal control theory and low-rank tensor methods to yield memory-efficient training and automated architecture discovery. The learning task is formulated as an optimization problem constrained by differential equations representing the encoder and decoder components of the network and the corresponding optimality conditions are derived via a Lagrangian approach. Efficient memory compression is enabled by approximating differential equation solutions on low-rank tensor manifolds using an adaptive explicit integration scheme. These concepts are combined to form OCTANE (Optimal Control for Tensor-based Autoencoder Network Emergence) -- a unified training framework that yields compact autoencoder architectures, reduces memory usage, and enables effective learning, even with limited training data. The framework's utility is illustrated with application to image denoising and deblurring tasks and recommendations regarding governing hyperparameters are provided.

Federated Learning (FL) is a novel, multidisciplinary Machine Learning paradigm where multiple clients, such as mobile devices, collaborate to solve machine learning problems. Initially introduced in Kone{č}n{ý} et al. (2016a,b); McMahan et al. (2017), FL has gained further attention through its inclusion in the National AI Research and Development Strategic Plan (2023 Update) of the United States (Science and on Artificial Intelligence, 2023). The FL training process is inherently decentralized and often takes place in less controlled settings compared to data centers, posing unique challenges distinct from those in fully controlled environments. In this thesis, we identify five key challenges in Federated Learning and propose novel approaches to address them. These challenges arise from the heterogeneity of data and devices, communication issues, and privacy concerns for clients in FL training. Moreover, even well-established theoretical advances in FL require diverse forms of practical implementation to enhance their real-world applicability. Our contributions advance FL algorithms and systems, bridging theoretical advancements and practical implementations. More broadly, our work serves as a guide for researchers navigating the complexities of translating theoretical methods into efficient real-world implementations and software. Additionally, it offers insights into the reverse process of adapting practical implementation aspects back into theoretical algorithm design. This reverse process is particularly intriguing, as the practical perspective compels us to examine the underlying mechanics and flexibilities of algorithms more deeply, often uncovering new dimensions of the algorithms under study.

The widespread availability of open-source repositories has led to a vast collection of reusable software components, yet their utilization remains manual, error-prone, and disconnected. Developers must navigate documentation, understand APIs, and write integration code, creating significant barriers to efficient software reuse. To address this, we present EnvX, a framework that leverages Agentic AI to agentize GitHub repositories, transforming them into intelligent, autonomous agents capable of natural language interaction and inter-agent collaboration. Unlike existing approaches that treat repositories as static code resources, EnvX reimagines them as active agents through a three-phase process: (1) TODO-guided environment initialization, which sets up the necessary dependencies, data, and validation datasets; (2) human-aligned agentic automation, allowing repository-specific agents to autonomously perform real-world tasks; and (3) Agent-to-Agent (A2A) protocol, enabling multiple agents to collaborate. By combining large language model capabilities with structured tool integration, EnvX automates not just code generation, but the entire process of understanding, initializing, and operationalizing repository functionality. We evaluate EnvX on the GitTaskBench benchmark, using 18 repositories across domains such as image processing, speech recognition, document analysis, and video manipulation. Our results show that EnvX achieves a 74.07% execution completion rate and 51.85% task pass rate, outperforming existing frameworks. Case studies further demonstrate EnvX's ability to enable multi-repository collaboration via the A2A protocol. This work marks a shift from treating repositories as passive code resources to intelligent, interactive agents, fostering greater accessibility and collaboration within the open-source ecosystem.

Generative artificial intelligence (GenAI) represent an emerging paradigm within artificial intelligence, with applications throughout the medical enterprise. Assessing GenAI applications necessitates a comprehensive understanding of the clinical task and awareness of the variability in performance when implemented in actual clinical environments. Presently, a prevalent method for evaluating the performance of generative models relies on quantitative benchmarks. Such benchmarks have limitations and may suffer from train-to-the-test overfitting, optimizing performance for a specified test set at the cost of generalizability across other task and data distributions. Evaluation strategies leveraging human expertise and utilizing cost-effective computational models as evaluators are gaining interest. We discuss current state-of-the-art methodologies for assessing the performance of GenAI applications in healthcare and medical devices.

Large language models (LLMs) are increasingly integrated into our daily lives and personalized. However, LLM personalization might also increase unintended side effects. Recent work suggests that persona prompting can lead models to falsely refuse user requests. However, no work has fully quantified the extent of this issue. To address this gap, we measure the impact of 15 sociodemographic personas (based on gender, race, religion, and disability) on false refusal. To control for other factors, we also test 16 different models, 3 tasks (Natural Language Inference, politeness, and offensiveness classification), and nine prompt paraphrases. We propose a Monte Carlo-based method to quantify this issue in a sample-efficient manner. Our results show that as models become more capable, personas impact the refusal rate less and less. Certain sociodemographic personas increase false refusal in some models, which suggests underlying biases in the alignment strategies or safety mechanisms. However, we find that the model choice and task significantly influence false refusals, especially in sensitive content tasks. Our findings suggest that persona effects have been overestimated, and might be due to other factors.

Scientific literature is growing exponentially, creating a critical bottleneck for researchers to efficiently synthesize knowledge. While general-purpose Large Language Models (LLMs) show potential in text processing, they often fail to capture scientific domain-specific nuances (e.g., technical jargon, methodological rigor) and struggle with complex scientific tasks, limiting their utility for interdisciplinary research. To address these gaps, this paper presents SciGPT, a domain-adapted foundation model for scientific literature understanding and ScienceBench, an open source benchmark tailored to evaluate scientific LLMs. Built on the Qwen3 architecture, SciGPT incorporates three key innovations: (1) low-cost domain distillation via a two-stage pipeline to balance performance and efficiency; (2) a Sparse Mixture-of-Experts (SMoE) attention mechanism that cuts memory consumption by 55\% for 32,000-token long-document reasoning; and (3) knowledge-aware adaptation integrating domain ontologies to bridge interdisciplinary knowledge gaps. Experimental results on ScienceBench show that SciGPT outperforms GPT-4o in core scientific tasks including sequence labeling, generation, and inference. It also exhibits strong robustness in unseen scientific tasks, validating its potential to facilitate AI-augmented scientific discovery.