Spatio-temporal sensor data is often sparse, noisy, and irregular, and existing interpolation or learning methods struggle here because they either ignore governing PDEs or do not scale. We introduce FieldFormer, a transformer-based framework for mesh-free spatio-temporal field reconstruction that combines data-driven flexibility with physics-based structure. For each query, FieldFormer gathers a local neighborhood using a learnable velocity-scaled distance metric, enabling anisotropic adaptation to different propagation regimes. Neighborhoods are built efficiently via per-batch offset recomputation, and refined in an expectation-maximization style as the velocity scales evolve. Predictions are made by a local transformer encoder, and physics consistency is enforced through autograd-based PDE residuals and boundary-specific penalties. Across three benchmarks--a scalar anisotropic heat equation, a vector-valued shallow-water system, and a realistic advection-diffusion pollution simulation--FieldFormer consistently outperforms strong baselines by more than 40%. Our results demonstrate that FieldFormer enables accurate (RMSE$<10^{-2}$), efficient, and physically consistent field reconstruction from sparse (0.4%-2%) and noisy(10%) data.

Large Language Models (LLMs) have recently shown strong potential in automatic program repair (APR), especially in repository-level settings where the goal is to generate patches based on natural language issue descriptions, large codebases, and regression tests. However, despite their promise, current LLM-based APR techniques often struggle to produce correct fixes due to limited understanding of code context and over-reliance on incomplete test suites. As a result, they frequently generate Draft Patches-partially correct patches that either incompletely address the bug or overfit to the test cases. In this work, we propose a novel patch refinement framework, Refine, that systematically transforms Draft Patches into correct ones. Refine addresses three key challenges: disambiguating vague issue and code context, diversifying patch candidates through test-time scaling, and aggregating partial fixes via an LLM-powered code review process. We implement Refine as a general refinement module that can be integrated into both open-agent-based and workflow-based APR systems. Our evaluation on the SWE-Bench Lite benchmark shows that Refine achieves state-of-the-art results among workflow-based approaches and approaches the best-known performance across all APR categories. Specifically, Refine boosts AutoCodeRover's performance by 14.67%, achieving a score of 51.67% and surpassing all prior baselines. On SWE-Bench Verified, Refine improves the resolution rate by 12.2%, and when integrated across multiple APR systems, it yields an average improvement of 14%-demonstrating its broad effectiveness and generalizability. These results highlight the effectiveness of refinement as a missing component in current APR pipelines and the potential of agentic collaboration in closing the gap between near-correct and correct patches. We also open source our code.

The Madden-Julian oscillation (MJO) is a planetary-scale, intraseasonal tropical rainfall phenomenon crucial for global weather and climate; however, its dynamics and predictability remain poorly understood. Here, we leverage deep learning (DL) to investigate the sources of MJO predictability, motivated by a central difference in MJO theories: which spatial scales are essential for driving the MJO? We first develop a deep convolutional neural network (DCNN) to forecast the MJO indices (RMM and ROMI). Our model predicts RMM and ROMI up to 21 and 33 days, respectively, achieving skills comparable to leading subseasonal-to-seasonal models such as NCEP. To identify the spatial scales most relevant for MJO forecasting, we conduct spectral analysis of the latent feature space and find that large-scale patterns dominate the learned signals. Additional experiments show that models using only large-scale signals as the input have the same skills as those using all the scales, supporting the large-scale view of the MJO. Meanwhile, we find that small-scale signals remain informative: surprisingly, models using only small-scale input can still produce skillful forecasts up to 1-2 weeks ahead. We show that this is achieved by reconstructing the large-scale envelope of the small-scale activities, which aligns with the multi-scale view of the MJO. Altogether, our findings support that large-scale patterns--whether directly included or reconstructed--may be the primary source of MJO predictability.

This work presents our participation in the EvalLLM 2025 challenge on biomedical Named Entity Recognition (NER) and health event extraction in French (few-shot setting). For NER, we propose three approaches combining large language models (LLMs), annotation guidelines, synthetic data, and post-processing: (1) in-context learning (ICL) with GPT-4.1, incorporating automatic selection of 10 examples and a summary of the annotation guidelines into the prompt, (2) the universal NER system GLiNER, fine-tuned on a synthetic corpus and then verified by an LLM in post-processing, and (3) the open LLM LLaMA-3.1-8B-Instruct, fine-tuned on the same synthetic corpus. Event extraction uses the same ICL strategy with GPT-4.1, reusing the guideline summary in the prompt. Results show GPT-4.1 leads with a macro-F1 of 61.53% for NER and 15.02% for event extraction, highlighting the importance of well-crafted prompting to maximize performance in very low-resource scenarios.

Small Vision-Language Models (VLMs) provide a computationally efficient alternative to larger models, at the cost of weaker generalization abilities and downstream task performance. These shortcomings could be addressed by test-time scaling techniques, but existing methods are typically computationally demanding, contradicting the resource-efficient design goals of small models. To address these limitations, we propose two novel and efficient test-time scaling strategies that leverage the model-internal features rather than external supervision: (i) Test-Time Augmentation (TTAug), which generates multiple augmented inputs and aggregates outputs at the token level without parameter updates, and (ii) Test-Time Adaptation (TTAdapt), which adapts model parameters during inference using consensus-based pseudolabels from TTAug. Through extensive experiments across nine benchmarks, we demonstrate consistent performance improvements while maintaining computational efficiency suitable for resource-constrained environments. The generality of our approach is demonstrated both within models at different scales and across different VLMs without additional tuning.

Fault detection in power distribution grids is critical for ensuring system reliability and preventing costly outages. Moreover, fault detection methodologies should remain robust to evolving grid topologies caused by factors such as reconfigurations, equipment failures, and Distributed Energy Resource (DER) integration. Current data-driven state-of-the-art methods use Recurrent Neural Networks (RNNs) for temporal modeling and Graph Neural Networks (GNNs) for spatial learning, in an RNN+GNN pipeline setting (RGNN in short). Specifically, for power system fault diagnosis, Graph Convolutional Networks (GCNs) have been adopted. Yet, various more advanced GNN architectures have been proposed and adopted in domains outside of power systems. In this paper, we set out to systematically and consistently benchmark various GNN architectures in an RNN+GNN pipeline model. Specifically, to the best of our knowledge, we are the first to (i) propose to use GraphSAGE and Graph Attention (GAT, GATv2) in an RGNN for fault diagnosis, and (ii) provide a comprehensive benchmark against earlier proposed RGNN solutions (RGCN) as well as pure RNN models (especially Gated Recurrent Unit (GRU)), particularly (iii) exploring their generalization potential for deployment in different settings than those used for training them. Our experimental results on the IEEE 123-node distribution network show that RGATv2 has superior generalization capabilities, maintaining high performance with an F1-score reduction of $\sim$12% across different topology settings. In contrast, pure RNN models largely fail, experiencing an F1-score reduction of up to $\sim$60%, while other RGNN variants also exhibit significant performance degradation, i.e., up to $\sim$25% lower F1-scores.

The Transformer architecture has become the de facto standard for Large Language Models (LLMs), demonstrating remarkable capabilities in language understanding and generation. However, its application in conversational AI is fundamentally constrained by its stateless nature and the quadratic computational complexity ($O(L^2)$) with respect to sequence length $L$. Current models emulate memory by reprocessing an ever-expanding conversation history with each turn, leading to prohibitive costs and latency in long dialogues. This paper introduces the Reactive Transformer (RxT), a novel architecture designed to overcome these limitations by shifting from a data-driven to an event-driven paradigm. RxT processes each conversational turn as a discrete event in real-time, maintaining context in an integrated, fixed-size Short-Term Memory (STM) system. The architecture features a distinct operational cycle where a generator-decoder produces a response based on the current query and the previous memory state, after which a memory-encoder and a dedicated Memory Attention network asynchronously update the STM with a representation of the complete interaction. This design fundamentally alters the scaling dynamics, reducing the total user-facing cost of a conversation from quadratic ($O(N^2 \cdot T)$) to linear ($O(N \cdot T)$) with respect to the number of interactions $N$. By decoupling response generation from memory updates, RxT achieves low latency, enabling truly real-time, stateful, and economically viable long-form conversations. We validated our architecture with a series of proof-of-concept experiments on synthetic data, demonstrating superior performance and constant-time inference latency compared to a baseline stateless model of comparable size.

Foundation models (FMs) have transformed computational pathology by providing powerful, general - purpose feature extractors. However, adapting and benchmarking individual FMs for specific diagnostic tasks is often time - consuming and resource - intensive, espe cially given their scale and diversity. To address this challenge, we introduce Group - Aggregative Selection Multi - Instance Learning (GAS - MIL), a flexible ensemble framework that seamlessly integrates features from multiple FMs, preserving their complementa ry strengths without requiring manual feature selection or extensive task - specific fine - tuning. Across classification tasks in three cancer datasets -- prostate (PANDA), ovarian (UBC - OCEAN), and breast (TCGA - BrCa) -- GAS - MIL consistently achieves superior or on - par performance relative to individual FMs and established MIL methods, demonstrating its robustness and generalizability. By enabling efficient int egration of heterogeneous FMs, GAS - MIL streamlines model deployment for pathology and provides a scalable foundation for future multimodal and precision oncology applications.

Language models can be sampled multiple times to access the distribution underlying their responses, but existing methods cannot efficiently synthesize rich epistemic signals across different long-form responses. We introduce Consensus Graphs (ConGrs), a flexible DAG-based data structure that represents shared information, as well as semantic variation in a set of sampled LM responses to the same prompt. We construct ConGrs using a light-weight lexical sequence alignment algorithm from bioinformatics, supplemented by the targeted usage of a secondary LM judge. Further, we design task-dependent decoding methods to synthesize a single, final response from our ConGr data structure. Our experiments show that synthesizing responses from ConGrs improves factual precision on two biography generation tasks by up to 31% over an average response and reduces reliance on LM judges by more than 80% compared to other methods. We also use ConGrs for three refusal-based tasks requiring abstention on unanswerable queries and find that abstention rate is increased by up to 56%. We apply our approach to the MATH and AIME reasoning tasks and find an improvement over self-verification and majority vote baselines by up to 6 points of accuracy. We show that ConGrs provide a flexible method for capturing variation in LM responses and using the epistemic signals provided by response variation to synthesize more effective responses.

In specialized domains, humans often compare new problems against similar examples, highlight nuances, and draw conclusions instead of analyzing information in isolation. When applying reasoning in specialized contexts with LLMs on top of a RAG, the pipeline can capture contextually relevant information, but it is not designed to retrieve comparable cases or related problems. While RAG is effective at extracting factual information, its outputs in specialized reasoning tasks often remain generic, reflecting broad facts rather than context-specific insights. In finance, it results in generic risks that are true for the majority of companies. To address this limitation, we propose a peer-aware comparative inference layer on top of RAG. Our contrastive approach outperforms baseline RAG in text generation metrics such as ROUGE and BERTScore in comparison with human-generated equity research and risk.