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 Deep Learning


Semantic-Condition Tuning: Fusing Graph Context with Large Language Models for Knowledge Graph Completion

arXiv.org Artificial Intelligence

Fusing Knowledge Graphs with Large Language Models is crucial for knowledge-intensive tasks like knowledge graph completion. The prevailing paradigm, prefix-tuning, simply concatenates knowledge embeddings with text inputs. However, this shallow fusion overlooks the rich relational semantics within KGs and imposes a significant implicit reasoning burden on the LLM to correlate the prefix with the text. To address these, we propose Semantic-condition Tuning (SCT), a new knowledge injection paradigm comprising two key modules. First, a Semantic Graph Module employs a Graph Neural Network to extract a context-aware semantic condition from the local graph neighborhood, guided by knowledge-enhanced relations. Subsequently, this condition is passed to a Condition-Adaptive Fusion Module, which, in turn, adaptively modulates the textual embedding via two parameterized projectors, enabling a deep, feature-wise, and knowledge-aware interaction. The resulting pre-fused embedding is then fed into the LLM for fine-tuning. Extensive experiments on knowledge graph benchmarks demonstrate that SCT significantly outperforms prefix-tuning and other strong baselines. Our analysis confirms that by modulating the input representation with semantic graph context before LLM inference, SCT provides a more direct and potent signal, enabling more accurate and robust knowledge reasoning.


Unleashing Perception-Time Scaling to Multimodal Reasoning Models

arXiv.org Artificial Intelligence

Recent advances in inference-time scaling, particularly those leveraging reinforcement learning with verifiable rewards, have substantially enhanced the reasoning capabilities of Large Vision-Language Models (LVLMs). Inspired by this success, similar strategies have been applied to multimodal reasoning, yet their impact on visual perception remains unclear. To investigate this gap, we introduce DisTANCE, a perception-centric benchmark for visual estimation tasks. Evaluation results show that LVLMs exhibit limited estimation precision, and inference-time scaling offers only marginal gains. We attribute this to the fast perception paradigm of current LVLMs, where visual understanding is treated as a one-shot output without modeling the underlying perceptual process. To address this, we propose Perception-Time Scaling (PTS), a novel paradigm that encourages token-rich perception and decomposes complex perception problems into intermediate tractable sub-problems, thereby enabling perception to align with and benefit from inference-time scaling. Combined with reinforcement learning techniques, PTS significantly improves perception accuracy, raising high-precision performance on DisTANCE from 8.0% to 64.7%, and generalizes well to out-of-domain tasks. Surprisingly, even though PTS data are purely synthetic, combining them with math reasoning data yields consistent gains in both reasoning and real-world perception benchmarks. Further analysis reveals that PTS introduces more perception-related tokens and increases the model's attention to image tokens. Our code and data will be publicly released.


Analytical Survey of Learning with Low-Resource Data: From Analysis to Investigation

arXiv.org Artificial Intelligence

Learning with high-resource data has demonstrated substantial success in artificial intelligence (AI); however, the costs associated with data annotation and model training remain significant. A fundamental objective of AI research is to achieve robust generalization with limited-resource data. This survey employs agnostic active sampling theory within the Probably Approximately Correct (PAC) framework to analyze the generalization error and label complexity associated with learning from low-resource data in both model-agnostic supervised and unsupervised settings. Based on this analysis, we investigate a suite of optimization strategies tailored for low-resource data learning, including gradient-informed optimization, meta-iteration optimization, geometry-aware optimization, and LLMs-powered optimization. Furthermore, we provide a comprehensive overview of multiple learning paradigms that can benefit from low-resource data, including domain transfer, reinforcement feedback, and hierarchical structure modeling. Finally, we conclude our analysis and investigation by summarizing the key findings and highlighting their implications for learning with low-resource data.


DualResearch: Entropy-Gated Dual-Graph Retrieval for Answer Reconstruction

arXiv.org Artificial Intelligence

The deep-research framework orchestrates external tools to perform complex, multi-step scientific reasoning that exceeds the native limits of a single large language model. However, it still suffers from context pollution, weak evidentiary support, and brittle execution paths. To address these issues, we propose DualResearch, a retrieval and fusion framework that matches the epistemic structure of tool-intensive reasoning by jointly modeling two complementary graphs: a breadth semantic graph that encodes stable background knowledge, and a depth causal graph that captures execution provenance. Each graph has a layer-native relevance function, seed-anchored semantic diffusion for breadth, and causal-semantic path matching with reliability weighting for depth. To reconcile their heterogeneity and query-dependent uncertainty, DualResearch converts per-layer path evidence into answer distributions and fuses them in log space via an entropy-gated rule with global calibration. The fusion up-weights the more certain channel and amplifies agreement. As a complement to deep-research systems, DualResearch compresses lengthy multi-tool execution logs into a concise reasoning graph, and we show that it can reconstruct answers stably and effectively. On the scientific reasoning benchmarks HLE and GPQA, DualResearch achieves competitive performance. Using log files from the open-source system InternAgent, its accuracy improves by 7.7% on HLE and 6.06% on GPQA.


Physically Valid Biomolecular Interaction Modeling with Gauss-Seidel Projection

arXiv.org Artificial Intelligence

Biomolecular interaction modeling has been substantially advanced by foundation models, yet they often produce all-atom structures that violate basic steric feasibility. We address this limitation by enforcing physical validity as a strict constraint during both training and inference with a unified module. At its core is a differentiable projection that maps the provisional atom coordinates from the diffusion model to the nearest physically valid configuration. This projection is achieved using a Gauss-Seidel scheme, which exploits the locality and sparsity of the constraints to ensure stable and fast convergence at scale. By implicit differentiation to obtain gradients, our module integrates seamlessly into existing frameworks for end-to-end finetuning. With our Gauss-Seidel projection module in place, two de-noising steps are sufficient to produce biomolecular complexes that are both physically valid and structurally accurate. Across six benchmarks, our 2-step model achieves the same structural accuracy as state-of-the-art 200-step diffusion baselines, delivering 10 wall-clock speedups while guaranteeing physical validity. End-to-end, all-atom protein structure predictors that integrate deep learning with generative modeling are emerging as transformative tools for biomolecular interaction modeling (Senior et al., 2020b; Jumper et al., 2021; Abramson et al., 2024; Corso et al., 2023; Watson et al., 2023). These systems achieve unprecedented accuracy in predicting arbitrary biomolecular complexes and are shaping the future of computational biology and drug discovery. Contrary to their high structural accuracy, current predictors often fail to satisfy a conceptually simpler but basic requirement: the physical validity of the all-atom output. This failure, also commonly termed hallucination, appears as steric clashes, distorted covalent geometry, and stereochemical errors (Figure 1).


Variability Aware Recursive Neural Network (VARNN): A Residual-Memory Model for Capturing Temporal Deviation in Sequence Regression Modeling

arXiv.org Artificial Intelligence

Real-world time series data exhibit non-stationary behavior, regime shifts, and temporally varying noise (heteroscedastic) that degrade the robustness of standard regression models. We introduce the Variability-Aware Recursive Neural Network (VARNN), a novel residual-aware architecture for supervised time-series regression that learns an explicit error memory from recent prediction residuals and uses it to recalibrate subsequent predictions. VARNN augments a feed-forward predictor with a learned error-memory state that is updated from residuals over a short context steps as a signal of variability and drift, and then conditions the final prediction at the current time step. Across diverse dataset domains, appliance energy, healthcare, and environmental monitoring, experimental results demonstrate VARNN achieves superior performance and attains lower test MSE with minimal computational overhead over static, dynamic, and recurrent baselines. Our findings show that the VARNN model offers robust predictions under a drift and volatility environment, highlighting its potential as a promising framework for time-series learning.


RO-Bench: Large-scale robustness evaluation of MLLMs with text-driven counterfactual videos

arXiv.org Artificial Intelligence

Recently, Multi-modal Large Language Models (MLLMs) have demonstrated significant performance across various video understanding tasks. However, their robustness, particularly when faced with manipulated video content, remains largely unexplored. In this paper, we introduce Ro-Bench, the first benchmark for evaluating MLLMs on dynamic out-of-distribution (OOD) counterfactual video test sets. Ro-Bench incorporates high-quality, diverse and temporally relevant video data, by editing Style, Object, Background and their compositions. We evaluated eight recent video MLLMs and found that current models exhibit substantial performance degradation on Ro-Bench when exposed to counterfactual video content. Furthermore, we demonstrate that fine-tuning MLLMs with counterfactual data enhances robustness, achieving a 21.73% performance increase on Ro-Bench and a 12.78% improvement across 20 tasks in the MVBench dataset. These findings underscore the effectiveness of counterfactual data in enhancing the video understanding ability of MLLMs. The code and data will be released shortly.


MATT-CTR: Unleashing a Model-Agnostic Test-Time Paradigm for CTR Prediction with Confidence-Guided Inference Paths

arXiv.org Artificial Intelligence

Recently, a growing body of research has focused on either optimizing CTR model architectures to better model feature interactions or refining training objectives to aid parameter learning, thereby achieving better predictive performance. However, previous efforts have primarily focused on the training phase, largely neglecting opportunities for optimization during the inference phase. Infrequently occurring feature combinations, in particular, can degrade prediction performance, leading to unreliable or low-confidence outputs. To unlock the predictive potential of trained CTR models, we propose a Model-Agnostic Test-Time paradigm (MATT), which leverages the confidence scores of feature combinations to guide the generation of multiple inference paths, thereby mitigating the influence of low-confidence features on the final prediction. Specifically, to quantify the confidence of feature combinations, we introduce a hierarchical probabilistic hashing method to estimate the occurrence frequencies of feature combinations at various orders, which serve as their corresponding confidence scores. Then, using the confidence scores as sampling probabilities, we generate multiple instance-specific inference paths through iterative sampling and subsequently aggregate the prediction scores from multiple paths to conduct robust predictions. Finally, extensive offline experiments and online A/B tests strongly validate the compatibility and effectiveness of MATT across existing CTR models.


AB-PINNs: Adaptive-Basis Physics-Informed Neural Networks for Residual-Driven Domain Decomposition

arXiv.org Artificial Intelligence

We introduce adaptive-basis physics-informed neural networks (AB-PINNs), a novel approach to domain decomposition for training PINNs in which existing subdomains dynamically adapt to the intrinsic features of the unknown solution. Drawing inspiration from classical mesh refinement techniques, we also modify the domain decomposition on-the-fly throughout training by introducing new subdomains in regions of high residual loss, thereby providing additional expressive power where the solution of the differential equation is challenging to represent. Our flexible approach to domain decomposition is well-suited for multiscale problems, as different subdomains can learn to capture different scales of the underlying solution. Moreover, the ability to introduce new subdomains during training helps prevent convergence to unwanted local minima and can reduce the need for extensive hyperparameter tuning compared to static domain decomposition approaches. Throughout, we present comprehensive numerical results which demonstrate the effectiveness of AB-PINNs at solving a variety of complex multiscale partial differential equations.


Simple and Robust Forecasting of Spatiotemporally Correlated Small Earth Data with A Tabular Foundation Model

arXiv.org Artificial Intelligence

Small Earth data are geoscience observations with limited short-term monitoring variability, providing sparse but meaningful measurements, typically exhibiting spatiotemporal correlations. Spatiotemporal forecasting on such data is crucial for understanding geoscientific processes despite their small scale. However, conventional deep learning models for spatiotemporal forecasting requires task-specific training for different scenarios. Foundation models do not need task-specific training, but they often exhibit forecasting bias toward the global mean of the pretraining distribution. Here we propose a simple and robust approach for spatiotemporally correlated small Earth data forecasting. The essential idea is to characterize and quantify spatiotemporal patterns of small Earth data and then utilize tabular foundation models for accurate forecasting across different scenarios. Comparative results across three typical scenarios demonstrate that our forecasting approach achieves superior accuracy compared to the graph deep learning model (T -GCN) and tabular foundation model (TabPFN) in the majority of instances, exhibiting stronger robustness. Keywords: Small Earth data, Spatiotemporal correlations, Tabular foundation model, Forecasting, Deep learning 1. Introduction Small Earth data refers to geoscience time-series observations in which short-term monitoring provides limited informative variation, resulting in only sparse but meaningful measurements being available. These data predominantly possess spatiotemporal correlations. Despite their small scale, forecasting on such data is of critical importance for understanding geoscientific processes (Saad et al., 2024; Y u et al., 2024).