The rapid adoption of Large Language Models (LLMs) has raised important concerns about the factual reliability of their outputs, particularly in low-resource languages such as Urdu. Existing automated fact-checking systems are predominantly developed for English, leaving a significant gap for the more than 200 million Urdu speakers worldwide. In this work, we present UrduFactBench and UrduFactQA, two novel hand-annotated benchmarks designed to enable fact-checking and factual consistency evaluation in Urdu. While UrduFactBench focuses on claim verification, UrduFactQA targets the factuality of LLMs in question answering. These resources, the first of their kind for Urdu, were developed through a multi-stage annotation process involving native Urdu speakers. To complement these benchmarks, we introduce UrduFactCheck, a modular fact-checking framework that incorporates both monolingual and translation-based evidence retrieval strategies to mitigate the scarcity of high-quality Urdu evidence. Leveraging these resources, we conduct an extensive evaluation of twelve LLMs and demonstrate that translation-augmented pipelines consistently enhance performance compared to monolingual ones. Our findings reveal persistent challenges for open-source LLMs in Urdu and underscore the importance of developing targeted resources. All code and data are publicly available at https://github.com/mbzuai-nlp/UrduFactCheck.

Deep learning methods have shown promising performance in fault diagnosis for multimode process. Most existing studies assume that the collected health state categories from different operating modes are identical. However, in real industrial scenarios, these categories typically exhibit only partial overlap. The incompleteness of the available data and the large distributional differences between the operating modes pose a significant challenge to existing fault diagnosis methods. To address this problem, a novel fault diagnosis model named self-adaptive temporal-spatial attention network (TSA-SAN) is proposed. First, inter-mode mappings are constructed using healthy category data to generate multimode samples. To enrich the diversity of the fault data, interpolation is performed between healthy and fault samples. Subsequently, the fault diagnosis model is trained using real and generated data. The self-adaptive instance normalization is established to suppress irrelevant information while retaining essential statistical features for diagnosis. In addition, a temporal-spatial attention mechanism is constructed to focus on the key features, thus enhancing the generalization ability of the model. The extensive experiments demonstrate that the proposed model significantly outperforms the state-of-the-art methods. The code will be available on Github at https://github.com/GuangqiangLi/TSA-SAN.

Recommender systems filter contents/items valuable to users by inferring preferences from user features and historical behaviors. Mainstream approaches follow the learning-to-rank paradigm, which focus on discovering and modeling item topics (e.g., categories), and capturing user preferences on these topics based on historical interactions. However, this paradigm often neglects the modeling of user characteristics and their social roles, which are logical confounders influencing the correlated interest and user preference transition. To bridge this gap, we introduce the user role identification task and the behavioral logic modeling task that aim to explicitly model user roles and learn the logical relations between item topics and user social roles. We show that it is possible to explicitly solve these tasks through an efficient integration framework of Large Language Model (LLM) and recommendation systems, for which we propose TagCF. On the one hand, TagCF exploits the (Multi-modal) LLM's world knowledge and logic inference ability to extract realistic tag-based virtual logic graphs that reveal dynamic and expressive knowledge of users, refining our understanding of user behaviors. On the other hand, TagCF presents empirically effective integration modules that take advantage of the extracted tag-logic information, augmenting the recommendation performance. We conduct both online experiments and offline experiments with industrial and public datasets as verification of TagCF's effectiveness, and we empirically show that the user role modeling strategy is potentially a better choice than the modeling of item topics. Additionally, we provide evidence that the extracted logic graphs are empirically a general and transferable knowledge that can benefit a wide range of recommendation tasks. Our code is available in https://github.com/Code2Q/TagCF.

Accuracy remains a standard metric for evaluating AI systems, but it offers limited insight into how models arrive at their solutions. In this work, we introduce a benchmark based on brainteasers written in long narrative form to probe more deeply into the types of reasoning strategies that models use. Brainteasers are well-suited for this goal because they can be solved with multiple approaches, such as a few-step solution that uses a creative insight or a longer solution that uses more brute force. We investigate large language models (LLMs) across multiple layers of reasoning, focusing not only on correctness but also on the quality and creativity of their solutions. We investigate many aspects of the reasoning process: (1) semantic parsing of the brainteasers into precise mathematical competition style formats; (2) generating solutions from these mathematical forms; (3) self-correcting solutions based on gold solutions; (4) producing step-by-step sketches of solutions; and (5) making use of hints. We find that LLMs are in many cases able to find creative, insightful solutions to brainteasers, suggesting that they capture some of the capacities needed to solve novel problems in creative ways. Nonetheless, there also remain situations where they rely on brute force despite the availability of more efficient, creative solutions, highlighting a potential direction for improvement in the reasoning abilities of LLMs.

Graph neural networks (GNNs) leverage the connectivity and structure of real-world graphs to learn intricate properties and relationships between nodes. Many real-world graphs exceed the memory capacity of a GPU due to their sheer size, and training GNNs on such graphs requires techniques such as mini-batch sampling to scale. The alternative approach of distributed full-graph training suffers from high communication overheads and load imbalance due to the irregular structure of graphs. We propose a three-dimensional (3D) parallel approach for full-graph training that tackles these issues and scales to billion-edge graphs. In addition, we introduce optimizations such as a double permutation scheme for load balancing, and a performance model to predict the optimal 3D configuration of our parallel implementation -- Plexus. We evaluate Plexus on six different graph datasets and show scaling results on up to 2048 GPUs of Perlmutter, and 1024 GPUs of Frontier. Plexus achieves unprecedented speedups of 2.3-12.5x over prior state of the art, and a reduction in time-to-solution by 5.2-8.7x on Perlmutter and 7.0-54.2x on Frontier.

Deep learning-based antimicrobial peptide (AMP) discovery faces critical challenges such as limited controllability, lack of representations that efficiently model antimicrobial properties, and low experimental hit rates. To address these challenges, we introduce OmegAMP, a framework designed for reliable AMP generation with increased controllability. Its diffusion-based generative model leverages a novel conditioning mechanism to achieve fine-grained control over desired physicochemical properties and to direct generation towards specific activity profiles, including species-specific effectiveness. This is further enhanced by a biologically informed encoding space that significantly improves overall generative performance. Complementing these generative capabilities, OmegAMP leverages a novel synthetic data augmentation strategy to train classifiers for AMP filtering, drastically reducing false positive rates and thereby increasing the likelihood of experimental success. Our in silico experiments demonstrate that OmegAMP delivers state-of-the-art performance across key stages of the AMP discovery pipeline, enabling us to achieve an unprecedented success rate in wet lab experiments. We tested 25 candidate peptides, 24 of them (96%) demonstrated antimicrobial activity, proving effective even against multi-drug resistant strains. Our findings underscore OmegAMP's potential to significantly advance computational frameworks in the fight against antimicrobial resistance.

Fine-tuning pre-trained large language models (LLMs) presents a dual challenge of balancing parameter efficiency and model capacity. Existing methods like low-rank adaptations (LoRA) are efficient but lack flexibility, while Mixture-of-Experts (MoE) enhance model capacity at the cost of more & under-utilized parameters. To address these limitations, we propose Structural Mixture of Residual Experts (S'MoRE), a novel framework that seamlessly integrates the efficiency of LoRA with the flexibility of MoE. Conceptually, S'MoRE employs hierarchical low-rank decomposition of expert weights, yielding residuals of varying orders interconnected in a multi-layer structure. By routing input tokens through sub-trees of residuals, S'MoRE emulates the capacity of numerous experts by instantiating and assembling just a few low-rank matrices. We craft the inter-layer propagation of S'MoRE's residuals as a special type of Graph Neural Network (GNN), and prove that under similar parameter budget, S'MoRE improves structural flexibility of traditional MoE (or Mixture-of-LoRA) by exponential order. Comprehensive theoretical analysis and empirical results demonstrate that S'MoRE achieves superior fine-tuning performance, offering a transformative approach for efficient LLM adaptation. Our implementation is available at: https://github.com/ZimpleX/SMoRE-LLM.

The start of deep neural network training is characterized by a brief yet critical phase that lasts from the beginning of the training until the accuracy reaches approximately 50\%. During this phase, disordered representations rapidly transition toward ordered structure, and we term this phase the Enlightenment Period. Through theoretical modeling based on phase transition theory and experimental validation, we reveal that applying Mixup data augmentation during this phase has a dual effect: it introduces a Gradient Interference Effect that hinders performance, while also providing a beneficial Activation Revival Effect to restore gradient updates for saturated neurons. We further demonstrate that this negative interference diminishes as the sample set size or the model parameter size increases, thereby shifting the balance between these two effects. Based on these findings, we propose three strategies that improve performance by solely adjusting the training data distribution within this brief period: the Mixup Pause Strategy for small-scale scenarios, the Alpha Boost Strategy for large-scale scenarios with underfitting, and the High-Loss Removal Strategy for tasks where Mixup is inapplicable (e.g., time series and large language models). Extensive experiments show that these strategies achieve superior performance across diverse architectures such as ViT and ResNet on datasets including CIFAR and ImageNet-1K. Ultimately, this work offers a novel perspective on enhancing model performance by strategically capitalizing on the dynamics of the brief and crucial early stages of training. Code is available at https://anonymous.4open.science/r/code-A5F1/.

De novo molecule generation can suffer from data inefficiency; requiring large amounts of training data or many sampled data points to conduct objective optimization. The latter is a particular disadvantage when combining deep generative models with computationally expensive molecule scoring functions (a.k.a. oracles) commonly used in computer-aided drug design. Recent works have therefore focused on methods to improve sample efficiency in the context of de novo molecule drug design, or to benchmark it. In this work, we discuss and adapt a recent sample efficiency benchmark to better reflect realistic goals also with respect to the quality of chemistry generated, which must always be considered in the context of small-molecule drug design; we then re-evaluate all benchmarked generative models. We find that accounting for molecular weight and LogP with respect to the training data, and the diversity of chemistry proposed, re-orders the ranking of generative models. In addition, we benchmark a recently proposed method to improve sample efficiency (Augmented Hill-Climb) and found it ranked top when considering both the sample efficiency and chemistry of molecules generated. Continual improvements in sample efficiency and chemical desirability enable more routine integration of computationally expensive scoring functions on a more realistic timescale.

We release Gaperon, a fully open suite of French-English-coding language models designed to advance transparency and reproducibility in large-scale model training. The Gaperon family includes 1.5B, 8B, and 24B parameter models trained on 2-4 trillion tokens, released with all elements of the training pipeline: French and English datasets filtered with a neural quality classifier, an efficient data curation and training framework, and hundreds of intermediate checkpoints. Through this work, we study how data filtering and contamination interact to shape both benchmark and generative performance. We find that filtering for linguistic quality enhances text fluency and coherence but yields subpar benchmark results, and that late deliberate contamination -- continuing training on data mixes that include test sets -- recovers competitive scores while only reasonably harming generation quality. We discuss how usual neural filtering can unintentionally amplify benchmark leakage. To support further research, we also introduce harmless data poisoning during pretraining, providing a realistic testbed for safety studies. By openly releasing all models, datasets, code, and checkpoints, Gaperon establishes a reproducible foundation for exploring the trade-offs between data curation, evaluation, safety, and openness in multilingual language model development.